LOC110485500 (LOC106579140)


Basic Information

Item Value
gene id LOC110485500
gene name LOC106579140
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27321550 ~ 27331169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556584.2
AGAGGCCTTTCTGTTCCTCATCTGATCAGCTGACATGAATGTGATGCTGCTGGAAAGACCTTTAGTCTTACGATTTGATTGGCAATTATGAATATTGAACCATAGGAATTGTACGGTAGTAATTGATTAGTGTTCGAATAGTTTTGTCATTAGATCTCAGCACCCATCTCTGTGCATTTCGTTTTGAGCCTGTAGTCATCAGTGTATAGCCATGACAGAGTTCTGGTTGATCTCAGCTCCTGGAGAGAAGACCTGCCAGCAGACATGGGACCAGATGATGGTGGCTACCACCCGCAACAACAACCTGTCCACCAACAACAAGTTCAACATCCCAGACCTCAAGGTGGGGACACTAGATGTGTTAGTTGGGctgtcagatgacctggccaaaCTGGACTCCTTTATCGAAGGtgtggtgaagaaggtgtcTCAGTACATGGCTGATGTGTTGGAGGACAGCCGAGACAAAGTCCAGGAGAACCTGCTGGCCAACGGAGTGGATCTGGTGACCTACATCACACGGTTTCAGTGGGACATGGCCAAGTACCCCATCAAGCAGTCACTGAAGAACATCTCTGATATCATATCCAAGCAAGTAAGCCAGATTGACAACGACCTGAAGGCCAGAGCGTCTGCCTACAACAACTTGAAAGGGAACCTGCAGAATCTGGAGAGAAAGAATGCGGGGAGCCTGCTGACCAGGAGTCTGGCTGACATTGTCAAGAAGGAGGACTTTGTGATTGACTCAGAGTATCTGATCACTATGTTGGTGGTTGTACCAAAGACGAGTTATGTTGACTGGCAGAAGACCTATGAAACGTTGTCTGAAATGGTGGTACCCCGATCCACTAACCTGCTGTTTGAGGACCATGACAGTGGTCTGTTCAGCGTCACCCTATTCAGGAAGGCCATTGATGACTTCAGACACAAGGCCAGAGAGAAcaaGTACACAGTCAGGGACTTCCAGTACAACGAGCAGGAGATGAATGCGGACAAAGAGGAGATGACACGTCTCTCCACAGACAAGAAGAAGCAGTTTGGGCCACTGGTGCGATGGCTGAAAGTGAACTTCAGTGAGGCCTTCATCGCATGGATTCACATCAAGGCTCTGAGGGTCTTTGTGGAGTCTGTCTTAAGATATGGGCTGCCTGTGAACTTCCAGGCCATGCTGCTCCAGCCCAACAAGAAGAACATGAAGAAACTGAGGGAGGTTCTCAATGACCTATACAAACACCTGGACAGCAGCGCTGCAGCTGTCATTGATTCCGCCATGGATATCCCTGGTCTGAACCTGAGCCAGCAGGAGTACTACCCTTATGTTTACTACAAGATAGACTGCAACCTGCTGGACTTTAAATAGATTTTCACTGTACCTGACCCCTCTGTTCTGTCTTGTCTTTATGCTGAGTACCCACTAACTTGTGTTTTCCTGTAAATCTTTCTCCCAGTCTTGCTCTTTTCTCCTTTCTCTGCCCtgctatctcctctcctctctaatcgtcctctcctctcctcatgtctGGGTGATACTGTTTATCCTTGCTCTCCTCAGATGTGCATGCTCATTCCTTGTGGTTTAAAGCACTTAGTGACCCCCTCCATCTGTACAAACTGAGGACAAACAATGGCTTGATGTAAATTTTGTTGGTTTTgtttacagatttttttttaaacagcataatcaaagTACACTGTATTTAaatgcccagtgcagtcaaaaatgtgattttcctgtgtttttatatagatttccacactgaggttggaacgATATTGTGGAATAAGGCCATTTTAGTGTAAGAtagaaatttcagcctgttttggtgggatggagttttcgGCTGACTGGtgactaattaattaattaatagaaCAATATGAAagtgttccaaacctctgccaataacagctagtttacATTTTTCCATCCCCAATCCAAAAACAGTCCTAGtcaaattcttgcttgagaaattgctcatGCTAAAATCCTATTTTTTGTTACTTTTTGACCATTTTGaaaattttaattgaaaacaatcacagtatttaattgttacccagaaatgatttgatgttgagataaaacagctgcattgggcctttaactgTGTGCTGAAACGAATAAGATCTCTAAATATTTATTTCTGGTAGTTTATGCATTTTCAATCATTCCACGTCTGTGTTGTGCATATTGATAGCTACATCTTTGAGTGGTACTATTCATAGATacttgtgtatgtgaccaatttgtTCTTTTACCTGCACATCTAAGCACATCTGGTACATGTTCATGAGGTATTGGTTCACCTTGGCATCAAATAGTGTTACAAAGATGCTATATTTGTGTGTTATCTCATGTTGTGTATATTTGATGTTAAAAGAGATATATGAATGTGTAAGCATTATATATGCTATGAATAGATAAAACAGTCAATATGAAGAAAA

Function

NR:

description
V-type proton ATPase subunit C 1-A

GO:

id name namespace
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02148 ATPeV1C, ATP6C; V-type H+-transporting ATPase subunit C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556584.2 True 2445 mRNA 0.43 13 27321550 27331169

Neighbor

gene id symbol gene type direction distance location
LOC110485466 LOC106605529 coding upstream 17906 27288172 ~ 27303644 (+)
LOC110485224 rn146 coding upstream 138991 27178987 ~ 27182559 (+)
LOC110485212 LOC106605536 coding upstream 145803 27147880 ~ 27175747 (+)
LOC110485187 LOC106605537 coding upstream 387072 26917395 ~ 26934478 (+)
LOC110533712 NA coding upstream 412383 26904901 ~ 26909167 (+)
LOC110485507 LOC106579115 coding downstream 528 27331697 ~ 27380409 (+)
LOC110485543 LOC106579099 coding downstream 59421 27390590 ~ 27403425 (+)
LOC110485528 LOC106605545 coding downstream 72496 27403665 ~ 27408989 (+)
LOC110485563 LOC106579093 coding downstream 78596 27409765 ~ 27419165 (+)
LOC110485628 LOC106605483 coding downstream 320442 27651611 ~ 27678014 (+)
G127699 LOC106605528 non-coding upstream 9054 27310567 ~ 27312496 (+)
G127697 LOC106605528 non-coding upstream 11510 27308528 ~ 27310040 (+)
G127712 NA non-coding upstream 37862 27283390 ~ 27283688 (+)
G127709 NA non-coding upstream 40830 27280518 ~ 27280720 (+)
G127702 ubr5 non-coding upstream 50827 27270133 ~ 27270723 (+)
G127767 NA non-coding downstream 57373 27388542 ~ 27388818 (+)
G127775 NA non-coding downstream 92882 27424051 ~ 27429021 (+)
G127824 NA non-coding downstream 188818 27519987 ~ 27569509 (+)
G128160 NA non-coding downstream 334855 27666024 ~ 27666362 (+)
G128163 LOC106605482 non-coding downstream 351265 27682434 ~ 27682656 (+)
G127644 LOC106605534 other upstream 130957 27189991 ~ 27190593 (+)
G127198 LOC106605538 other upstream 460308 26857698 ~ 26861242 (+)
G127190 cf113 other upstream 525788 26794210 ~ 26795762 (+)
G128185 NA other downstream 385313 27716482 ~ 27717163 (+)
G128436 NA other downstream 757478 28088647 ~ 28089445 (+)
G128490 NA other downstream 919673 28250842 ~ 28547915 (+)
LOC110485990 LOC106579931 other downstream 1600887 28931988 ~ 28951235 (+)
G128853 LOC106605419 other downstream 1608730 28939899 ~ 28981288 (+)

Expression


Co-expression Network