LOC110485234 (LOC106605534)


Basic Information

Item Value
gene id LOC110485234
gene name LOC106605534
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27184510 ~ 27202253 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556296.2
AGAGGGGGCAAGTCTAATgcatagagagagcgagaaagctaAAGAACATCTGCATATTCTCTGACTGACTGCACGACCACAAGTCACCAGCTTGACTCACTCGCCCAGGTGGATTCCCTTTTCCTGCTTTACTTATTTTTCACAACATTTAATTTAGATTTACTGACAGATCTTTTCACAAAACTTTATTTTGATATTAAGGATGAGGACTCTGGCCTTCGCGCTCTTTTGCCTGCTCTGCTGCGATGCAGTCAGAGTGGACCACAGAGACAGACCCCGTCCCAGACCATCCGTCCTGTCCAGAGGACGCAACGACTCGGCCGTCCAGTCCAACTCAGTGGAGAGCCTGTGTAAAGGGAAGCCCCTGGATTTTGTGTTCATCATCGATAGCTCCCGCAGCGTGCGTCCCAGCGACTACGAAAAGGTCAAGATCTTCATCACCAACATCCTGGCCTTCCTGGACGTGGGGCCGGAGGCGACGCGCGTCGGGCTGCTGCAGTACGGCAGCGTGGTGCAGAACGAGTTCTCCCTCAACACCTACAGCAGCAAGGCAGATGTGGAGCGGGCGGTGAAGGCCATGGACCACCTGGCCACCGGCACCATGACCGGCCTGGCTATCCAGTACACCATGGAGACAGCCTTCACCGAGCCAGAGGGCGCCCGACCCGCCGACCTGCACATCCCCCGCATCGCCATGATCATAACGGACGGGCGCCCCCAGGACACGGTGGAAGAGGTGGCGGCACAGGCCCGGCAGGCAGGCATCCAGATATTCGCCATCGGAGTGGGCAGGGTGGATATGAACACGCTGCGGGTCATCGGGAGTGAGCCCCACTCGGAGCATGTGTACCTCGTGGCCAACTTCAGCCAGATAGAGACCCTCACCTCCGTCTTCCAGTCCAATCTGTGTGGAGgTATAACAGATCTGTGCTCTGTGATGGACCATCCGTGTGATCACCTCTGTGTGAGCACCCCAGCCTCCTACATGTGCCGGTGTAGAAAGGGTTACACCCTTAACTCTGATGGCAAGACCTGCCACGCGGAAGACCCGTGTGATGTGGTGGACCATGGCTGTGCCCACATCTGTGCCAAGGTGCCAGGGGTACTTGGCTACGAGTGTCACTGCCGGCTTGGGTATGAACTCAACGAGGACGAGAGGACGTGCCGAAGAATAGATTACTGTGACCTGGGGAACCATGGCTGTCAGCATGACTGTGTCAGCTCTCCTGAGTCCTACGTCTGTAGATGCACGAGGGGCTATGTTCTCAACCGCGATGGCAAGACCTGCAGCAAGAttgaccactgtgctcttggcgACCACGGCTGTGAACATGAGTGTGTGAACACTGAAGATGTATTTTTCTGTAAATGCAATGAAGGCTACATACTCAGACCTGATAATAAAGCCTGCAAAAAGCTTGATCCCTGTTCCCTTGGTAACCATGGGTGTGAGCATGACTGTGTGAACACTGAAGATTCATTTGTGTGTAGATGTCGAGAAGGCTACAAACTCAGACCTGATCACAGAACCTGCCAGAAGGCAGTGTGTGGAGATGGAGTGATGGATCTGGTATTTGTAATTGACGGCTCTAAGAGCCTGGGACCGGCCAACTTTGAGCTGGTCAAGCAGTTTGTGAACGGCATCGTGGACTCTCTGGACGTGTCCGGCACGGGCACCCACGTGGGGCTGCTGCAGTACTCCAGTAAGGTCCGCACAGAGTTCATCCTGGGTCAGTATACCTCAGGCCGGGACATCAACAGGGCCGTATTACAGATGCAGTACATGGGCAGAGGATCCATGACGGGTGCTGCCCTGCGTCACATGTTTGAGTACAGCTTCTCTGCCAAGGAGGGGGCCAGGCCCGACATACCACGGGTCAGCATCGTGTTCACCGACGGACGATCCCAGGATGATGTGTCGAAATGGGCCTCTAAGGCAAAGGATGCTGGTATCACGATATATGCACTTGGTGTTGGTAAAGCCATCGAAGAGGAGCTCAGGGAAATTGCTTCCGAGCCAGATGATAAGCATTTGTACTATGCTGAAGATTTTAGCAACATGGGAGAAATTACAGACAAATTGAAGTCACGGATGTGTAAAGAGAAACCCTCCCCTCAAGATATGTGTAAGTGTGAGAACGTGATGCTCTTCCAGAGGCAGGTCAACGAACAGCTTAGGAGACTGACCCAGAATATTGAGGTTGTGTCAGAAAGGATGGAGACCCTTGAGAATCAGCTTGGACACAAATGAAGGACAAAGACATTGTTTTCATCTGTTCGTCCTCAACTGGCCTGCGGTGCAAGAGCATTACTAAACTTCAAGGGATATCTTTAAGCTATTTCAACAAGCTACACTGAAATATAATATGGAATATTTTCTACAGTAACTGCTATTTATATTCTGAACAAAACTATGCATTTATGCATGTGGCTGTGGACTGGAGTAAGTGAAGCCAAAAATACTGTATATCTTTGCTACATTCAGgtatcaaaatgtgtttatttttaaaAGTAAAATGTTATTTGGCAGATAACTGCAATTTATAGATACAAATATAACTCGTATAAGATACAGTACATTTTATAATGACAAATCAAAGTAAAATTACTTGTATTTCAAGCTAAATACTTTCTATTGCTGTTGTGAATAAAATCCCTGTTGAT
>TU147570
gccttattgctattatcacacgactgtcagccaatcagtattcagggctcgtaccacccagtttataatgtgtgTTAGATCGATTTTCTCTCATGCACTGCATTTCAGGAAATATTTATTGAAGAGCGGGTAAGGACTTTATGTTCAGGGGGAAAATGCTGTACATCTCTGCCACCTGCAGGTGTTTTTATGAAGTACAACAGAAACCATACCATTGGAGGCCTatcattgtacagtatattgtgAGGCTCTGGGAATGAATAATTGTATTGCACTTGATCTGTGTCAGTCTATTCCTAAAAGACAATCcatactgtgtctgtctgtgaacaGAGAAACCCTCCCCTCAAGATATGTGTAAGTGTGAGAACGTGATGCTCTTCCAGAGGCAGGTCAACGAACAGCTTAGGAGACTGACCCAGAATATTGAGGTTGTGTCAGAAAGGATGGAGACCCTTGAGAATCAGCTTGGACACAAATGAAGGACAAAGACATTGTTTTCATCTGTTCGTCCTCAACTGGCCTGCGGTGCAAGAGCATTACTAAACTTCAAGGGATATCTTTAAGCTATTTCAACAAGCTACACTGAAATATAATATGGAATATTTTCTACAGTAACTGCTATTTATATTCTGAACAAAACTATGCATTTATGCATGTGGCTGTGGACTGGAGTAAGTGAAGCCAAAAATACTGTATATCTTTGCTACATTCAGgtatcaaaatgtgtttatttttaaaAGTAAAATGTTATTTGGCAGATAACTGCAATTTATAGATACAAATATAACTCGTATAAGATACAGTACATTTTATAATGACAAATCAAAGTAAAATTACTTGTATTTCAAGCTAAATACTTTCTATTGCTGT

Function

NR:

description
LOW QUALITY PROTEIN: matrilin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556296.2 False 2664 mRNA 0.50 13 27184510 27202253
TU147570 True 873 lncRNA 0.43 2 27184532 27185647

Neighbor

gene id symbol gene type direction distance location
LOC110485162 LOC106605541 coding downstream 267360 26911398 ~ 26917150 (-)
LOC110485134 LOC106605538 coding downstream 321085 26858411 ~ 26863425 (-)
LOC110485118 cndp1 coding downstream 326141 26849743 ~ 26858369 (-)
LOC110485107 LOC106605539 coding downstream 345388 26834664 ~ 26839122 (-)
LOC110534567 cf113 coding downstream 369851 26794149 ~ 26814659 (-)
LOC110485460 LOC106605533 coding upstream 937 27203190 ~ 27215402 (-)
LOC110485403 NA coding upstream 13719 27215972 ~ 27231128 (-)
LOC110485245 ubr5 coding upstream 29285 27231538 ~ 27278158 (-)
LOC110485483 LOC106605528 coding upstream 106261 27308514 ~ 27317719 (-)
LOC110533720 LOC106605543 coding upstream 179088 27381341 ~ 27385479 (-)
G127607 NA non-coding downstream 43790 27140502 ~ 27140720 (-)
G127596 NA non-coding downstream 53617 27130539 ~ 27130893 (-)
G127579 NA non-coding downstream 65837 27118446 ~ 27118673 (-)
G127504 NA non-coding downstream 139818 27044416 ~ 27044692 (-)
G127477 NA non-coding downstream 166063 27018105 ~ 27018447 (-)
G127945 NA non-coding upstream 87991 27290244 ~ 27293324 (-)
G127905 LOC106579140 non-coding upstream 119221 27321474 ~ 27331163 (-)
G127991 NA non-coding upstream 165638 27367891 ~ 27369610 (-)
G128001 NA non-coding upstream 187335 27389588 ~ 27389825 (-)
G128003 NA non-coding upstream 188616 27390869 ~ 27392647 (-)
LOC110539285 LOC106579350 other downstream 521496 26641958 ~ 26675649 (-)
G127083 NA other downstream 622383 26561614 ~ 26562127 (-)
G125305 NA other downstream 2407883 24775220 ~ 24776627 (-)
LOC110538887 LOC106605647 other downstream 2649981 24531424 ~ 24540898 (-)
G125043 NA other downstream 2859674 24324580 ~ 24324836 (-)
G129250 NA other upstream 563904 27766157 ~ 27766532 (-)
LOC110485663 LOC106579570 other upstream 894429 27933389 ~ 28149986 (-)
G129582 NA other upstream 1108066 28310319 ~ 28310732 (-)
LOC110534614 LOC106605399 other upstream 1274933 28475823 ~ 28533709 (-)

Expression


Co-expression Network