LOC110485735 (LOC106605407)


Basic Information

Item Value
gene id LOC110485735
gene name LOC106605407
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28270251 ~ 28280280 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556890.2
ATCATTGTTTGTGCTGATGGCCAAAACCATTGTCCACACTAGTTCGGTTGGGTCTTCATGGTtcactgtctctttgtgtctcaaAATTTCTCCCAGTCAAGATGAGGGAAATCGTGCATATCCAAGCCGGCCAGTGCGGTAACCAGATTGGCGCCAAGTTCTGGGAGGTGATCAGCGATGAGCACGGGATTGACCCCACAGGCACCTACCATGGAGATGGCGACCTGCAGTTGGACAGAATCAGTGTCTACTACAATGAGGCAACAGGTGGTAAATATGTGCCCAGGGCCATCCTCGTGGACCTTGAGCCTGGCACAATGGATTCTGTGAGGTCTGGACCCTTTGGACAGATCTTCAGGCCAGACAACTTTGTGTTTGGCCAGAGCGGTGCTGGTAACAACTGGGCAAAGGGCCACTACACAGAGGGAGCAGAGCTGGTGGACTCTGTCCTGGACGTAGTGAGGAAGGAGTCAGAAAACTGTGACTGCCTGCAGGGTTTCCAGCTCACCCACTCCCTGGGTGGAGGCACGGGGTCGGGTATGGGCACCCTGCTCATCAGCAAGATCAGAGAGGAGTACCCTGACCGCATCATGAACACCTTCAGCGTGGTGCCCTCACCAAAAGTATCAGACACAGTGGTGGAGCCCTACAACGCCACCCTCTCCGTTCACCAGCTTGTGGAGAACACAGATGAGACGTTCTGCATCGACAACGAGGCCCTTTATGACATCTGCTTCCGCACGCTCAAACTGACCACGCCCACCTACGGTGACCTCAACCACCTGGTGTCAGCCACCATGAGCGGCGTCACCACCTGCCTGCGCTTCCCTGGCCAGCTCAACGCTGACCTTCGCAAACTGGCCGTCAACATGGTGCCCTTCCCCCGTCTGCACTTCTTCATGCCTGGCTTCGCCCCCCTCACCAGCAGGGGCAGCCAGCAGTACCGTGCCCTCACCGTGCCCGAGCTTACCCAGCAGGTGTTCGATGCAAAAAACATGATGGCAGCTTGCGACCCTCGTCACGGCCGCTACCTTACTGTGGCCGCAGTGTTCCGGGGCCAAATGTCCATGAAGGAGGTGGACGAGCAGATGCTTAATATCCAGAACAAGAACAGCAGCTACTTCGTGGAATGGATCCCCAACAATGTGAAGACCGCTGTCTGCGACATCCCACCCCGGGGTCTAAAGATGTCTGTCACCTTCATCGGCAACAGCACAGCCATCCAGGAGCTGTTCAAGCGTATCTCTGAGCAGTTCACTGCCATGTTCCGCCGCAAGGCCTTCTTGCACTGGTACACTGGAGAGGGCATGGATGAGATGGAGTTCACTGAGGCAGAGAGCAACATGAACGACCTGGTGTCTGAGTACCAGCAGTACCAGGACGCCACCGCTGAGGAAGAGGGAGAGTTCGAGGAGGAGGCTGAAGACGATGACGCTTAAAGACAGAGCTTTGGAGATGAAGATTCTATTCAAAGGGCCAAATGAAGCTGTGAAACCACATGGGAAAAGTAACTTAGAAGCAAGAAAAAGTTAAAGGGGACCTAAAACCAATGttgagcttttttttttttatctaatgGGAAATATTATAGTAATGTAGACACACCCCTTGTGACTGCGAATAAATTAGTTAATGTTCA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07375 TUBB; tubulin beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556890.2 True 1639 mRNA 0.53 5 28270251 28280280

Neighbor

gene id symbol gene type direction distance location
ddr1 LOC106605397 coding upstream 19485 28194562 ~ 28250766 (+)
LOC110485672 LOC106605394 coding upstream 90046 28171846 ~ 28180205 (+)
LOC110485682 LOC106605395 coding upstream 98928 28165160 ~ 28171323 (+)
LOC110534576 dpys coding upstream 360265 27907789 ~ 27909986 (+)
LOC110485628 LOC106605483 coding upstream 592237 27651611 ~ 27678014 (+)
LOC110485723 LOC106605400 coding downstream 832 28281112 ~ 28296740 (+)
si:dkeyp-77h1.4 LOC106579702 coding downstream 16922 28297202 ~ 28318817 (+)
ino80e ino80e coding downstream 51453 28331733 ~ 28334614 (+)
LOC110485753 LOC106605405 coding downstream 55230 28335510 ~ 28338650 (+)
vars1 LOC106605401 coding downstream 58559 28338839 ~ 28356242 (+)
G128531 NA non-coding upstream 4797 28264194 ~ 28265454 (+)
G128474 NA non-coding upstream 89250 28180682 ~ 28181001 (+)
G128459 NA non-coding upstream 129346 28140278 ~ 28140905 (+)
G128546 NA non-coding downstream 24204 28304484 ~ 28304997 (+)
G128549 NA non-coding downstream 31546 28311826 ~ 28382924 (+)
G128561 NA non-coding downstream 99502 28379782 ~ 28380102 (+)
G128679 NA non-coding downstream 288036 28568316 ~ 28600609 (+)
G128652 NA non-coding downstream 319007 28599287 ~ 28644026 (+)
G128436 NA other upstream 180806 28088647 ~ 28089445 (+)
G128185 NA other upstream 553088 27716482 ~ 27717163 (+)
LOC110485466 LOC106605529 other upstream 966696 27288172 ~ 27303644 (+)
G127644 LOC106605534 other upstream 1079658 27189991 ~ 27190593 (+)
LOC110485212 LOC106605536 other upstream 1109606 27147880 ~ 27175747 (+)
LOC110485990 LOC106579931 other downstream 651776 28931988 ~ 28951235 (+)
G128853 LOC106605419 other downstream 659619 28939899 ~ 28981288 (+)
LOC110534631 LOC106580029 other downstream 1197337 29424822 ~ 29478401 (+)
G129155 NA other downstream 1204353 29484633 ~ 29485130 (+)
G130308 NA other downstream 1319746 29600026 ~ 29641096 (+)

Expression


Co-expression Network