LOC110485460 (LOC106605533)


Basic Information

Item Value
gene id LOC110485460
gene name LOC106605533
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27203190 ~ 27215402 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556532.2
ATGATGGGAACATTATTCTCGAAACAACTAGTTACATCACCGGCTCTTGATCCTATCCAGCTCAGGTCACATGCTCCAATGTTTGCTACTTGCCTGAGTTGATCGCTAGAGCCGGCGTGAGAGTGTTATCGCTAATTGCAGACGACACCGCGCTTGCCGGAGAAGAAATTCACTTCGATCTATTTGGATTGTTTATCATTAACAGTTAGATATAGATATCTGTGAAGTGCCTCATCCTTGGATTGTAAAATATGATTTCCCCGTGGGACCGATGGCATTCCACCAGATGCTGCCTGTGCTGTCATGTCCGCACGGGCACTGTTATCCTGGGGGTTTGGTATATGCTGATCAATGCGGTGGTGTTACTCATCCTCGTCACGGCCCTGGGTGATCCTGACCAGTACCATCTGACCAGCGCTGAGCTGGCTAACGACTTAGATGACATGGATGACGCCAACATGTGTATTGCTTCAGCGATCTCGTTGCTGATGATACTAATTTCTGGGATGGCGACCTACGGTGCGTATAAGcaacaTGCTGCTTGGATCATCCCATTCTTCTGCTACCAAGTCTTTGACTGTGCACTGAACACCCTGGTGGCTGTTAGTATTGTGGTCTACCCCAACACCATACAAGATTACCTCCAACAGCTGCCTGAGAACTTCCCCTACAAAGAGGACATCATGGCCATGAGCAATGTGTGCTTGGTCTTCATCGTGCTCCTCTTCATCGGATGCATTCTCACCTTCAAGGCGTACCTGATAGCGTGTGTGTGGAACTGCTACCGGTATGTGCGTGCAAGAAGCACCACAGAAGTCCTGATATACGTCACTACTAATGACACCACGGTGGCGTCACTCCTACACGACGCTAAGCCCTCGAACAGAGCAGATGGAGTCGCGctatctgacGTACTGTTACCCCCATATGATGACACCATGTCTATTCCATCCAAGAACGCTCCTCCCCCCTATGGGGCACCCTACATAGCATGAAGAACCTGGGCCGCTGTTCTGCTGACCAACTGGACCCCTTGTTACTACAGCAACCTGACATTCCAACCAGACCTGGGTCAACAAataatatttgttttctttccaatACACTATGCATTTTATAGTTGGCATTTGATAACTGTCACACTGGGTGTGTGGTGTTAGCAGTAGTTTAATAAAgtttacaaatatatatactttGACCCAGGCCCCAATACCACTGATTATTTCCAAAACATTTAACCTGCACACATTGACTTACTTACCTGTTACTGTGATACTGTTTAACATTATACTGTTTATTTGGAGTTATTTATTTTCACTGATCTACAGTTGAAACATCGAGCAGGAAAGAGTTCAAATATGAGCGCGCTAGTAGTGTGTGTAATAGAAGATATATATTTTCTTGCTTGTACTAAACTGTACTTCTACTTGTTCTCTACTGTCAGTCCTAGTCCAAAGGCCACCCACCAGAAACGGGTTTCCATGGTCTATGAAGCGAGTACTTGTGAGAGACCTACACAAATCAAATCAGGCACTgattatatataaaaaatatatatattgcccATGATttaggctggtcccagatctgtatgtGCATTGTCATGTATGGCATGACGATTACAGTCAGAGAAGTTGGCTAAAGCACACACAGATCTGGAAACAGGCAAGTGGGGATTGTATCCTCGACTCAAAATATTTATTTGTTCTGCCCATgatcactgttcgttgttggatTTCCTTTACAAACAACTTCCTTTCTGATTAGGGTGCACTGAGAGATGTATGAAGTGTTGCTATGCGCGGAAGGATCCCAAAGATTTAAAGCACCTGCCTGTAATCTAACAGATGATCGAAGAGCAGAAGTCATATCACCAAGTTACTCGTACGttattgtttagtgtgtgtagAAAACTGTCATTATCCTGAATTATtacaacaggacagtgttgagTTTACCTTTATTTTAAAGGTGGAGTTTTAGGACTTGTACATTTGATCTTATATCTGTGTTGATTCCAATAAAGTAAAAAGTGGTGGTCCTGTTTTTTGAATTAAGCCAATGTAAGCGGACTGGTCTGCTCTGCTGGATGCAGTTATTGGCAAGCTGTTCCCCAGACGGGGGATGTCCTCTGAGGACTCCGTCACATTTAACCGTCTGCTGCTGCAGcataaaaatacaatatttatttgtccattaaaaacacatttaattgACGGACA
>XM_021556536.2
ATGATGGGAACATTATTCTCGAAACAACTAGTTACATCACCGGCTCTTGATCCTATCCAGCTCAGGTCACATGCTCCAATGTTTGCTACTTGCCTGAGTTGATCGCTAGAGCCGGCGTGAGAGTGTTATCGCTAATTGCAGACGACACCGCGCTTGCCGGAGAAGAAATTCACTTCGATCTATTTGGATTGTTTATCATTAACAGTTAGATATAGATATCTGTGAAGTGCCTCATCCTTGGATTGTAAAATATGATTTCCCCGTGGGACCGATGGCATTCCACCAGATGCTGCCTGTGCTGTCATGTCCGCACGGGCACTGTTATCCTGGGGGTTTGGTATATGCTGATCAATGCGGTGGTGTTACTCATCCTCGTCACGGCCCTGGGTGATCCTGACCAGTACCATCTGACCAGCGCTGAGCTGGCTAACGACTTAGATGACATGGATGACGCCAACATGTGTATTGCTTCAGCGATCTCGTTGCTGATGATACTAATTTCTGGGATGGCGACCTACGGTGCGTATAAGcaacaTGCTGCTTGGATCATCCCATTCTTCTGCTACCAAGTCTTTGACTGTGCACTGAACACCCTGGTGGCTGTTAGTATTGTGGTCTACCCCAACACCATACAAGATTACCTCCAACAGCTGCCTGAGAACTTCCCCTACAAAGAGGACATCATGGCCATGAGCAATGTGTGCTTGGTCTTCATCGTGCTCCTCTTCATCGGATGCATTCTCACCTTCAAGGCGTACCTGATAGCGTGTGTGTGGAACTGCTACCGGTATGTGCGTGCAAGAAGCACCACAGAAGTCCTGATATACGTCACTACTAATGACACCACGGTACTGTTACCCCCATATGATGACACCATGTCTATTCCATCCAAGAACGCTCCTCCCCCCTATGGGGCACCCTACATAGCATGAAGAACCTGGGCCGCTGTTCTGCTGACCAACTGGACCCCTTGTTACTACAGCAACCTGACATTCCAACCAGACCTGGGTCAACAAataatatttgttttctttccaatACACTATGCATTTTATAGTTGGCATTTGATAACTGTCACACTGGGTGTGTGGTGTTAGCAGTAGTTTAATAAAgtttacaaatatatatactttGACCCAGGCCCCAATACCACTGATTATTTCCAAAACATTTAACCTGCACACATTGACTTACTTACCTGTTACTGTGATACTGTTTAACATTATACTGTTTATTTGGAGTTATTTATTTTCACTGATCTACAGTTGAAACATCGAGCAGGAAAGAGTTCAAATATGAGCGCGCTAGTAGTGTGTGTAATAGAAGATATATATTTTCTTGCTTGTACTAAACTGTACTTCTACTTGTTCTCTACTGTCAGTCCTAGTCCAAAGGCCACCCACCAGAAACGGGTTTCCATGGTCTATGAAGCGAGTACTTGTGAGAGACCTACACAAATCAAATCAGGCACTgattatatataaaaaatatatatattgcccATGATttaggctggtcccagatctgtatgtGCATTGTCATGTATGGCATGACGATTACAGTCAGAGAAGTTGGCTAAAGCACACACAGATCTGGAAACAGGCAAGTGGGGATTGTATCCTCGACTCAAAATATTTATTTGTTCTGCCCATgatcactgttcgttgttggatTTCCTTTACAAACAACTTCCTTTCTGATTAGGGTGCACTGAGAGATGTATGAAGTGTTGCTATGCGCGGAAGGATCCCAAAGATTTAAAGCACCTGCCTGTAATCTAACAGATGATCGAAGAGCAGAAGTCATATCACCAAGTTACTCGTACGttattgtttagtgtgtgtagAAAACTGTCATTATCCTGAATTATtacaacaggacagtgttgagTTTACCTTTATTTTAAAGGTGGAGTTTTAGGACTTGTACATTTGATCTTATATCTGTGTTGATTCCAATAAAGTAAAAAGTGGTGGTCCTGTTTTTTGAATTAAGCCAATGTAAGCGGACTGGTCTGCTCTGCTGGATGCAGTTATTGGCAAGCTGTTCCCCAGACGGGGGATGTCCTCTGAGGACTCCGTCACATTTAACCGTCTGCTGCTGCAGcataaaaatacaatatttatttgtccattaaaaacacatttaattgACGGACA

Function

NR:

description
lysosomal-associated transmembrane protein 4B-like isoform X2

GO: NA

KEGG:

id description
K12387 LAPTM; lysosomal-associated transmembrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556532.2 False 2222 mRNA 0.44 8 27203190 27215402
XM_021556536.2 True 2159 mRNA 0.43 7 27203190 27215402

Neighbor

gene id symbol gene type direction distance location
LOC110485234 LOC106605534 coding downstream 937 27184510 ~ 27202253 (-)
LOC110485162 LOC106605541 coding downstream 286040 26911398 ~ 26917150 (-)
LOC110485134 LOC106605538 coding downstream 339765 26858411 ~ 26863425 (-)
LOC110485118 cndp1 coding downstream 344821 26849743 ~ 26858369 (-)
LOC110485107 LOC106605539 coding downstream 364068 26834664 ~ 26839122 (-)
LOC110485403 NA coding upstream 570 27215972 ~ 27231128 (-)
LOC110485245 ubr5 coding upstream 16136 27231538 ~ 27278158 (-)
LOC110485483 LOC106605528 coding upstream 93112 27308514 ~ 27317719 (-)
LOC110533720 LOC106605543 coding upstream 165939 27381341 ~ 27385479 (-)
LOC110485571 oxr1 coding upstream 204244 27419646 ~ 27633110 (-)
G127607 NA non-coding downstream 62470 27140502 ~ 27140720 (-)
G127596 NA non-coding downstream 72297 27130539 ~ 27130893 (-)
G127579 NA non-coding downstream 84517 27118446 ~ 27118673 (-)
G127504 NA non-coding downstream 158498 27044416 ~ 27044692 (-)
G127945 NA non-coding upstream 74842 27290244 ~ 27293324 (-)
G127905 LOC106579140 non-coding upstream 106072 27321474 ~ 27331163 (-)
G127991 NA non-coding upstream 152489 27367891 ~ 27369610 (-)
G128001 NA non-coding upstream 174186 27389588 ~ 27389825 (-)
G128003 NA non-coding upstream 175467 27390869 ~ 27392647 (-)
LOC110539285 LOC106579350 other downstream 540176 26641958 ~ 26675649 (-)
G127083 NA other downstream 641063 26561614 ~ 26562127 (-)
G125305 NA other downstream 2426563 24775220 ~ 24776627 (-)
LOC110538887 LOC106605647 other downstream 2668661 24531424 ~ 24540898 (-)
G125043 NA other downstream 2878354 24324580 ~ 24324836 (-)
G129250 NA other upstream 550755 27766157 ~ 27766532 (-)
LOC110485663 LOC106579570 other upstream 881280 27933389 ~ 28149986 (-)
G129582 NA other upstream 1094917 28310319 ~ 28310732 (-)
LOC110534614 LOC106605399 other upstream 1261784 28475823 ~ 28533709 (-)

Expression


Co-expression Network