LOC110485563 (LOC106579093)


Basic Information

Item Value
gene id LOC110485563
gene name LOC106579093
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27409765 ~ 27419165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944084.1
TCCAGTATACGACACACTGAGAAAGCCATCGCCATCTGCGCCGATTCAACATAGCCTACATTTACGATTGTATTACTTCTTAAAATAACTTTTTGGGGCTCTCATAAGCTTACAACTATGTTTTGATTCTTGCTTGAACAGTCGCTAAGATTATTTGGTTGTGATAGTTGCAAAATAGCTATTTTGGATGCAgcagttgttagctagaatgctaacgctcATTGATATTGGCTATAGCAAAagccattttactggttgaaggtgaaatgtttttaaaaaaagtataatgcagttgatttgcGATGATGACACAAGCATTactattaagcaggacattcatacaAGGTTTAAAatccaattataatccaaaagtagtatgaaatgcactcataagcaacATGTAAATATAGGCTTTTCCCCCCATGTTCTATAAGAACTTCCCCTTGATCTGTCACTAAATTTCGCGTATCGCCATCGCGAGgcaatgtttgcaaacacagaaACCTGTCCATGGACACCTTTCCAGTGACATCATATCATACTATCCTCTCTCAGCCAGCGCTCCAACCAGCAGCCGAGGATTGGCCAATGGCCAGATAGCGTGAGCTCTGCTCACCGATGTGCTGTTCCTGATTGGACGGTTCAGGTACAGAGAGGGCGGGACACCAAACCTGCGAACCCGAAGTTCCTACCTATCTCATTATCATATAATATTTAGCATCATCTGAAACCATCTGAAATGTCTGGTGGAATAATTGTAATGGTTTTGAATACTTTTCTTTTTGATTAACGGATATATTTGAAATATTACTAGGCCTACGATCTGCTAAAGCAACTGAAATAGGATGCTCAATTGTCTACGCCAGTAGATAGAATATTTGCTATTTTTGAAATAACTGTTGAACTGTGATATTTTATTGCGTACTTTATTCTATTCCATGATCTCGGCTACTTTTTGTTTTTGCAATTTAGTTTCAGGTTATAGGTTAGGAAACATTCTGAGCAGTGGTAATTTATTGCATGAGTTAGCCTAATCATTTCAAGTAGCCTAgtttaataatataataaatatgtgGACTTTTCTTGGAATTGCAAGTTTCACCTACATTTATAAGAAATGCGACGCAGTTTTGGAGTATGCTCACAAAGAGATAATCCTGGCGGCTGTAGTGTTCTTGGCAGTGGGGATGCTGCTATCCTATGTCAGGTACCACGGACATACATGCAAGGTACCCCAAATTCTACAATTACCGCTGGAACTTTTATTATCCCTACCGGTCATCAATACATTTATACCGAAACCCTCAGCTGTCAGGCACAGGAGTGGAGAGAGCGCGTCAAAGAAGGGAGGTGGCAGGAGGAAAAGAGTGTGTTCCTCAGCCATGGAGAGCCCCCCAGCAACAGGGGACTCTCCTGCATCTCAGGAGCCGGATGTGATCATAGTAGGGGCGGGAGTCCTGGGGTCGGCCATGGCTGTAGTGCTGGCCCGGGACGGCCGGAGGGTCACTGTGATAGAGAGGGACCTGAAGGAGCCTGACAGGATAGTGGGAGAGCTGCTGCAGCCTGGTGGATACAGGGCCCTGCGAGCACTGGGAATGGAGGGTTCAGTGGAGGGGCTGGATGCCCACGTGGTGAACGGCTATGTGATTCATGACATCGAGAGCAGCACAGAGGTGGAGATCCCATATCCCCAGGCAGACAGCAGTATCCAGTGTGGCAGGGCCTTTCACCACGGACGCTTTATCATGGGTCTGCGCAGAGCCGCCCTCGCTGAGCCAAATGTTACGCTCATTGAAGGCACCGTGTCCAGCCTGGAGGAAGAGGATGGCTGTGTGACAGGAGTGCAGTACAGGGAAAAGGAGACAGGAGACACAAAGGAGGTCCATGCAGCAgtaactgtagtagctgacggCTGTTTCTCAAAGTTCAGGAAGAGCCTGGTAGCCGGGAAGGCCCAGACCTCCTCTCACTTTGTTGGATGTATCATGAAGAACTCTCCCCAGTTCAAGCCCCACCATGCTGAGCTGGTCCTGGCTAACCCCAGCCCTGTCCTCATCTACCAGATCTCCTCCTCAGACACCAGGGTGCTGGTGGACATCAGGGGAGAGATGCCCAGGAACCTCACCGAGTACATGGCTGAGAAAATACACCCACAACTACCAGAACACCTAAAGGAGCCGTTCATGGTGGCTCTGCAGAACGACCGGCTGAGGTCTATGCCAGCAAGCTTCCTGCCTCCGTCCCCAGTCAACAAGCCAGGTGTGCTCCTGCTGGGTGACGCCTACAACATGAGACACCCTCTGACCGGAGGAGGGATGAGTGTGGCCCTCAACGACGTCCTGATCTGGAGGAGCCTGATGAAGAACATCCCTGACCTGTACGACAACACAGCCATGCTCCAGGCAAAGAAAAAATTCCACTGGGAACGCAAGTCATCACATTCCTTTGTGGTGAATGTGTTGGCTCAAGCCCTGTACGAGTTGTTTGCTGCAACAGACAATTCTCTCCACCAGCTGAGAAAGGCATGCTTCCTTTACTTCAAGCTGGGTGGGGAGTGCGTCAACGGTCCCATTGGTCTTCTCTCAGTGTTGACGCCCCATCCGATGACTCTGATTGGACACTTCTTTGCCGTGGCCTTGTACGCCATCTACTACAACTTCAAGTCTGAGTCGTGGTTCACCAAACCCCGAGCCTTATTCACGAGTGGAGCTATCCTGTACCGCGCCTGTACCGTCATGTTTCCCCTCATCTACTCTGAGTTCAAGTACCTGGTGTACTGAGCAGTGATCTAATCTGAGCCCTAACCCAGTGGAACACACACCAGCCTTAGACaacagggtcgtattcattagtgcacaaacgtagcaaaacattttgcaatggaatACGAAGATGTTCAGGTTTGCCCCTACCCTCTTTCTGCCTGTTTTCTTCCAATTAGTTTCTTGTGAATACATTTACTGAGCATCACGGACCCCTGATGgagaacgaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccgaaagtGTAGTTAACTGTCAAGTCAATTTGGCTGTATGTATGATTTATATGAAACCACTTAGTTTTAGGCCAACAATTATGCTTTTTTGTTGGGTGTGGGGAGGCATGCCACTTTCTGTCCAATGATGTAATTTCTGGACAATGTTTCTGTGAATTTACGCAAGGGATCCCTTTTGTCTCAAGCACACCCCTAGAGGCAAAAGTTCTGTATAGCCTCTTTAATATTACACCATCCTATCATCACTGTCAACAGGGATCTTGTACAGGTCTCTAAAGTGACCATTATTCAGTGCTGAAGCCTTTGACCTTGATCATATGTCTTTATCTCTGCCTAAAGGTCTGCCCAATGATAAGACGTCTTCTGAGGACGAGGTCTAAATTGACGGTGACAATTATTTAGTAATGCCTTGTATATTCAGAATTTACATCACAACCATGCATTTACGTAGTGTAACAGACAATGCGTAAGAGGTTTGCATTAGCAACTCTTAATTGCAAATAACCAGCAGGACTGACTACAGGTGTCTGTTTAACCACTTTGCTGCTAATTGAACATGAGGACAAAACATGTCCTTCCTGCTTGTGTTCTATCTTCTCTCCATGCCAATGGCTCAAAAAACAGTTGGCTCTTTGTCTACCCTTATTCCAAACGGTATCCTTATTTTGTTCTGAAAAAGCATGTTCCTTGTGCATTATTTTAACTGTACATGTACAATCAAATGATTATGTATTAAACTGTTTGATTGGTTCAAGTCAGATCACCTGTCCTTAACTTTTGCCAAGTTATAGTTTTCCTGCCTTAAATGGGGTTTTACACATTGTGACAAGGGATCCACCCCAACACATCTCTGGTACTTGTTTAAAAAGTGATTCTTCAGTTGTGAACACCTGCTGGAATAAAAGTGTGACTTAA
>XM_036944088.1
GCAAGGTACCCCAAATTCTACAATTACCGCTGGAACTTTTATTATCCCTACCGGTCATCAATACATTTATACCGAAACCCTCAGCTGTCAGGCACAGGAGTGGAGAGAGCGCGTCAAAGAAGCTTTTTCTCTAAACAGGGAGGTGGCAGGAGGAAAAGAGTGTGTTCCTCAGCCATGGAGAGCCCCCCAGCAACAGGGGACTCTCCTGCATCTCAGGAGCCGGATGTGATCATAGTAGGGGCGGGAGTCCTGGGGTCGGCCATGGCTGTAGTGCTGGCCCGGGACGGCCGGAGGGTCACTGTGATAGAGAGGGACCTGAAGGAGCCTGACAGGATAGTGGGAGAGCTGCTGCAGCCTGGTGGATACAGGGCCCTGCGAGCACTGGGAATGGAGGGTTCAGTGGAGGGGCTGGATGCCCACGTGGTGAACGGCTATGTGATTCATGACATCGAGAGCAGCACAGAGGTGGAGATCCCATATCCCCAGGCAGACAGCAGTATCCAGTGTGGCAGGGCCTTTCACCACGGACGCTTTATCATGGGTCTGCGCAGAGCCGCCCTCGCTGAGCCAAATGTTACGCTCATTGAAGGCACCGTGTCCAGCCTGGAGGAAGAGGATGGCTGTGTGACAGGAGTGCAGTACAGGGAAAAGGAGACAGGAGACACAAAGGAGGTCCATGCAGCAgtaactgtagtagctgacggCTGTTTCTCAAAGTTCAGGAAGAGCCTGGTAGCCGGGAAGGCCCAGACCTCCTCTCACTTTGTTGGATGTATCATGAAGAACTCTCCCCAGTTCAAGCCCCACCATGCTGAGCTGGTCCTGGCTAACCCCAGCCCTGTCCTCATCTACCAGATCTCCTCCTCAGACACCAGGGTGCTGGTGGACATCAGGGGAGAGATGCCCAGGAACCTCACCGAGTACATGGCTGAGAAAATACACCCACAACTACCAGAACACCTAAAGGAGCCGTTCATGGTGGCTCTGCAGAACGACCGGCTGAGGTCTATGCCAGCAAGCTTCCTGCCTCCGTCCCCAGTCAACAAGCCAGGTGTGCTCCTGCTGGGTGACGCCTACAACATGAGACACCCTCTGACCGGAGGAGGGATGAGTGTGGCCCTCAACGACGTCCTGATCTGGAGGAGCCTGATGAAGAACATCCCTGACCTGTACGACAACACAGCCATGCTCCAGGCAAAGAAAAAATTCCACTGGGAACGCAAGTCATCACATTCCTTTGTGGTGAATGTGTTGGCTCAAGCCCTGTACGAGTTGTTTGCTGCAACAGACAATTCTCTCCACCAGCTGAGAAAGGCATGCTTCCTTTACTTCAAGCTGGGTGGGGAGTGCGTCAACGGTCCCATTGGTCTTCTCTCAGTGTTGACGCCCCATCCGATGACTCTGATTGGACACTTCTTTGCCGTGGCCTTGTACGCCATCTACTACAACTTCAAGTCTGAGTCGTGGTTCACCAAACCCCGAGCCTTATTCACGAGTGGAGCTATCCTGTACCGCGCCTGTACCGTCATGTTTCCCCTCATCTACTCTGAGTTCAAGTACCTGGTGTACTGAGCAGTGATCTAATCTGAGCCCTAACCCAGTGGAACACACACCAGCCTTAGACaacagggtcgtattcattagtgcacaaacgtagcaaaacattttgcaatggaatACGAAGATGTTCAGGTTTGCCCCTACCCTCTTTCTGCCTGTTTTCTTCCAATTAGTTTCTTGTGAATACATTTACTGAGCATCACGGACCCCTGATGgagaacgaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccgaaagtGTAGTTAACTGTCAAGTCAATTTGGCTGTATGTATGATTTATATGAAACCACTTAGTTTTAGGCCAACAATTATGCTTTTTTGTTGGGTGTGGGGAGGCATGCCACTTTCTGTCCAATGATGTAATTTCTGGACAATGTTTCTGTGAATTTACGCAAGGGATCCCTTTTGTCTCAAGCACACCCCTAGAGGCAAAAGTTCTGTATAGCCTCTTTAATATTACACCATCCTATCATCACTGTCAACAGGGATCTTGTACAGGTCTCTAAAGTGACCATTATTCAGTGCTGAAGCCTTTGACCTTGATCATATGTCTTTATCTCTGCCTAAAGGTCTGCCCAATGATAAGACGTCTTCTGAGGACGAGGTCTAAATTGACGGTGACAATTATTTAGTAATGCCTTGTATATTCAGAATTTACATCACAACCATGCATTTACGTAGTGTAACAGACAATGCGTAAGAGGTTTGCATTAGCAACTCTTAATTGCAAATAACCAGCAGGACTGACTACAGGTGTCTGTTTAACCACTTTGCTGCTAATTGAACATGAGGACAAAACATGTCCTTCCTGCTTGTGTTCTATCTTCTCTCCATGCCAATGGCTCAAAAAACAGTTGGCTCTTTGTCTACCCTTATTCCAAACGGTATCCTTATTTTGTTCTGAAAAAGCATGTTCCTTGTGCATTATTTTAACTGTACATGTACAATCAAATGATTATGTATTAAACTGTTTGATTGGTTCAAGTCAGATCACCTGTCCTTAACTTTTGCCAAGTTATAGTTTTCCTGCCTTAAATGGGGTTTTACACATTGTGACAAGGGATCCACCCCAACACATCTCTGGTACTTGTTTAAAAAGTGATTCTTCAGTTGTGAACACCTGCTGGAATAAAAGTGTGACTTAA

Function

NR:

description
squalene monooxygenase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004506 squalene monooxygenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K00511 SQLE, ERG1; squalene monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944084.1 False 4105 mRNA 0.46 11 27409765 27419165
XM_036944088.1 True 2897 mRNA 0.49 11 27410989 27419165

Neighbor

gene id symbol gene type direction distance location
LOC110485528 LOC106605545 coding upstream 776 27403665 ~ 27408989 (+)
LOC110485543 LOC106579099 coding upstream 6340 27390590 ~ 27403425 (+)
LOC110485507 LOC106579115 coding upstream 29356 27331697 ~ 27380409 (+)
LOC110485500 LOC106579140 coding upstream 78596 27321550 ~ 27331169 (+)
LOC110485466 LOC106605529 coding upstream 106121 27288172 ~ 27303644 (+)
LOC110485628 LOC106605483 coding downstream 232446 27651611 ~ 27678014 (+)
LOC110534576 dpys coding downstream 488624 27907789 ~ 27909986 (+)
LOC110485682 LOC106605395 coding downstream 745995 28165160 ~ 28171323 (+)
LOC110485672 LOC106605394 coding downstream 752681 28171846 ~ 28180205 (+)
ddr1 LOC106605397 coding downstream 775397 28194562 ~ 28250766 (+)
G127767 NA non-coding upstream 20947 27388542 ~ 27388818 (+)
G127699 LOC106605528 non-coding upstream 97269 27310567 ~ 27312496 (+)
G127697 LOC106605528 non-coding upstream 99725 27308528 ~ 27310040 (+)
G127712 NA non-coding upstream 126077 27283390 ~ 27283688 (+)
G127709 NA non-coding upstream 129045 27280518 ~ 27280720 (+)
G127775 NA non-coding downstream 4886 27424051 ~ 27429021 (+)
G127824 NA non-coding downstream 100822 27519987 ~ 27569509 (+)
G128160 NA non-coding downstream 246859 27666024 ~ 27666362 (+)
G128163 LOC106605482 non-coding downstream 263269 27682434 ~ 27682656 (+)
G128165 NA non-coding downstream 266423 27685588 ~ 27685805 (+)
G127644 LOC106605534 other upstream 219172 27189991 ~ 27190593 (+)
LOC110485212 LOC106605536 other upstream 249120 27147880 ~ 27175747 (+)
G127198 LOC106605538 other upstream 548523 26857698 ~ 26861242 (+)
G127190 cf113 other upstream 614003 26794210 ~ 26795762 (+)
G128185 NA other downstream 297317 27716482 ~ 27717163 (+)
G128436 NA other downstream 669482 28088647 ~ 28089445 (+)
G128490 NA other downstream 831677 28250842 ~ 28547915 (+)
LOC110485990 LOC106579931 other downstream 1512891 28931988 ~ 28951235 (+)
G128853 LOC106605419 other downstream 1520734 28939899 ~ 28981288 (+)

Expression


Co-expression Network