LOC110533720 (LOC106605543)


Basic Information

Item Value
gene id LOC110533720
gene name LOC106605543
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27381341 ~ 27385479 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618192.2
TGGAAACTCCCAAAACAGTCTGAGCATACCGCCAGCATTAGGGACTTTTATTTCAGAAATGTTGCTACCGCAGCCTATAAAAATTACCGACAACCGATTGCACAGCCTATTTCTCTGTCGTGTAGCCTATATCGTTCTGTCAAATTAACAATTATGTTACAATGTAACGAAAAAGGCGAGATTTTACCTGAAAGGAGCTTACAACTTCAGTTACACGCTCTTAGCAAATCTATGTCATGCTGTGCAGTGGAAAGGCTGTGCGTGTACTTGTTGAGCTCCAGGACCATCACAGAGTATGAGAGCCAGGTGATCTGGTCCCAGAGAACAGACATGGAGAAGGCTGCCAAACTGCTCCAGGTGGTGCTGAAGAAGGGTCGCAATGCCTGTCTGCTCTTTTTCGACTCACTAGAAAAGTGTTGCCAGTGCCCACTACAGTTCGAAAGAGTCACCGGCCTCCCAGagaggaggaggaccaaCACTGCCCCAACTTACGTCATCAACATCAGCCATTCCAATTTGAGTAACTGCATCATTGGAGATGGCAACTTTCAAGGAGTGACAATGTGTATACAACAACCTCAGAGCATGGGTTCAGAGGATGCTAGGCATGAGACAATGGGAGGCAACATCACCAGTGATCACCAGAGAGCAGTACAGGCCTGTCCAGATCCAGAGCTCCAGAGTAGTGTCCAGGTCTACGGGTCCCAACTGCAGTATGTCATCATCGGGGACAACAACAACCTGCAGGCTGAAGACACACcgggagaggaagaaggggaagaAGAAAAACTCATTAATGAAAGTAACTGATTAGATTTGTGTAGTGCTTTTCCAGATGCTCAAAGTGGTTTACATTGTATTGGGGAAACTCCCCTCATACACCACCAACTAGTTTCcatttaagtcatttagcagactcttttatccagagtgacttacaggagcaattagggcacatcgacagatttttcacctagtcgcgTCAGcaattcaaaccagtgacctttcagttactggcccaacactcttaaccgctaggttacctgcctctgGTGCCAAAGGTTTCATGTTTGAATCCAGTGATAGAAAGTTCTacttgagatttttgttttaagcctatcccaaaccataacccttaccttaaccattcagagttaatgcctaaactttaATGTCTAAACTAGTTGTTGTGTGGCACTGCATCAGTATCCTATCAGAGCCATACATATCATATATGCATTTAAACTCTTATATCCTAGATGCCATCTCCTGCTGTTGTGCGCTTGAGCAAGTTACTGCACCACAGGCGACCGTGGCTCTCAATCGCAATAAGTGATATGGGGACAAAATGTATGGCCATTGGCTACATTGTAATGTTCCTTGCTGTGTCGATGAACTTGATTTCTGGGGAATGTATATGTACTGTAAATTGTAGTGTATTGTTTGGATAGTATAACTTAACCCTACATAATCAAAGAATGAACCATATTTTTGGTCCGTAGATCTATGGAATAAGTATTGAATCATACAGTACCTAGATTATGTTCTGTGAACCCAATTTATAATGACCGCACGGACcgctgaccactgaccactgaccactgaccgctgaccactgaccactgaccactgaccactggccGCTGACcgctgaccactga

Function

NR:

description
uncharacterized protein LOC110533720

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618192.2 True 1661 mRNA 0.45 4 27381341 27385479

Neighbor

gene id symbol gene type direction distance location
LOC110485483 LOC106605528 coding downstream 63622 27308514 ~ 27317719 (-)
LOC110485245 ubr5 coding downstream 103183 27231538 ~ 27278158 (-)
LOC110485403 NA coding downstream 150213 27215972 ~ 27231128 (-)
LOC110485460 LOC106605533 coding downstream 165939 27203190 ~ 27215402 (-)
LOC110485234 LOC106605534 coding downstream 179088 27184510 ~ 27202253 (-)
LOC110485571 oxr1 coding upstream 34167 27419646 ~ 27633110 (-)
LOC110485644 LOC106579058 coding upstream 292829 27678308 ~ 27825113 (-)
LOC110534585 LOC106605382 coding upstream 542185 27927664 ~ 27931710 (-)
LOC110485663 LOC106579570 coding upstream 547910 27933389 ~ 28149986 (-)
LOC110485705 LOC106605396 coding upstream 767010 28152489 ~ 28164855 (-)
G127991 NA non-coding downstream 11731 27367891 ~ 27369610 (-)
G127905 LOC106579140 non-coding downstream 50178 27321474 ~ 27331163 (-)
G127945 NA non-coding downstream 88017 27290244 ~ 27293324 (-)
G127607 NA non-coding downstream 240621 27140502 ~ 27140720 (-)
G128001 NA non-coding upstream 4109 27389588 ~ 27389825 (-)
G128003 NA non-coding upstream 5390 27390869 ~ 27392647 (-)
G128027 NA non-coding upstream 86519 27471998 ~ 27472270 (-)
G128046 NA non-coding upstream 115978 27501457 ~ 27501791 (-)
G128086 NA non-coding upstream 192045 27577524 ~ 27584211 (-)
LOC110539285 LOC106579350 other downstream 718327 26641958 ~ 26675649 (-)
G127083 NA other downstream 819214 26561614 ~ 26562127 (-)
G125305 NA other downstream 2604714 24775220 ~ 24776627 (-)
LOC110538887 LOC106605647 other downstream 2846812 24531424 ~ 24540898 (-)
G129250 NA other upstream 380678 27766157 ~ 27766532 (-)
G129582 NA other upstream 924840 28310319 ~ 28310732 (-)
LOC110534614 LOC106605399 other upstream 1091707 28475823 ~ 28533709 (-)
LOC110486376 LOC106605451 other upstream 2483567 29859575 ~ 29878744 (-)

Expression


Co-expression Network