LOC110485628 (LOC106605483)


Basic Information

Item Value
gene id LOC110485628
gene name LOC106605483
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27651611 ~ 27678014 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036074.1
GTTAAACTtcatagaagaagaagacgaagagaaGGCGGCGGCGGCAGTAGTGGCAGTGAACACCGAACACTAATTTATGCTGCAGTCTCGCCTCTGAGCTAAAAGCATTGTTGTCCCATTTCGGCGTCTGTACATTTCCAGGAAGTTCTAGCAAACGCGGTGCATTCATTCAATCCTGTGAATTCACATCCCGGTTTCAGctggtagatagatagatacatagatagatatatagtTTATAGAATACTTTATTATAACTTGACACTCAAAAATGCGCAGAAGGACAGACGGTCAAGAAGCCACTGGAGATGCTAGGACAGACAAaaagactgacagacagactgcagGTTCAGGAGAGaccagtcaacaacaacaacaacatcgacCACAACAAGGGGCTAAAACGAGCAGGTGCTGGTCGACTGTTACCTCAGTTGGAAAatgtctcctcctcatcatcctcatcccTCCCTTTCTGAACTATGCATCATTGCAAAGAGAGGGCCAACTGTTACTGCCAGAAGGTGGTGAAATTATAGATATCGGTTTAGGTCAAAAGATGCACCTGATGTGCAAAGGACAAGGACAGCCAGTTGTCATACTGGATGCCCCCACTGGTATGTCCTCTGACATCTGGTTCCATGTACAAGAGAACATTGCACTGCTAACCAAGGTGTGCACTTATGACAGAGTGGGACTGGGGTTCAGTAAAAGAGTCCTGCAGAATGAAAGTACAGGGACGGAGAAAGTCTGGGGGATGTCAACCACTGGACGAATGGTGGACAACCTCCACCGCCTCATCGGTTTAGCTGGTCTAGCCACGCCTCTCATCCTGGTGGGGTCTGAACTGGGCACGCTCAACGCCAGGTTCTACAGCCATATCCATGACGCGCAGGTGTCAGACCTTGTCCTTATTGATCCCATTCCAGAGGACATCTTTGAGGAGGACCAGTGGCAGAAGTACTGGTACAGTCAGCTGGTGCCATCCCTCCAAGCTATGCAATTCTCAGCTGCCACAGGCATCAGCCGCATCCTCATCATTCTGGGGCTGCTAAAGCCAGCCATCATGGGGGACAACATCGCTGAAGACCTCATACAGAGACAGAAGTACCTCCTCAGTAACCCCGCCCACCAGAGCAGTGCTGTAGATGAACATTTTTTCCTGAATGAAAGTGCTTCTCAAGTCAGGGAAATCTCCAAATTCAAACCCCTCTCTAGTAGGACTTCTGTGAGTGTGATTATTGGGGATTCTTTTGATGAGCAAATTCCTGCTGCTCTAAACCAATAGGACTCCCAGGCAACCCGGCACCTCACCGAAGAACCTTGACCATTGTTCCGCCGTCTTTGGGAATTCGAGAAAGTCGGGTGGACGGTGTGACTACCAAGCAATTCATATTCCAATAGTTCTACCTGGGGGGTATGAAGTAATGCACAAAACAAACTGAATGGTGGCCCAGCTTCAGAAGACGTTACTGGAGCAGACTTACCCCTCAGCCAACCAGATCCATGTTAAAGGAGGGGACCGCAGGATGATCTACAAGAGGCCATCTGTTGTTAGCGAACACCTGTTGAAGCTGGTGTCCCAAC
>XM_021556734.2
GTTAAACTtcatagaagaagaagacgaagagaaGGCGGCGGCGGCAGTAGTGGCAGTGAACACCGAACACTAATTTATGCTGCAGTCTCGCCTCTGAGCTAAAAGCATTGTTGTCCCATTTCGGCGTCTGTACATTTCCAGGAAGTTCTAGCAAACGCGGTGCATTCATTCAATCCTGTGAATTCACATCCCGGTTTCAGctggtagatagatagatacatagatagatatatagtTTATAGAATACTTTATTATAACTTGACACTCAAAAATGCGCAGAAGGACAGACGGTCAAGAAGCCACTGGAGATGCTAGGACAGACAAaaagactgacagacagactgcagGTTCAGGAGAGaccagtcaacaacaacaacaacatcgacCACAACAAGGGGCTAAAACGAGCAGGTGCTGGTCGACTGTTACCTCAGTTGGAAAatgtctcctcctcatcatcctcatcccTCCCTTTCTGAACTATGCATCATTGCAAAGAGAGGGCCAACTGTTACTGCCAGAAGGTGGTGAAATTATAGATATCGGTTTAGGTCAAAAGATGCACCTGATGTGCAAAGGACAAGGACAGCCAGTTGTCATACTGGATGCCCCCACTGGTATGTCCTCTGACATCTGGTTCCATGTACAAGAGAACATTGCACTGCTAACCAAGGTGTGCACTTATGACAGAGTGGGACTGGGGTTCAGTAAAAGAGTCCTGCAGAATGAAAGTACAGGGACGGAGAAAGTCTGGGGGATGTCAACCACTGGACGAATGGTGGACAACCTCCACCGCCTCATCGGTTTAGCTGGTCTAGCCACGCCTCTCATCCTGGTGGGGTCTGAACTGGGCACGCTCAACGCCAGGTTCTACAGCCATATCCATGACGCGCAGGTGTCAGACCTTGTCCTTATTGATCCCATTCCAGAGGACATCTTTGAGGAGGACCAGTGGCAGAAGTACTGGTACAGTCAGCTGGTGCCATCCCTCCAAGCTATGCAATTCTCAGCTGCCACAGGCATCAGCCGCATCCTCATCATTCTGGGGCTGCTAAAGCCAGCCATCATGGGGGACAACATCGCTGAAGACCTCATACAGAGACAGAAGTACCTCCTCAGTAACCCCGCCCACCAGAGCAGTGCTGTAGATGAACATTTTTTCCTGAATGAAAGTGCTTCTCAAGTCAGGGAAATCTCCAAATTCAAACCCCTCTCTAGTAGGACTTCTGTGAGTGTGATTATTGGGGATTCTTTTGATGAGCAAATTCCTGCTGCTCTAAACCAAATGGTGGCCCAGCTTCAGAAGACGTTACTGGAGCAGACTTACCCCTCAGCCAACCAGATCCATGTTAAAGGAGGGGACCGCAGGATGATCTACAAGAGGCCATCTGTTGTTAGCGAACACCTGTTGAAGCTGGTGTCCCAACGGCAGTCCAAACAGCAGAGCCAATGACCATAGAGATCTATAGAAGACATCTAGTTCTATTGCTCTAATTTCAAGGTTCAAATTCTGTGCCAGTGACACACTGATTCTGCTGATAAATGTCTCAACTACACTCACAACTGGAAGATGAAGTCATATGTCAGAGGTTCCATGTTTAGTTTTTTTCCAGTGATGATTTTTGACAGGAACACATGTCAAGTACAAATATTAGACAGTTTTGCCTTAATGtttgtaaataaataataaagtcTTCTGAATTTG
>XM_036944150.1
TAGCTCGGTTAGCTAGCGAGACAGAAATGTCGACACCACTGCCATCTCCTCTCAGATGTTCAGATCAAACTGAACTAGCTAAGTACTACCGCAAGGCATAGCTAGTAGCCTAGactgacagacagactgcagGTTCAGGAGAGaccagtcaacaacaacaacaacatcgacCACAACAAGGGGCTAAAACGAGCAGGTGCTGGTCGACTGTTACCTCAGTTGGAAAatgtctcctcctcatcatcctcatcccTCCCTTTCTGAACTATGCATCATTGCAAAGAGAGGGCCAACTGTTACTGCCAGAAGGTGGTGAAATTATAGATATCGGTTTAGGTCAAAAGATGCACCTGATGTGCAAAGGACAAGGACAGCCAGTTGTCATACTGGATGCCCCCACTGGTATGTCCTCTGACATCTGGTTCCATGTACAAGAGAACATTGCACTGCTAACCAAGGTGTGCACTTATGACAGAGTGGGACTGGGGTTCAGTAAAAGAGTCCTGCAGAATGAAAGTACAGGGACGGAGAAAGTCTGGGGGATGTCAACCACTGGACGAATGGTGGACAACCTCCACCGCCTCATCGGTTTAGCTGGTCTAGCCACGCCTCTCATCCTGGTGGGGTCTGAACTGGGCACGCTCAACGCCAGGTTCTACAGCCATATCCATGACGCGCAGGTGTCAGACCTTGTCCTTATTGATCCCATTCCAGAGGACATCTTTGAGGAGGACCAGTGGCAGAAGTACTGGTACAGTCAGCTGGTGCCATCCCTCCAAGCTATGCAATTCTCAGCTGCCACAGGCATCAGCCGCATCCTCATCATTCTGGGGCTGCTAAAGCCAGCCATCATGGGGGACAACATCGCTGAAGACCTCATACAGAGACAGAAGTACCTCCTCAGTAACCCCGCCCACCAGAGCAGTGCTGTAGATGAACATTTTTTCCTGAATGAAAGTGCTTCTCAAGTCAGGGAAATCTCCAAATTCAAACCCCTCTCTAGTAGGACTTCTGTGAGTGTGATTATTGGGGATTCTTTTGATGAGCAAATTCCTGCTGCTCTAAACCAAATGGTGGCCCAGCTTCAGAAGACGTTACTGGAGCAGACTTACCCCTCAGCCAACCAGATCCATGTTAAAGGAGGGGACCGCAGGATGATCTACAAGAGGCCATCTGTTGTTAGCGAACACCTGTTGAAGCTGGTGTCCCAACGGCAGTCCAAACAGCAGAGCCAATGACCATAGAGATCTATAGAAGACATCTAGTTCTATTGCTCTAATTTCAAGGTTCAAATTCTGTGCCAGTGACACACTGATTCTGCTGATAAATGTCTCAACTACACTCACAACTGGAAGATGAAGTCATATGTCAGAGGTTCCATGTTTAGTTTTTTTCCAGTGATGATTTTTGACAGGAACACATGTCAAGTACAAATATTAGACAGTTTTGCCTTAATGtttgtaaataaataataaagtcTTCTGAATTTG

Function

NR:

description
uncharacterized protein LOC110485628 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036074.1 False 1587 mRNA 0.49 12 27651611 27677736
XM_021556734.2 False 1705 mRNA 0.46 11 27651611 27678014
XM_036944150.1 True 1490 mRNA 0.47 11 27651987 27678014

Neighbor

gene id symbol gene type direction distance location
LOC110485563 LOC106579093 coding upstream 232446 27409765 ~ 27419165 (+)
LOC110485528 LOC106605545 coding upstream 242622 27403665 ~ 27408989 (+)
LOC110485543 LOC106579099 coding upstream 248186 27390590 ~ 27403425 (+)
LOC110485507 LOC106579115 coding upstream 271202 27331697 ~ 27380409 (+)
LOC110485500 LOC106579140 coding upstream 320442 27321550 ~ 27331169 (+)
LOC110534576 dpys coding downstream 229775 27907789 ~ 27909986 (+)
LOC110485682 LOC106605395 coding downstream 487146 28165160 ~ 28171323 (+)
LOC110485672 LOC106605394 coding downstream 493832 28171846 ~ 28180205 (+)
ddr1 LOC106605397 coding downstream 516548 28194562 ~ 28250766 (+)
LOC110485735 LOC106605407 coding downstream 592237 28270251 ~ 28280280 (+)
G127824 NA non-coding upstream 82102 27519987 ~ 27569509 (+)
G127775 NA non-coding upstream 222590 27424051 ~ 27429021 (+)
G127767 NA non-coding upstream 262793 27388542 ~ 27388818 (+)
G127699 LOC106605528 non-coding upstream 339115 27310567 ~ 27312496 (+)
G127697 LOC106605528 non-coding upstream 341571 27308528 ~ 27310040 (+)
G128163 LOC106605482 non-coding downstream 4420 27682434 ~ 27682656 (+)
G128165 NA non-coding downstream 7574 27685588 ~ 27685805 (+)
G128175 NA non-coding downstream 22228 27700242 ~ 27700863 (+)
G128178 NA non-coding downstream 29139 27707153 ~ 27707361 (+)
G128191 NA non-coding downstream 48801 27726815 ~ 27727018 (+)
LOC110485466 LOC106605529 other upstream 348056 27288172 ~ 27303644 (+)
G127644 LOC106605534 other upstream 461018 27189991 ~ 27190593 (+)
LOC110485212 LOC106605536 other upstream 490966 27147880 ~ 27175747 (+)
G127198 LOC106605538 other upstream 790369 26857698 ~ 26861242 (+)
G127190 cf113 other upstream 855849 26794210 ~ 26795762 (+)
G128185 NA other downstream 38468 27716482 ~ 27717163 (+)
G128436 NA other downstream 410633 28088647 ~ 28089445 (+)
G128490 NA other downstream 572828 28250842 ~ 28547915 (+)
LOC110485990 LOC106579931 other downstream 1254042 28931988 ~ 28951235 (+)
G128853 LOC106605419 other downstream 1261885 28939899 ~ 28981288 (+)

Expression


Co-expression Network