LOC110485528 (LOC106605545)


Basic Information

Item Value
gene id LOC110485528
gene name LOC106605545
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27403665 ~ 27408989 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556627.2
GGAGTTTGGGAATGACAGTTAGCGTTGACCAAAGAAGACGGTGATAAGGCTGACTAGTTTGTGGGTTTTGAAAGGCGGTTTGATGCTGTCAAACGGGACCAAAAAATACTATTTTGACAAAAAATCTTAAACGGTTATTGTTCTGCTGGTTTCCAGAGACACCTTGTGGTAGATGTGAAGATTGCGTTTCTTATTTTAATTCAAGACGAAGTGGAACTTCGAGGGGAAAACTCAGAGATGATCTGAAGTTCTTAAAAGTATTTGACATCGCTATGGAAACAGAATTCTTTGCTGGTATTCCGAAGATTCCTTATATACCCAACGCTGGAGCTCGAAACGTCTTGTGTTTCCAACATTACAATGCAGAAGAAGTGCTGCTGGGCAGACGTATGGAGGACTGGCTGAGATTCTCAGTCTGTTACTGGCACTCCTTCTGTGGGACTGGTGCcgacccttttgggttccagacaCAACACAGACCCTGGAATGAGGGTGCTACCCCCATGGAATGTGCCAAGAAGAGACTCCATGCAGCCTTTGAGTTCTTCACCAAACTTGGTGTGAAGTACTACACCTTTCATGACAGGGACATGTCCCCTGAGGGAAGCACTCTGGAGGAGTCCAACAGCAACCTGGATGAGATGACAGACCTGGCCCTGCAGCTGCAGAATAGGACTGGGGTCAAGGTGCTGTGGGTCACCTGCAATCTGTTTGCTCACTCAAGGTACATGAATGGAGCAGCAACCAACCCTGACTGCCATGTTTTGGCCTATGCTGGGGCCCAGGTGAAGAAAGGACTGGATGTAGCCAAGAAGCTGGGAGCAGAGAACTTTGTCTTCTGGGGCGGCAGGGAGGGTTTTTATTCGATACACAACACTGATGTTGGCGCTGAACTGAAACATATGGCAAACTTTTTCAAAATGACTGTCAAGTACAAGGAGAAGATAGGGTTGAAGTGCCAGTTCCTCATTGAACCCAAGCCCAAAGAGCCATGCAAACATCAATACGACTATGATGCAATGAGTGTCATAGGCTTCCTGAAGCATTATGACCTGGACAGCCATTTCAAACTGAACATCGAACCCAACCACACCACTCTGGCTGGGCATTCCTATGAACACGATGTCGTCATGGCCTCTGTGTTTGGCATGCTGGGCTCTGTGGACTCCAACACGGGTTCTCCTGACCTGGGCTGGGACACAGACCAGTTCCCCATGGACATCAGGAACACCACCATGATAATGAAGACTGTGATAGAGCAGGGTGGTCTGCAGCCGGGGGGTCTGAACTTCGATGCTAAGGTGCGTAGGGAGTCCACGGACTTGGAGGACCTGTTCATAGCCCACGTCGGAGCCATGGACGCCTTCGCACGCGGCCTGAGGAACGCAGTCAGGATCATAGAGGAAGGAGTTATCACCAGCATGGTCAAGGAGCGCTACATGAGCTTCAGCCATGGGATTGGTCAGAAAGTAGAGGATGGCAGCACATCATTGGAGGAGCTGGAGGACTTTGTCAAGCAAAATGGGGAGCCCAAAGTCACATCAGGCAAACAGGAGAAATATGAAACAGTCTTTAACCACTACCTTTGAAGACATGTGGTGAAGTCTTGTTTGACCATGAAACCCCTTGTCCTGAGTGGTATAGTGTCCATCCAGACCTTTCATAATAGTATGCTTAGAGAGTGATATAGTTTCACATGACTAACTATTATTACAGTTATAGTATAAATAATTAATCAGTGGAGGAGTCTTGTGAATGTGGACTATTTTAATGCACACTCCTGTAATGTTGACATATGATTTGAATAATGAGGCCATCAGTGGTAAAGACCAGAAATATGAATTTAATTTAGTATAAATTACATGGCATTTCAAATACTGAATTAAGGAATTAACTAATTGATCAGTTTTTTATACTGGAGTTGAATAAAAAGAAGCAAACCCTA
>XM_021556635.2
GGAGTTTGGGAATGACAGTTAGCGTTGACCAAAGAAGACGGTGATAAGGCTGACTAGTTTGTGGGTTTTGAAAGGCGGTTTGATGCTGTCAAACGGGACCAAAAAATACTATTTTGACAAAAAATCTTAAACGGTTATTGTTCTGCTGGTTTCCAGAGACACCTTGTGGTAGATGTGAAGATTGCGTTTCTTATTTTAATTCAAGACGAAGTGGAACTTCGAGGGGAAAACTCAGAGATGATCTGAAGTTCTTAAAAGTATTTGACATCGCTATGGAAACAGAATTCTTTGCTGTGAGACTCTACCTCCTTTACACACCTGAATGATCCCAACTGAGGTTTTCCCAGCAGGCTTCATGTAACTGTTTACCTGTGCAGGTGCTGCTGGGCAGACGTATGGAGGACTGGCTGAGATTCTCAGTCTGTTACTGGCACTCCTTCTGTGGGACTGGTGCcgacccttttgggttccagacaCAACACAGACCCTGGAATGAGGGTGCTACCCCCATGGAATGTGCCAAGAAGAGACTCCATGCAGCCTTTGAGTTCTTCACCAAACTTGGTGTGAAGTACTACACCTTTCATGACAGGGACATGTCCCCTGAGGGAAGCACTCTGGAGGAGTCCAACAGCAACCTGGATGAGATGACAGACCTGGCCCTGCAGCTGCAGAATAGGACTGGGGTCAAGGTGCTGTGGGTCACCTGCAATCTGTTTGCTCACTCAAGGTACATGAATGGAGCAGCAACCAACCCTGACTGCCATGTTTTGGCCTATGCTGGGGCCCAGGTGAAGAAAGGACTGGATGTAGCCAAGAAGCTGGGAGCAGAGAACTTTGTCTTCTGGGGCGGCAGGGAGGGTTTTTATTCGATACACAACACTGATGTTGGCGCTGAACTGAAACATATGGCAAACTTTTTCAAAATGACTGTCAAGTACAAGGAGAAGATAGGGTTGAAGTGCCAGTTCCTCATTGAACCCAAGCCCAAAGAGCCATGCAAACATCAATACGACTATGATGCAATGAGTGTCATAGGCTTCCTGAAGCATTATGACCTGGACAGCCATTTCAAACTGAACATCGAACCCAACCACACCACTCTGGCTGGGCATTCCTATGAACACGATGTCGTCATGGCCTCTGTGTTTGGCATGCTGGGCTCTGTGGACTCCAACACGGGTTCTCCTGACCTGGGCTGGGACACAGACCAGTTCCCCATGGACATCAGGAACACCACCATGATAATGAAGACTGTGATAGAGCAGGGTGGTCTGCAGCCGGGGGGTCTGAACTTCGATGCTAAGGTGCGTAGGGAGTCCACGGACTTGGAGGACCTGTTCATAGCCCACGTCGGAGCCATGGACGCCTTCGCACGCGGCCTGAGGAACGCAGTCAGGATCATAGAGGAAGGAGTTATCACCAGCATGGTCAAGGAGCGCTACATGAGCTTCAGCCATGGGATTGGTCAGAAAGTAGAGGATGGCAGCACATCATTGGAGGAGCTGGAGGACTTTGTCAAGCAAAATGGGGAGCCCAAAGTCACATCAGGCAAACAGGAGAAATATGAAACAGTCTTTAACCACTACCTTTGAAGACATGTGGTGAAGTCTTGTTTGACCATGAAACCCCTTGTCCTGAGTGGTATAGTGTCCATCCAGACCTTTCATAATAGTATGCTTAGAGAGTGATATAGTTTCACATGACTAACTATTATTACAGTTATAGTATAAATAATTAATCAGTGGAGGAGTCTTGTGAATGTGGACTATTTTAATGCACACTCCTGTAATGTTGACATATGATTTGAATAATGAGGCCATCAGTGGTAAAGACCAGAAATATGAATTTAATTTAGTATAAATTACATGGCATTTCAAATACTGAATTAAGGAATTAACTAATTGATCAGTTTTTTATACTGGAGTTGAATAAAAAGAAGCAAACCCTA
>XM_036944079.1
agtgtttatatttaggtgcagcagcgccacaatacttttgagccaatattctataagaggaacaggagatcAAGCAgcagaacatttgagGTATTCCGAAGATTCCTTATATACCCAACGCTGGAGCTCGAAACGTCTTGTGTTTCCAACATTACAATGCAGAAGAAGTGCTGCTGGGCAGACGTATGGAGGACTGGCTGAGATTCTCAGTCTGTTACTGGCACTCCTTCTGTGGGACTGGTGCcgacccttttgggttccagacaCAACACAGACCCTGGAATGAGGGTGCTACCCCCATGGAATGTGCCAAGAAGAGACTCCATGCAGCCTTTGAGTTCTTCACCAAACTTGGTGTGAAGTACTACACCTTTCATGACAGGGACATGTCCCCTGAGGGAAGCACTCTGGAGGAGTCCAACAGCAACCTGGATGAGATGACAGACCTGGCCCTGCAGCTGCAGAATAGGACTGGGGTCAAGGTGCTGTGGGTCACCTGCAATCTGTTTGCTCACTCAAGGTACATGAATGGAGCAGCAACCAACCCTGACTGCCATGTTTTGGCCTATGCTGGGGCCCAGGTGAAGAAAGGACTGGATGTAGCCAAGAAGCTGGGAGCAGAGAACTTTGTCTTCTGGGGCGGCAGGGAGGGTTTTTATTCGATACACAACACTGATGTTGGCGCTGAACTGAAACATATGGCAAACTTTTTCAAAATGACTGTCAAGTACAAGGAGAAGATAGGGTTGAAGTGCCAGTTCCTCATTGAACCCAAGCCCAAAGAGCCATGCAAACATCAATACGACTATGATGCAATGAGTGTCATAGGCTTCCTGAAGCATTATGACCTGGACAGCCATTTCAAACTGAACATCGAACCCAACCACACCACTCTGGCTGGGCATTCCTATGAACACGATGTCGTCATGGCCTCTGTGTTTGGCATGCTGGGCTCTGTGGACTCCAACACGGGTTCTCCTGACCTGGGCTGGGACACAGACCAGTTCCCCATGGACATCAGGAACACCACCATGATAATGAAGACTGTGATAGAGCAGGGTGGTCTGCAGCCGGGGGGTCTGAACTTCGATGCTAAGGTGCGTAGGGAGTCCACGGACTTGGAGGACCTGTTCATAGCCCACGTCGGAGCCATGGACGCCTTCGCACGCGGCCTGAGGAACGCAGTCAGGATCATAGAGGAAGGAGTTATCACCAGCATGGTCAAGGAGCGCTACATGAGCTTCAGCCATGGGATTGGTCAGAAAGTAGAGGATGGCAGCACATCATTGGAGGAGCTGGAGGACTTTGTCAAGCAAAATGGGGAGCCCAAAGTCACATCAGGCAAACAGGAGAAATATGAAACAGTCTTTAACCACTACCTTTGAAGACATGTGGTGAAGTCTTGTTTGACCATGAAACCCCTTGTCCTGAGTGGTATAGTGTCCATCCAGACCTTTCATAATAGTATGCTTAGAGAGTGATATAGTTTCACATGACTAACTATTATTACAGTTATAGTATAAATAATTAATCAGTGGAGGAGTCTTGTGAATGTGGACTATTTTAATGCACACTCCTGTAATGTTGACATATGATTTGAATAATGAGGCCATCAGTGGTAAAGACCAGAAATATGAATTTAATTTAGTATAAATTACATGGCATTTCAAATACTGAATTAAGGAATTAACTAATTGATCAGTTTTTTATACTGGAGTTGAATAAAAAGAAGCAAACCCTA

Function

NR:

description
xylose isomerase-like isoform X1

GO: NA

KEGG:

id description
K01805 xylA; xylose isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556627.2 False 1945 mRNA 0.46 14 27403665 27408989
XM_021556635.2 False 1951 mRNA 0.46 13 27403665 27408989
XM_036944079.1 True 1741 mRNA 0.47 14 27405057 27408989

Neighbor

gene id symbol gene type direction distance location
LOC110485543 LOC106579099 coding upstream 240 27390590 ~ 27403425 (+)
LOC110485507 LOC106579115 coding upstream 23256 27331697 ~ 27380409 (+)
LOC110485500 LOC106579140 coding upstream 72496 27321550 ~ 27331169 (+)
LOC110485466 LOC106605529 coding upstream 100021 27288172 ~ 27303644 (+)
LOC110485224 rn146 coding upstream 221106 27178987 ~ 27182559 (+)
LOC110485563 LOC106579093 coding downstream 776 27409765 ~ 27419165 (+)
LOC110485628 LOC106605483 coding downstream 242622 27651611 ~ 27678014 (+)
LOC110534576 dpys coding downstream 498800 27907789 ~ 27909986 (+)
LOC110485682 LOC106605395 coding downstream 756171 28165160 ~ 28171323 (+)
LOC110485672 LOC106605394 coding downstream 762857 28171846 ~ 28180205 (+)
G127767 NA non-coding upstream 14847 27388542 ~ 27388818 (+)
G127699 LOC106605528 non-coding upstream 91169 27310567 ~ 27312496 (+)
G127697 LOC106605528 non-coding upstream 93625 27308528 ~ 27310040 (+)
G127712 NA non-coding upstream 119977 27283390 ~ 27283688 (+)
G127709 NA non-coding upstream 122945 27280518 ~ 27280720 (+)
G127775 NA non-coding downstream 15062 27424051 ~ 27429021 (+)
G127824 NA non-coding downstream 110998 27519987 ~ 27569509 (+)
G128160 NA non-coding downstream 257035 27666024 ~ 27666362 (+)
G128163 LOC106605482 non-coding downstream 273445 27682434 ~ 27682656 (+)
G128165 NA non-coding downstream 276599 27685588 ~ 27685805 (+)
G127644 LOC106605534 other upstream 213072 27189991 ~ 27190593 (+)
LOC110485212 LOC106605536 other upstream 243020 27147880 ~ 27175747 (+)
G127198 LOC106605538 other upstream 542423 26857698 ~ 26861242 (+)
G127190 cf113 other upstream 607903 26794210 ~ 26795762 (+)
G128185 NA other downstream 307493 27716482 ~ 27717163 (+)
G128436 NA other downstream 679658 28088647 ~ 28089445 (+)
G128490 NA other downstream 841853 28250842 ~ 28547915 (+)
LOC110485990 LOC106579931 other downstream 1523067 28931988 ~ 28951235 (+)
G128853 LOC106605419 other downstream 1530910 28939899 ~ 28981288 (+)

Expression


Co-expression Network