LOC110485672 (LOC106605394)


Basic Information

Item Value
gene id LOC110485672
gene name LOC106605394
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28171846 ~ 28180205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556776.2
TTAGtcaaaaaaaaattctgcagtGCCGGATGGCGTCGGATGGTTAGTGTAGGAGTCGAGAAACTTCACGATAGTAAATAACGACGTTACTGTATTTCTGCCTTAGCTAACACAAACAAACTGTACTACGAAACTGTAATTTTTCATTCAAATATGCCTCGGAAAAAGCCGTTCAGCACCAAACAGAAGAAGAAACAGATGCAAGTGAAacgggaaagaaagagagGTGAGCCAGGCTCAGGGCCCAGCAGCCGTAATGCCAGTGTGGAGCGGGGGATGGACAGGGAGAGGCAGTCGGACACCTCAGATAGCGAAACCACAGATGTCAGGAGGATAAACCAGCAGCCCGGCATCAGGGAGGGCAGATACGACCCCAATAGgtTCCGTCTGCACTTTGagaaggagagcagagatgaggtggagaggaggaagaagctTGCTAGAGAGAAGGTTCTGGACCAGATGTTAGACAAAGACCTGGAGGTTGACATCAACGACATCTACCCCACAGAGAAAGGTCTTGAGTTTCCGCGGCGACCTCCGTGGAATTATGGGATGAATCGTGAGGAGCTGCTGAAGAAAGAAGAGAAGTCATACCGGGAATATCTGAACGACCTGCACTCCAGAAACCCACCAGGATCCCTCAGCCACTTTGAGCACAATCTGGAGacgTGGAGACAGTTGTGGAGAGTGTTGGAGATGTCCGATGTGATCCTGCTCATCGTGGACATCAGGCACCCGGTGCTGCAGTTTCCCCCAGCGCtgtaccactacatcactggggaGCTGCAGAagcaggtggtggtggtgctgaacAAAGCTGACCTGTGTCCCCCTCCGCTGGTGCTGGCCTGGACACACTACCTCCAGACACAGTTCCCCCACCTCCACTGTGTCTGCTTCACATCACACCCCGGCCAGCCATACAGCACAGTGCTtcagaagaagaggatgagaaaAAAGGGTACATGTGGGTGGGGACATGCTGGAGGCCCCACCCACATCCTGAAGGCGTGTCAGGAAATCACAGCAGGAAAAGTGGACTTGTCCAGCTGGGAGAAGAAGATCCAGAGAGATGCGGTTGCTATGGGATCAGAGGGAGAGCAGTCAGAGGAGGGGGCCGACTCTGTGCTAGTGGAGCACCAGAGTGATGTTGCCATGGAGATGAGCAGCCCCTCCCAGGAGCTGTATAAAGATGGCGTACTCACGCTGGGCTGTATAGgctTCCCTAACGTGGGGAAGTCATCAGTATTGAACAGTCTGGTAGGTAGGAAGGTGGTGAGTGTGTCTCGAACCCCCGGCCACACCAAATACTTCCAGACCTACTACCTCACACCCACGGTCAAACTGTGCGACTGCCCTGGACTGGTCTTCCCTTCACTAGTCAACAAACAACTACAGATCCTAGCTGGTATCTACCCAGTGTCTCAGCTGCAGGAGCCCTACAGTTCTGTGGGTTATCTGTGTGAGCGGACCCCCTTCCTGTCGGTGCTCAAGCTCCGGCACCCCAGCGTGGAGGGCCCACAGCATGCACccaagggaggggagaaggagagagagcagggacccGAGCACAGCTGGACAGCCTGGGACGTGTGTGAGGCCTGGGCAGAGAGGAGGGGTTATAAGACAGCGAAGGCAGCTCGTAACGACGTGTATCGGGCAGCTAACAGTCTGCTGCGGCTGGCCGTTGACGGGAGGCTGTGTCTGTGCCTCAGACCACCTGCATATAATGATCAGAGAGAGCAGTGGGAGTCCCACCCAGACCTGGCAGAGATCATCGCTCTACAGGGACGGAAGGaagaggggacaggggagagggaggaggaggaggagggggagtccagctctgagccggaggaggagagggatagggatgctgatgatgatggtgatgatgatgaagatgaaggGTTTGGACACCCAGCAGTGAACGAGAGGAAGGGGCCAACCAGCCTCACAGTCAATATGTTCGATGTCCTCCGGGAAAATGAGTGCGAGTGAGGGAGAAAGAATGAATTAAAAATACAAAGTGCTtgatctctccctccactctgcaCCTTCATTCTATTTTCCTTTCCTTGACTTGCATTCCTTTTACATTCTGACTCTTctttcctctattctctctccccgCCCCTTCCCCCTCCCAGAGGTTACTAAAAGCACTCTGatattgtataaaacattttcatTTCTCCATGCTGTGCCTCTGCTCTGCTTGTACACCCATGCAGCTGTACTTAGACTGCGTTTAGACaggtagcccaattctgatattttttccacagATTGTTCTTTTGACTAATCACATCCTATCTTTTCACATCCAATCTTTATCACAGCTGATTGGTCAAAAGGCCAATTAGTGAAggaaagatcagaattgggctgcctgtctaaaccaTTGTAGGATtacaatttttttgtttttgtcattTTCCTGCATGTAGGattttacttttatttccctTAAAGCTGGTAGGGGCATTGTGGTGTATTAATCATTGATTGGTTTTCAATCTGTTAATTGATAAGTGGCCTCACAGCTGAGATGCCAAAGGTCATTAGACCATAGAAATGTAATGGCTTGAACTGACACGGTTCTGGATTCAATCTCATGTTGAAGGTCACACAGTCTAAATGGGGATTAGACATTGATGATGTCATCCACATGGGACTTCCATTTGGGTGCCAGTGCAGATTTATGACATCACTGTCTAATCCTGGTTGATTTCACTGTGTACAACAGTATGATAGTACTTCTGTAGAGTCGGGATGTGTGGAATTCGGCATTCCATGCTGCTTTCAGTGGTAATAATCATTGTCAAACCCATTTATATGATTCTACCCAATTCAGTGTTCTATTTTAGGGTCCACTAGGGGCAGTGTTTGTCATTCCTGGTGCAGCCACTCACGTGCAGCACTGTATCATGcaaaactgactgactgacttgatAAAGAGAGAGTTTGGCCACTGCGGTTTCAACCAAAAAGCACTCTGATGGTATCACATGGTTCCATAGCAGCCAATATTGACCAATACAATAACGGTCCTGTTATTGATCCTAAATTATACCAGCTACGCAAACCAGCTGAGTAGCTAGAATTTAGAACGAGAGTCTAAATTCTGGAAGAATGGAACGACATTAATGTTGGTTAAACTTCCATCTCTATGGCTCTGTTCTAATGTTACAATCTGTTCGGGCTGGATTCTAGTGTGCTGTTGCCTACTGTTGTACCTCATTGttcctgttctactgtattacatGTCACTCTGAGGGAACACAACAGCACAGTGCTGCGTTACCATGTAACAACATGCACTGTTCTGGTCTATACCAATGGCACActgagaaatatacacactaggGCCATAGGTTTTTCCTGTCTGTGTGACTGATCCGGGCCGGTGTGTGTCTAAGCAACAACTAGGGACCCAGCAGAGGTTTTCCTACCCAcgtgaccaggaaaaactccttTCCCTAATACACACCTCTCTGGTTTCCGATATGGAGATAGATGTGTTAATGCTCTTTGTTTGAAATTTAAACAGACTTGTAAGTGAGTGTTTGgattgtgtattttctgcattctTTATTTCATTCCTTAGTATACTCAAATGACAATGAACTGGACTGCTCTCTGCAATAAAGATAATCCATGGAA
>XM_021556787.2
GTTGAGTAACTTGGCTAGTTAGCTCTGCTTTCAGGAACAATAACACTGGCATTTTACCCGATATATTTTGGACGAATTAGCTACAAATAAAGAATAGGGACGTCATTATTTTTGCCATAACGTGTGCCTTGTGTATTTGGGTCTTTCTAGCAAACGTTAACtaccttgcttgctagctaaggAGGTGACGACGTTATAGAGCTAGCTATGTGTGTGACCTTATCGCTGAAATTGTATTGCTGGCGTCATTCATTGCCATTGGTGGGAAAGTATTGATGCACAGAAATCAGCATCACTGTACTACACTGGTATTGTTTTCACTTTGTGTAAACTCTACTGCGCAGACTCGCTATCAAATTATGTAGGAAAGCTAGCTTTCTCAAATTGAGGGAATAACAAACGGTGTTGGAGATCACATACCTACACTACAGCTAGCAATGAAAATAGATTTATTATGAAAACGTCCACTGTCAATTTATTACGTAGGGTGAGCCAGGCTCAGGGCCCAGCAGCCGTAATGCCAGTGTGGAGCGGGGGATGGACAGGGAGAGGCAGTCGGACACCTCAGATAGCGAAACCACAGATGTCAGGAGGATAAACCAGCAGCCCGGCATCAGGGAGGGCAGATACGACCCCAATAGgtTCCGTCTGCACTTTGagaaggagagcagagatgaggtggagaggaggaagaagctTGCTAGAGAGAAGGTTCTGGACCAGATGTTAGACAAAGACCTGGAGGTTGACATCAACGACATCTACCCCACAGAGAAAGGTCTTGAGTTTCCGCGGCGACCTCCGTGGAATTATGGGATGAATCGTGAGGAGCTGCTGAAGAAAGAAGAGAAGTCATACCGGGAATATCTGAACGACCTGCACTCCAGAAACCCACCAGGATCCCTCAGCCACTTTGAGCACAATCTGGAGacgTGGAGACAGTTGTGGAGAGTGTTGGAGATGTCCGATGTGATCCTGCTCATCGTGGACATCAGGCACCCGGTGCTGCAGTTTCCCCCAGCGCtgtaccactacatcactggggaGCTGCAGAagcaggtggtggtggtgctgaacAAAGCTGACCTGTGTCCCCCTCCGCTGGTGCTGGCCTGGACACACTACCTCCAGACACAGTTCCCCCACCTCCACTGTGTCTGCTTCACATCACACCCCGGCCAGCCATACAGCACAGTGCTtcagaagaagaggatgagaaaAAAGGGTACATGTGGGTGGGGACATGCTGGAGGCCCCACCCACATCCTGAAGGCGTGTCAGGAAATCACAGCAGGAAAAGTGGACTTGTCCAGCTGGGAGAAGAAGATCCAGAGAGATGCGGTTGCTATGGGATCAGAGGGAGAGCAGTCAGAGGAGGGGGCCGACTCTGTGCTAGTGGAGCACCAGAGTGATGTTGCCATGGAGATGAGCAGCCCCTCCCAGGAGCTGTATAAAGATGGCGTACTCACGCTGGGCTGTATAGgctTCCCTAACGTGGGGAAGTCATCAGTATTGAACAGTCTGGTAGGTAGGAAGGTGGTGAGTGTGTCTCGAACCCCCGGCCACACCAAATACTTCCAGACCTACTACCTCACACCCACGGTCAAACTGTGCGACTGCCCTGGACTGGTCTTCCCTTCACTAGTCAACAAACAACTACAGATCCTAGCTGGTATCTACCCAGTGTCTCAGCTGCAGGAGCCCTACAGTTCTGTGGGTTATCTGTGTGAGCGGACCCCCTTCCTGTCGGTGCTCAAGCTCCGGCACCCCAGCGTGGAGGGCCCACAGCATGCACccaagggaggggagaaggagagagagcagggacccGAGCACAGCTGGACAGCCTGGGACGTGTGTGAGGCCTGGGCAGAGAGGAGGGGTTATAAGACAGCGAAGGCAGCTCGTAACGACGTGTATCGGGCAGCTAACAGTCTGCTGCGGCTGGCCGTTGACGGGAGGCTGTGTCTGTGCCTCAGACCACCTGCATATAATGATCAGAGAGAGCAGTGGGAGTCCCACCCAGACCTGGCAGAGATCATCGCTCTACAGGGACGGAAGGaagaggggacaggggagagggaggaggaggaggagggggagtccagctctgagccggaggaggagagggatagggatgctgatgatgatggtgatgatgatgaagatgaaggGTTTGGACACCCAGCAGTGAACGAGAGGAAGGGGCCAACCAGCCTCACAGTCAATATGTTCGATGTCCTCCGGGAAAATGAGTGCGAGTGAGGGAGAAAGAATGAATTAAAAATACAAAGTGCTtgatctctccctccactctgcaCCTTCATTCTATTTTCCTTTCCTTGACTTGCATTCCTTTTACATTCTGACTCTTctttcctctattctctctccccgCCCCTTCCCCCTCCCAGAGGTTACTAAAAGCACTCTGatattgtataaaacattttcatTTCTCCATGCTGTGCCTCTGCTCTGCTTGTACACCCATGCAGCTGTACTTAGACTGCGTTTAGACaggtagcccaattctgatattttttccacagATTGTTCTTTTGACTAATCACATCCTATCTTTTCACATCCAATCTTTATCACAGCTGATTGGTCAAAAGGCCAATTAGTGAAggaaagatcagaattgggctgcctgtctaaaccaTTGTAGGATtacaatttttttgtttttgtcattTTCCTGCATGTAGGattttacttttatttccctTAAAGCTGGTAGGGGCATTGTGGTGTATTAATCATTGATTGGTTTTCAATCTGTTAATTGATAAGTGGCCTCACAGCTGAGATGCCAAAGGTCATTAGACCATAGAAATGTAATGGCTTGAACTGACACGGTTCTGGATTCAATCTCATGTTGAAGGTCACACAGTCTAAATGGGGATTAGACATTGATGATGTCATCCACATGGGACTTCCATTTGGGTGCCAGTGCAGATTTATGACATCACTGTCTAATCCTGGTTGATTTCACTGTGTACAACAGTATGATAGTACTTCTGTAGAGTCGGGATGTGTGGAATTCGGCATTCCATGCTGCTTTCAGTGGTAATAATCATTGTCAAACCCATTTATATGATTCTACCCAATTCAGTGTTCTATTTTAGGGTCCACTAGGGGCAGTGTTTGTCATTCCTGGTGCAGCCACTCACGTGCAGCACTGTATCATGcaaaactgactgactgacttgatAAAGAGAGAGTTTGGCCACTGCGGTTTCAACCAAAAAGCACTCTGATGGTATCACATGGTTCCATAGCAGCCAATATTGACCAATACAATAACGGTCCTGTTATTGATCCTAAATTATACCAGCTACGCAAACCAGCTGAGTAGCTAGAATTTAGAACGAGAGTCTAAATTCTGGAAGAATGGAACGACATTAATGTTGGTTAAACTTCCATCTCTATGGCTCTGTTCTAATGTTACAATCTGTTCGGGCTGGATTCTAGTGTGCTGTTGCCTACTGTTGTACCTCATTGttcctgttctactgtattacatGTCACTCTGAGGGAACACAACAGCACAGTGCTGCGTTACCATGTAACAACATGCACTGTTCTGGTCTATACCAATGGCACActgagaaatatacacactaggGCCATAGGTTTTTCCTGTCTGTGTGACTGATCCGGGCCGGTGTGTGTCTAAGCAACAACTAGGGACCCAGCAGAGGTTTTCCTACCCAcgtgaccaggaaaaactccttTCCCTAATACACACCTCTCTGGTTTCCGATATGGAGATAGATGTGTTAATGCTCTTTGTTTGAAATTTAAACAGACTTGTAAGTGAGTGTTTGgattgtgtattttctgcattctTTATTTCATTCCTTAGTATACTCAAATGACAATGAACTGGACTGCTCTCTGCAATAAAGATAATCCATGGAA

Function

NR:

description
guanine nucleotide-binding protein-like 1 isoform X1

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556776.2 False 3669 mRNA 0.48 12 28171846 28180205
XM_021556787.2 True 3930 mRNA 0.48 12 28172165 28180205

Neighbor

gene id symbol gene type direction distance location
LOC110485682 LOC106605395 coding upstream 523 28165160 ~ 28171323 (+)
LOC110534576 dpys coding upstream 261860 27907789 ~ 27909986 (+)
LOC110485628 LOC106605483 coding upstream 493832 27651611 ~ 27678014 (+)
LOC110485563 LOC106579093 coding upstream 752681 27409765 ~ 27419165 (+)
LOC110485528 LOC106605545 coding upstream 762857 27403665 ~ 27408989 (+)
ddr1 LOC106605397 coding downstream 14357 28194562 ~ 28250766 (+)
LOC110485735 LOC106605407 coding downstream 90046 28270251 ~ 28280280 (+)
LOC110485723 LOC106605400 coding downstream 100907 28281112 ~ 28296740 (+)
si:dkeyp-77h1.4 LOC106579702 coding downstream 116997 28297202 ~ 28318817 (+)
ino80e ino80e coding downstream 151528 28331733 ~ 28334614 (+)
G128459 NA non-coding upstream 30941 28140278 ~ 28140905 (+)
G128438 NA non-coding upstream 78848 28092418 ~ 28092998 (+)
G128431 LOC106605392 non-coding upstream 87066 28084168 ~ 28084780 (+)
G128423 NA non-coding upstream 97239 28073761 ~ 28074607 (+)
G128474 NA non-coding downstream 477 28180682 ~ 28181001 (+)
G128531 NA non-coding downstream 83989 28264194 ~ 28265454 (+)
G128546 NA non-coding downstream 124279 28304484 ~ 28304997 (+)
G128549 NA non-coding downstream 131621 28311826 ~ 28382924 (+)
G128436 NA other upstream 82401 28088647 ~ 28089445 (+)
G128185 NA other upstream 454683 27716482 ~ 27717163 (+)
LOC110485466 LOC106605529 other upstream 868291 27288172 ~ 27303644 (+)
G127644 LOC106605534 other upstream 981253 27189991 ~ 27190593 (+)
LOC110485212 LOC106605536 other upstream 1011201 27147880 ~ 27175747 (+)
G128490 NA other downstream 70637 28250842 ~ 28547915 (+)
LOC110485990 LOC106579931 other downstream 751851 28931988 ~ 28951235 (+)
G128853 LOC106605419 other downstream 759694 28939899 ~ 28981288 (+)
LOC110534631 LOC106580029 other downstream 1297412 29424822 ~ 29478401 (+)
G129155 NA other downstream 1304428 29484633 ~ 29485130 (+)

Expression


Co-expression Network