LOC110485543 (LOC106579099)


Basic Information

Item Value
gene id LOC110485543
gene name LOC106579099
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27390590 ~ 27403425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944072.1
CATTATTCTCGGCTCTCTGAAGGGAAGAGTTTGACTATCAGTAAAATCATAGTGTACCTTGCTCTCTACGGTCATCcaattcaatatatatatatcactcccATCATCCTTGCACCTTCCGTCAGAAAGCTATTAACGAGCAAACCCCGGATATCGAAagtaaaaacacatttactgcaATATTCTACCCAACCAGGATATATCACAAGAGAAGCTTCTGTGGATTTGTAACAATAAGATTCATTATGTAGTCAAAAAGGACGAACTCCTGAGATCATGGAGCACAGCCCTCCACACTTCCTCCAGCAGAAGGGCTAAGAGAAGCTTCCAGGCAGTGCTGACTGACCGCTCTGCTCCCCCCATGGCCAACAACAGCAGTCCAGACCAGGGCCAGAGTCAGGGTCAGGGCCCCATAGCCAACAGCAGTCCATCCCAGCCTCTGGGCCAGGCCGGGGCTGTAGTGGCCTCCTCCACCCAGCCTAATGTGGTGGTCTACTGCAAGCTGTGCCTTAGTGAGCACCCCTCAGCAGCAACCAGCACGCTGCACACCTGTGACTGTGTCTTCTGCACCCCGTGTCTGCAGCAGTATGTTCAGCTGGCCATCCGGGAGGGTGGGGGCAGCCCGGTCACATGTCCAGACATGGCTTGTCAGAGGACAGGAGTCCTACTCCACTCAGAGATAGCCTGTTTTGCCCCTGCGGATCAGGTTGAGCTGTACCAGCGGCTGGAGTTTGAACGAGGGGTGCAGCTGGACCctagtagagcatggtgcccaGTGCTGGAGTGCCAGGCTGTCTGCAGCGTTGGGCCCAGCTCAGAGGGCCAGCCTACATCCGTGCCCTGTCCAGCCTGCCACACCGTCTTCTGCTCTGGCTGTAGAGGGCCCTGGCAGGGCGGGCACGCCTGCCCTGATCACCAGCCTATGACATCATCATCGCCTGCCTCAGAGAgcagTGACTCTGATCTGCCCATCAAGCAGTGCCCCATGTGTGGTGTGTACATCGAGAGGAACCAAGGCTGTGCCCAGATGCTGTGTAAGAGCTGCAAACACACCTTCTGTTGGTACTGTCTGCAGAACCTGGATGGTGATATATTTCTGAGGCACTATGATAAGGGTCCATGCAGAAACAAGCTGGGCCACTCCCGAGCCTCCGTCATGTGGAACAGAACACAGGTGGTGGGCATCCTGGTTGGCGTCAGTGTCATCGTGCTGttggcctctcctctcctcctgctggcTTCACCCTGCGTCCTGTGCTGCCTGTGCAAGCCCTGCCGAGGcaaaaagaagaggaggaagaagaaagagctcacacagacagacatacagccaGAACTCAGTCCCACCAAGTCATAAAGAGACTGCTCCTTCTTCTCACCACGGTCTGGGAATGGATCCATTCAGTCAGTTCAGGCACTGATTTTAATTCATGAATGGAAACATCTTTATTGAAAAGAATGGGGTAATTTTCAACTCATTGAATTTTAAATAATGTATTGAATTGACAGAATTGAAAACTGACTAGTACCCTGATTCCcaccatctcacacacacatacagtacaggacCACTGTCTACCACCCTCATGTGCCAAACGTCACGATGCCAAACCAGTCTTGTTACAGTAGGTGCACAAGTGCCTCCATCCTACAGTGCCTGGTATTTGGTGGTATTTGTTTTGCCTTCCATTATATTATGCAAAAGTGTATGTTGTTTATGAAAAGAATGACTGTAAGTAACATAAGTAACATAACGACTGTAAGTAACATCCTTAACCAATGCAAAACATGGTTTCATAATGTGCTGTGGAAACTGCATTGTGCACTGTATTGGGTACTGGGAGAAAAAtgtgtacatcccaaatggcaccctattccctacatagtatacaaCTTTTGACCAGTCCCTGGGGTGCCATTTTGAAAGTAACCAATGATATAGGGCTTCAAAGGTGCACATATAAATATTTTCTGCTGCTGACAGATTCCACCTGGGATTCCAGACCAAATTTCTGTTGGAttctatatactactactactataatgtaTGTAAATATGTATTTATGGAATAGTGTATATGGTGTTCTGTCTTGTTTCTACTTTTTTTCGTTGATGTTTCTGCATCAGATATTTTGTAAAAGATCAATTGTAATTGAAATAAACAACAGATATTGAACATGC
>XM_036944070.1
TGCTTTTAGGTTTTTGCTTTTGCTTTTTTTTCTATGCAAGCCGCCAGGGGCAGGCTAGAGGACATTCCACCAATAGCCTACCGCTTCCTGGTCAAGTAAGCAGCAGGCAGGGCAGCAAGAACATCGTTGGCGGAACAATACTATACACACCCCCCCGTCCATCTGGAAACACGGGACGGACTGTGCATACCAACACTGATTGCGTTGGTGACTGTAGGCCAGGCAGGCAGGTGTGTCTAGTGCAGTTGGAAGAAAGAGGTAAATGGGTGGTGCTTGTGTGAATATCGTGGCGACCGAGCGGAGGTGTTTTGTAGGTGACTGTGTATCAACAGATGTGCATGTGTCCTAGTAAAAGCACTGCGGCTTTTAATCTGGACAGAAGCAGCTCGTAGGCTACACGAAGTAGGGGACCTGACCGAGgagATCATGGAGCACAGCCCTCCACACTTCCTCCAGCAGAAGGGCTAAGAGAAGCTTCCAGGCAGTGCTGACTGACCGCTCTGCTCCCCCCATGGCCAACAACAGCAGTCCAGACCAGGGCCAGAGTCAGGGTCAGGGCCCCATAGCCAACAGCAGTCCATCCCAGCCTCTGGGCCAGGCCGGGGCTGTAGTGGCCTCCTCCACCCAGCCTAATGTGGTGGTCTACTGCAAGCTGTGCCTTAGTGAGCACCCCTCAGCAGCAACCAGCACGCTGCACACCTGTGACTGTGTCTTCTGCACCCCGTGTCTGCAGCAGTATGTTCAGCTGGCCATCCGGGAGGGTGGGGGCAGCCCGGTCACATGTCCAGACATGGCTTGTCAGAGGACAGGAGTCCTACTCCACTCAGAGATAGCCTGTTTTGCCCCTGCGGATCAGGTTGAGCTGTACCAGCGGCTGGAGTTTGAACGAGGGGTGCAGCTGGACCctagtagagcatggtgcccaGTGCTGGAGTGCCAGGCTGTCTGCAGCGTTGGGCCCAGCTCAGAGGGCCAGCCTACATCCGTGCCCTGTCCAGCCTGCCACACCGTCTTCTGCTCTGGCTGTAGAGGGCCCTGGCAGGGCGGGCACGCCTGCCCTGATCACCAGCCTATGACATCATCATCGCCTGCCTCAGAGAgcagTGACTCTGATCTGCCCATCAAGCAGTGCCCCATGTGTGGTGTGTACATCGAGAGGAACCAAGGCTGTGCCCAGATGCTGTGTAAGAGCTGCAAACACACCTTCTGTTGGTACTGTCTGCAGAACCTGGATGGTGATATATTTCTGAGGCACTATGATAAGGGTCCATGCAGAAACAAGCTGGGCCACTCCCGAGCCTCCGTCATGTGGAACAGAACACAGGTGGTGGGCATCCTGGTTGGCGTCAGTGTCATCGTGCTGttggcctctcctctcctcctgctggcTTCACCCTGCGTCCTGTGCTGCCTGTGCAAGCCCTGCCGAGGcaaaaagaagaggaggaagaagaaagagctcacacagacagacatacagccaGAACTCAGTCCCACCAAGTCATAAAGAGACTGCTCCTTCTTCTCACCACGGTCTGGGAATGGATCCATTCAGTCAGTTCAGGCACTGATTTTAATTCATGAATGGAAACATCTTTATTGAAAAGAATGGGGTAATTTTCAACTCATTGAATTTTAAATAATGTATTGAATTGACAGAATTGAAAACTGACTAGTACCCTGATTCCcaccatctcacacacacatacagtacaggacCACTGTCTACCACCCTCATGTGCCAAACGTCACGATGCCAAACCAGTCTTGTTACAGTAGGTGCACAAGTGCCTCCATCCTACAGTGCCTGGTATTTGGTGGTATTTGTTTTGCCTTCCATTATATTATGCAAAAGTGTATGTTGTTTATGAAAAGAATGACTGTAAGTAACATAAGTAACATAACGACTGTAAGTAACATCCTTAACCAATGCAAAACATGGTTTCATAATGTGCTGTGGAAACTGCATTGTGCACTGTATTGGGTACTGGGAGAAAAAtgtgtacatcccaaatggcaccctattccctacatagtatacaaCTTTTGACCAGTCCCTGGGGTGCCATTTTGAAAGTAACCAATGATATAGGGCTTCAAAGGTGCACATATAAATATTTTCTGCTGCTGACAGATTCCACCTGGGATTCCAGACCAAATTTCTGTTGGAttctatatactactactactataatgtaTGTAAATATGTATTTATGGAATAGTGTATATGGTGTTCTGTCTTGTTTCTACTTTTTTTCGTTGATGTTTCTGCATCAGATATTTTGTAAAAGATCAATTGTAATTGAAATAAACAACAGATATTGAACATGC

Function

NR:

description
E3 ubiquitin-protein ligase RNF144B-like

GO: NA

KEGG:

id description
K11975 RNF144; E3 ubiquitin-protein ligase RNF144

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944072.1 False 2181 mRNA 0.48 8 27390590 27403425
XM_036944070.1 True 2331 mRNA 0.50 8 27390874 27403425

Neighbor

gene id symbol gene type direction distance location
LOC110485507 LOC106579115 coding upstream 10181 27331697 ~ 27380409 (+)
LOC110485500 LOC106579140 coding upstream 59421 27321550 ~ 27331169 (+)
LOC110485466 LOC106605529 coding upstream 86946 27288172 ~ 27303644 (+)
LOC110485224 rn146 coding upstream 208031 27178987 ~ 27182559 (+)
LOC110485212 LOC106605536 coding upstream 214843 27147880 ~ 27175747 (+)
LOC110485528 LOC106605545 coding downstream 240 27403665 ~ 27408989 (+)
LOC110485563 LOC106579093 coding downstream 6340 27409765 ~ 27419165 (+)
LOC110485628 LOC106605483 coding downstream 248186 27651611 ~ 27678014 (+)
LOC110534576 dpys coding downstream 504364 27907789 ~ 27909986 (+)
LOC110485682 LOC106605395 coding downstream 761735 28165160 ~ 28171323 (+)
G127767 NA non-coding upstream 1772 27388542 ~ 27388818 (+)
G127699 LOC106605528 non-coding upstream 78094 27310567 ~ 27312496 (+)
G127697 LOC106605528 non-coding upstream 80550 27308528 ~ 27310040 (+)
G127712 NA non-coding upstream 106902 27283390 ~ 27283688 (+)
G127709 NA non-coding upstream 109870 27280518 ~ 27280720 (+)
G127775 NA non-coding downstream 20626 27424051 ~ 27429021 (+)
G127824 NA non-coding downstream 116562 27519987 ~ 27569509 (+)
G128160 NA non-coding downstream 262599 27666024 ~ 27666362 (+)
G128163 LOC106605482 non-coding downstream 279009 27682434 ~ 27682656 (+)
G128165 NA non-coding downstream 282163 27685588 ~ 27685805 (+)
G127644 LOC106605534 other upstream 199997 27189991 ~ 27190593 (+)
G127198 LOC106605538 other upstream 529348 26857698 ~ 26861242 (+)
G127190 cf113 other upstream 594828 26794210 ~ 26795762 (+)
G128185 NA other downstream 313057 27716482 ~ 27717163 (+)
G128436 NA other downstream 685222 28088647 ~ 28089445 (+)
G128490 NA other downstream 847417 28250842 ~ 28547915 (+)
LOC110485990 LOC106579931 other downstream 1528631 28931988 ~ 28951235 (+)
G128853 LOC106605419 other downstream 1536474 28939899 ~ 28981288 (+)

Expression


Co-expression Network