Item | Value |
---|---|
gene id | ddr1 |
gene name | LOC106605397 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048566.1 |
NCBI id | CM023220.2 |
chromosome length | 103806877 |
location | 28194562 ~ 28250766 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
PREDICTED: epithelial discoidin domain-containing receptor 1-like, partial |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036944288.1 | False | 3431 | mRNA | 0.58 | 21 | 28194562 | 28247967 |
XM_036944289.1 | False | 3419 | mRNA | 0.58 | 20 | 28194562 | 28247967 |
XM_036944293.1 | False | 3326 | mRNA | 0.58 | 20 | 28194562 | 28247967 |
XM_036944287.1 | False | 6271 | mRNA | 0.51 | 21 | 28194563 | 28250766 |
TU148195 | True | 3167 | lncRNA | 0.44 | 2 | 28247437 | 28250761 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110485672 | LOC106605394 | coding | upstream | 14357 | 28171846 ~ 28180205 (+) |
LOC110485682 | LOC106605395 | coding | upstream | 23239 | 28165160 ~ 28171323 (+) |
LOC110534576 | dpys | coding | upstream | 284576 | 27907789 ~ 27909986 (+) |
LOC110485628 | LOC106605483 | coding | upstream | 516548 | 27651611 ~ 27678014 (+) |
LOC110485563 | LOC106579093 | coding | upstream | 775397 | 27409765 ~ 27419165 (+) |
LOC110485735 | LOC106605407 | coding | downstream | 19485 | 28270251 ~ 28280280 (+) |
LOC110485723 | LOC106605400 | coding | downstream | 30346 | 28281112 ~ 28296740 (+) |
si:dkeyp-77h1.4 | LOC106579702 | coding | downstream | 46436 | 28297202 ~ 28318817 (+) |
ino80e | ino80e | coding | downstream | 80967 | 28331733 ~ 28334614 (+) |
LOC110485753 | LOC106605405 | coding | downstream | 84744 | 28335510 ~ 28338650 (+) |
G128474 | NA | non-coding | upstream | 13561 | 28180682 ~ 28181001 (+) |
G128459 | NA | non-coding | upstream | 53657 | 28140278 ~ 28140905 (+) |
G128438 | NA | non-coding | upstream | 101564 | 28092418 ~ 28092998 (+) |
G128431 | LOC106605392 | non-coding | upstream | 109782 | 28084168 ~ 28084780 (+) |
G128531 | NA | non-coding | downstream | 13428 | 28264194 ~ 28265454 (+) |
G128546 | NA | non-coding | downstream | 53718 | 28304484 ~ 28304997 (+) |
G128549 | NA | non-coding | downstream | 61060 | 28311826 ~ 28382924 (+) |
G128561 | NA | non-coding | downstream | 129016 | 28379782 ~ 28380102 (+) |
G128679 | NA | non-coding | downstream | 317550 | 28568316 ~ 28600609 (+) |
G128436 | NA | other | upstream | 105117 | 28088647 ~ 28089445 (+) |
G128185 | NA | other | upstream | 477399 | 27716482 ~ 27717163 (+) |
LOC110485466 | LOC106605529 | other | upstream | 891007 | 27288172 ~ 27303644 (+) |
G127644 | LOC106605534 | other | upstream | 1003969 | 27189991 ~ 27190593 (+) |
LOC110485212 | LOC106605536 | other | upstream | 1033917 | 27147880 ~ 27175747 (+) |
G128490 | NA | other | downstream | 76 | 28250842 ~ 28547915 (+) |
LOC110485990 | LOC106579931 | other | downstream | 681290 | 28931988 ~ 28951235 (+) |
G128853 | LOC106605419 | other | downstream | 689133 | 28939899 ~ 28981288 (+) |
LOC110534631 | LOC106580029 | other | downstream | 1226851 | 29424822 ~ 29478401 (+) |
G129155 | NA | other | downstream | 1233867 | 29484633 ~ 29485130 (+) |