LOC110485712 (LOC106605398)


Basic Information

Item Value
gene id LOC110485712
gene name LOC106605398
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28252625 ~ 28265466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556854.2
GGTCAGCATTTGCTCACCATTAAGTCACGTTAAGTAACATTTTGTTGCAATTCCAGTATTTGAGCCAGTCGTCAAGTCACGTAAATCGGAGTATATTGAAACCCTCTTGAGTGTACACGACGATTTATGAAAACATATCTTTAGGGAGAATCGATTGGTCCAAATCAAGATGTTCCACACATGTGGACCCAATGAAGCCATGGTGGTGTCTGGCTTTGGTCGTTCCCCTCCTCTAATGATCGCTGGAGGAAGAGTGTTTGTCCTCCCCTGTATTCAACAGATCCAGAGGATCACTCTGAACACCCTGACTCTGAATGTGAAGAGTGATAAGGTGTACACCCGTCATGGAGTGCCCATCTCTGTCACGGGCATCGCCCAGGTGAAGATCCAGGGTCAGAACAAGGAGATGCTGGCCACGGCCTGTCAGATGTTCATGGGAAAGTCTGAGGCTGAGGTCTCCAACATCGCCCTGGAAACACTGGAGGGGCACCAGAGGGCCATCATCGCCCATCTGACTGTTGAGGAGATCTACCAGGACCGTAAGAAGTTTTCTGAGCAGGTGTTCAAGGTGGCCTCCTCTGACCTGGTCAACATGGGCATCGGCGTGGTCAGCTACACGCTCAAAGACGTTCACGACGACCAGGATTACCTCAACTCCCTGGGTAAAGCTAGGACAGCTCAGGTGCAGAAAGATGCCAGGATCGGAGAGGCTCAGTACAAACGAGACGCGGTGATCCGTGAGGCCCAGGCCATGCAGGAGAAGGTGTCGGCCCAGTATCTGAATGAGATTGAGATGGCCAAAGCCCAGAGAGACTACGAGCTGAAGAAGGCCTCCTACGACTACGAGGTCAACACCAAGAAGGCAGAGTCTGAGATGGCCTATCAGCTGCAGGTGGCGAAGACGAAGCAGCGGATTGAGGAGGAGACGATGCAGGTGAAGGTGGTGGAGAGGTCTCAGCAGATCATGCTGCAGGAGCAGGAGATCACCCGCAAGGAGATGGAGCTGGAGGCCACGGTGAAGAAGCCTGCTGAGGCAGAGAGATACCGTCTGGAGAGACTGGCTGAGGCGGAACGTGCACAGCTCATCATGGAAGCTGAGGCAGAGGCAGAGTCCATCAGAATGAGGGGCGATGCTGAGGCGTTTGCTCTGGAGGCTAAGGGTCGTGCCGAGGCAGAGCAGATGGCTAAGAAGGCTGAGGCCTTTAAACAGTACGGGGAGGGAGCCATGGTGGACATGCTGCTGGAGAAACTACCACTGATAGCAGAGGAGATCAGCAGGCCCCTCTCCAAGGCCCAGAAGGTTACCATGGTTTCCAGCGGCGGCGGTGAGGTGGGCGCTGCCAAGCTGACCGGAGAGGTTCTGGACATCATGACCAGACTACCAGCTGCTGTGGAGAAACTCACTGGAATCAACATCTCACAGGTTGGCCTGTCCACCCGAATGGGCTGAGAATGGAGCCCAGTGACTGAGACAGCCTGCACCGTCAGACCAGGAACTCCATACTGCCTCCTTGTGCCTATAATTACTATTACCTAGTGTAGTTGTCTGTCTATGTCTGCATGCCTGTCTGCATGCCTGTGTTAGCACGGTAGTCTTTCTTAGAGCATGTGTCATTGGCACTCATTGGCACTGATCTGGAAACAAAGGATGGGTCAAAGCTGTATGTTGTTGGCCTACTGTGGGAGTTTGTGTCTCCTGGTCATTCATATCCCTGTTAGATCAGCTTGGATGAAGGAAAGGAAAGCACTTTGGGCTAGCATGACACAGCCTTAGTAGTTCTGGTAGCAACGAGCCTCTTTTCCCCATCCGTTattcagtgtgttttaatcacTGCTTCAAGCCtgcctttctgtctccctctattACAGGTCTGGGTCCATATAAACTGTTCCACTGTCACATAGTTGTGTTTTAGTTGTAATTCATAGAGTATTATTTCATTGGGATGTGGTTGAGAAAGGATGTTTTCATTCTCTTCATTCTTTGTTGTTGATAGGAAATAATCGTGTCAGTATGAGGTTTGTCAGTTgattgttttgtcgacatttgcaGTTATTCTATAAGGTAGTCTGTCTTGTTCTGAGCATGGTTGGCTAGCTAGTTGCTATCAATTGCTTTGCAAATGAAGAAGAAATGCTCTTTACTTTCACTGTGGACATTTCTTCATTTATTTTTTAGCTAATTGTAGTCCTGGTAGTCATGTTATTAAACATGTTCTACCTGCTTATGGATTCTAGTACCTCTTGTCTACCAATTTATGGACAAAGTGGTTTCCCATTATGTGCTCCCCTGACAGTAGATCCTAGATCAGTCTACTGATATCTCTAGCCCTCTAGAATGGCCAGTGCCTTGTGTTTTAAAGTCTTAATTAATCATATCAATACAAGCCATATTACAGTAGAAGCCAAGTTGCATGCAGATAATGCTGATTTGTGATCTTTTTGCCATGACCCTGCCATATGTGTGGGATGAAATCACAAACTATATGATGGGTTGGCACTAAACCTCTTCTCTCTGTTGGTACAATACTGGCATAGACACAATCACTGGAGTACTGAATTTGATGGTACCTAATCTAATTTTCCATAGCAAAAGAAAAACAAGGAACTACAGATTCTCTGTTACTAAAGTGTTGTTTATCCAACAGACAGGTTGTCATGTACACCATTATGGCTTAGTTCCAGTGTGTTTCTAAACCCTAGACTTATTAGACAGACAGGCCTTCGATCAGAGCTTCTACTGTGCTACAACTGTATAAAGGTGGAGATTTTCTGTGAAGTGattggaaggaaggaaggaaggaagtgggtgggaggagggagggagcggaCTGGGGTTTTCCTGCTGAAGACTAACCTCCGAGGTCTCTTTATCTAGGTCAGGTGTACTGTCAGTCACGTGGTGTCTGGTGGAtgtgctgtttgaggtgaagttATGTGTGTGGGAATGGGGAaactagcctgggtgccagtctgtttctgctctcttgtcAACTCCTTATCGAATTGTCAAGCCAAACACGTTTCCCTTAATGTCAATGGAACAGGCAAAAGCACAaccagacctgggaccaggctacagacacTACTATAGTGGAGTTCCATGTATGGTCCAGTGGGGTAGACAGGCACCTTCTGTAGACTGGAGTAGACCATATACATTTTAATCAGATGTGTTGATTAATCAGGAGCTATCCTTTTGTATTGTAATCTTATCATTAGACTGGTCTTATTTTTCCAGATTTTCTATGTGGTGCTGATCACATCCCTGTTTGATCCTTTTTGTAGTATAAGGTTTGTTAGGGACTGGTTCtataccatagaaatataatccttCTGTGTTCTATACCACCACTCAGGATTCTAGAAGCTACTACTCTCTAGCTGATTGTAATTTCCCAAAGCTTACATGCTCTCTGGCTGTCTATGCATTTTGTTACCGTCAAGTGCCTGACTAAGTTGAAAGATTCCCATTTTTCTCTCAACCTAAAGGCTAAA

Function

NR:

description
flotillin-1-like

GO: NA

KEGG:

id description
K07192 FLOT; flotillin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556854.2 True 3498 mRNA 0.47 12 28252625 28265466

Neighbor

gene id symbol gene type direction distance location
LOC110485705 LOC106605396 coding downstream 87770 28152489 ~ 28164855 (-)
LOC110485663 LOC106579570 coding downstream 102650 27933389 ~ 28149986 (-)
LOC110534585 LOC106605382 coding downstream 322809 27927664 ~ 27931710 (-)
LOC110485644 LOC106579058 coding downstream 427512 27678308 ~ 27825113 (-)
LOC110485571 oxr1 coding downstream 619515 27419646 ~ 27633110 (-)
LOC110485793 LOC106605408 coding upstream 52579 28318045 ~ 28329196 (-)
LOC110485762 LOC106605404 coding upstream 90933 28356399 ~ 28373544 (-)
g6f-like-a g6f-like-a coding upstream 112352 28377818 ~ 28401529 (-)
LOC110485830 LOC106605406 coding upstream 204243 28468401 ~ 28471494 (-)
LOC110534614 LOC106605399 coding upstream 210357 28475823 ~ 28533709 (-)
G129547 NA non-coding downstream 20227 28230607 ~ 28232398 (-)
G129507 NA non-coding downstream 61082 28191336 ~ 28191543 (-)
G129459 LOC106605395 non-coding downstream 81308 28170013 ~ 28171317 (-)
G129464 znf384l non-coding downstream 84231 28167944 ~ 28168394 (-)
G129471 NA non-coding downstream 159267 28093153 ~ 28093358 (-)
G129572 LOC106605400 non-coding upstream 25065 28290531 ~ 28291251 (-)
G129582 NA non-coding upstream 44853 28310319 ~ 28310732 (-)
G129588 ino80e non-coding upstream 66229 28331695 ~ 28334476 (-)
G129631 LOC106605406 non-coding upstream 170500 28435966 ~ 28450726 (-)
G129250 NA other downstream 486093 27766157 ~ 27766532 (-)
LOC110485245 ubr5 other downstream 974501 27231538 ~ 27278158 (-)
LOC110539285 LOC106579350 other downstream 1589611 26641958 ~ 26675649 (-)
G127083 NA other downstream 1690498 26561614 ~ 26562127 (-)
LOC110486376 LOC106605451 other upstream 1603580 29859575 ~ 29878744 (-)
c2h8orf37 cssa05h8orf37 other upstream 2624227 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 2631560 30897026 ~ 30899564 (-)

Expression


Co-expression Network