LOC110485723 (LOC106605400)


Basic Information

Item Value
gene id LOC110485723
gene name LOC106605400
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28281112 ~ 28296740 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933644.1
CTTTTACCCAATCATCACAAATTAGACCATAACTGACAGCCGTTTCGATCAATAATATTATGGTCCCACCCACCGAAGGCGGTCAGATATTCTACCGGAAATGCACATTGTTTTTCGTTGTTCGAAAGGCATGCACGATTGAAGGGTGAATGGAGGCAACACAGCTGATCGATGACTCAATATTGGAAgagtcagaggaggaggaggatggagagaagcgAGGAGAGCCACTGGCCAAACTCAGGgtgttaaaaaataaacacatcaCAGAGACTGagtTGCCTCTCTACCAGGGAGAAAATGTGTTGGGTCGAAACCCAGACTCCTGCTCCCTGCCCCTTGTGGCCCGCTCCGTATCCAAGCAACACACCATCATCTCCATCTCAATGTTTCGCGGCAACCGTCGTCATGGCAACGTTGCCGCCATGGAGACAGAGGCTTTAGTGTGGGACCTGGGCAGCATGAACGGGACAAGGAAGGGCCGGACCAAACTGACCCCTCACGTCCGCTACGCTCTGACCGAGGGAGAGTGTGTGGTAATAGCTGACATCCCCTGCCAGTATGTCTCTGTGGACCAGAGGGGGGGACAGGGGCACATGCAGAACCCGACAAACGCACACTCTGGAAGGAGGTCAGGGCCAGACAGGAAGGCCCAGCTCAGAGGAAGCCCTAGCGGCCAAGGTCTGGGACGAGAGACTGGCACACCGAAGACTGAGGGTAGAGGAGTTAATGGAGAGATTGGGGCACCATCGTTGACTGAGCTGGGTGGAAAGGGTAAAAATCTGGCCAAACCCCTGTCATTTGAACAAACCCCCACACAGCCTGAGAGGACACTGGTGCCTGAGTCTGACTCCGATGGAGAGCAAGAGGGACGGAGAGACAAACGGGGAAAGTACTTTGtCTCTGATTCTGACTCGCACATGTCCAGTCCCACCTGTTCTACATTCCTCAGTCCTACAACCAACGTCATTCCAGAGAGTGAGGACGAGAGCCCCatcactccctcctcctctgctATAAACAGACCCAAGACAATAGTGAGCTTCAGTGAGGAGGAGAGCGACATGGATGGACCGAGACAGCAGCCCAGGAGAAGAAGAGCTCAAGTGATAGTGGACGACagcgaagaagaggaggaggggaaggaaggcaCAGAGGCACTAGGAGAGAAGGAACCTGGGAAAAGGACAAGAGGAAAGGAGGAAGTGTCAGTGGTGAACCAGGTCAGTCAAGCTGAGAGAGATGGACCAATGGTGTCTACAGAGGACACATTTAACATGGACAGTGACACAgacgtagagggagaggaggagatggggctgTCTGCACCTGTAAACGCTGTTAAGCCACCAGCCGCAACAGAACCTCCTACTACAGACTCTGACCCAGGCCAGATCCACATGGACAGTGATACTGATGTAGAGGAAGGGGATACTATGGACAGTGACTCTAAGTTAATGCTAACTGCTGCCGATGTGGAGAGGAAACCAGTAGATTCTGTCCCAGTGGTGCAGCCAACAGAGATACACCTGGACAGTGATACAGAtgtggatgatgatgatgatgttgttgtgtcAGACAGTGCTACCAATGTTACCTCCTTCGTATCCGATCCGGCTGAGAAACCAGACAATCCTGCCCCTGCAGTGCCACCCGTAGAATTCCACCTTGACACTGACACAGATGTGGAAGaggaggacacagacacacattccaAAACAGTTCCAGAATCAGATTCTAGTGGGATCAGAACAGGGATTGCTGGTCCCCAGGAGATCCTTTTGGACAGTGATACTGATGAAGAAGACAACCCGTTTACCCCTCCGGCCAGCAGTAGAACAGCGGAGCTCCTTAATCCACCCACCAGTGTAAGACCTGCAGCTGCTGCTCCTCTGGAGGTCAGGTCTGACAGCGACACAGACTTAGAGGAAGACGCCACACAGACCATGAACCTTCCTCCTCCTAATGTCACCACGGTAACGGAGGATGCGGTGTTCGCGTCGCGACAGGCCGTGCTTCCATCAcccacaataacaacaacaaccggTGCTGTTACCAAGACAATCGCTCTCAGGTCTCAGGACTCTGATGCTGACACAGATGCTGAGGAGGAGAGGTTGGAGCCCAAACCCCCCCGGTGTCGGCCCCCAGCAGGGATGGTCCCGGAGTCGGACCTCAATGAGCCCAGTGACTTCAGGATGGACAGTGATACGGAGAAGGATGGACCAGGGGAGGCAGGCCAGGGACAGACTGCATGTCGGCTCAGAGAGGGGGCAGCTGGCCCTGGGCTGCTCCCCCTGGGGGGTTCCCCTGGCCCTCATCAGAAGTGCTCCACCCCTTTGGCATCGTCAgtacaggaggagatggagactCAGGCCTTCTTCTGTCCCTCTGACCCCTTCAGACGCCCTGCTCTCCCTCCTGTGCTGAGGCCTACAGCAGCATTGTCCTGCTCTGCATCAGACAGCCAGGAGGACGATGACTTTGTGGTGGCCGAGACCCAGTCATTTGTGTTGGAGGCCCAGAACCAGGGCCATCAGAGCAGCCTTCCAGTGGAACCAACTCTGGATGCTACACAGCCCTATGGTTTGGAGCCTTCCTTGGGGGAGGAGCAGCCCAGCCGAGGCTCCTTCCAGCTGGGTCTGTCAGACAGCAGCCACCTCCACCTCCAGGCCAGGGACCAGGCCTCAGAGAGCACCCAGGCATTCAGCTTCCCAGGTGGGGATTCTGACCTGGAGGCCACCCAGACCTATGGATCTggagggaggagcgaggagcCTTGCCTTGGCCAGAGGTCTGCGGTGTTCAGGAGGAACAGGCAGGGGGATTCTGACCTGGAGGCCACACAGACCTATGGATCTAGAGGGGGGAGCGAGGAGCCTGGCCTGGGCCAGAGGTCTGCGGTGTTTGAGAGGAACAGGCAGGTGGACTTTGCCCTGGAGGCAACACAGGCTTATGCTGCCCAGCCTCGCAGTGACacagaggaggaagatgaagaggagacCCCCACCACGTCTAATGTTGCTACAACTGAAACCCTGCCCATGTCTGCCTATGAGGAAGAGgacagtgaggaggaggaagatttGGTTGGGGCCAAGCCCCTGACCCCAGTAAGGAGAGGGAGATCtggaggagcgagggagagagaggaagaggagcaggagaCCCAGACTGGTGAGGTGCTGACCAACCAATACCTCTCCACAGCTCAAACTCTGGACATGGTCCAGGAGAGTGATGATGAGGAAGAAGCCAAACCAGACTCGCCCAGAAGAAGACGGACCCAAAAACAGACAGTAGacgaggaagagagacagactgtcagCTCCTACCTCTCCACTGCTGAAACCCAGCCCATgtttactgctgctgctgctgaggatgatgatgataatgaggaGGAAGAACTCAAACCTCCATCACCCAGAAGGAGGGGAAGGTCCCAGAGAGGCagagtagaagaggaggagacacaaCCTAGTGAGTTCCTCACCAGCTCCCACATCTCCACCGCTGAAACTCAGCCTATGGGTACTTGTGacactgaggaagaggaggaggaggacaccaAAGCTAAAGGACAGgctcagagagagcgagggaaagagtcGGAGGCTGGGACAAGCGGTGtcagcagtagaggtagaagaggagctagaggaggagaggaggagagctctGAGACTCTGAAAACGCAGATGAGAGGAAAGGGGAAGGCTGTGAACACCGCGGGAggcggagggaggagagaggtgttgcctgaggaggaagagagtgagaaagaagaAGAGGCGGAGGTGGTTGAGCAAGGGAGGAGGGGAATAGGAAGAAAGAGTGTGAAAcaacagaaagagggagaaaaagaaagacttgaggaggaacggagagaggaggaagagggaataGAGAAGGAAAGACAAGAACAGGCTGAGAAGGAACGGTTGCAGAAGGAAAAAGTAGAATCAGAAAGGGTTATGAAGGaacaacaggacagagagaggatggaacaGGAACTTAAAGAACAAGATGAGAGATTAGAGAGTgtggaaagagaagaaacagaaaggatggagagggagaaaagagaacaagagaaaagagaagaaacagaaagGATGGAGAAAAGAGAACAGgagaaaagagaagaaacagaaaggatggagagggagaaaagagaacaggagaaaagagaagaaacaaaaagagaagaaacagaaaggatggagagggagaaaagagaagaaacagaaaggatggagagagagaaaagagaacagGAGAAAAGAGAGCAGCTTGAGAGGGAAAGGAAGGAACGAGAAGAGCAAGAAAGACTGCAGTGCGAGAGGACAAAAAGAGAAAAGAAGGAGAGATTAGAGGAAGAAAAAGAAAGAATAGAGCGGGAGAGGAAAGAAATAGAAGAGAGGAacagactggagagggaggaaaaaGAGAAGCAAGAACGATTGGAGAGAGAAAACAGGGAAAGGGAAGCGCTTGAGCgatcagagagagaaagggtggagaaagagaggatagagggagaacaAGCAGAAAAGCAAAGATTGGAGAAAGAAAAAATggaaagggaagagaagagaaaacaggagagagaactattgaagaagaaaaaggaagaggagagaaaccTGAAAGAAAaactggagagggagaagaaggaaagagaaaagagggaagcagaggagaaagaaaaggagatAAAAGAACGACAGGCGAAGGAACAAGGAGAAAAACAAGCCAAGAAAGACGACGAAAATGAGCTAAAAACATCCAGGAGAGGTCGCAGAGCAGCAACCAGGAGAACCGTCACGGTTCCACCCACAACGGAACCACAACCTGAACTTAATATTCTGTCCAGCACACCAGAACCAGTCCCAGCTAGTATAACTAGGTCTCGCTCCAACTCTTCCAACTCTGTCAGCTCTGAGAGATCCAGCATAGACACCCtggggagcagagggagagggggcaggaAGACCACCAGCACCACAGAGCCAGCCCCGGATCCAGACAACCCCACCCGCAACAGCACCAGGAAAAGGACGTTGGTCGGGACGGTTGTGGCTCCCCCTGCTGCTGTGGAGGTCACAGCGCAGGACATTCTCTCCAGCGAACAGTTTGTTGCCAGGAGAACCCGCTCCAGCTCCACCAACTCCCACAGCTCCACCAACTCGGAGGTCTCCACCTGTATCGTGGATAGCGTGAGCTCTCAGAgcaaagggaggggaggaggcagAAGGAGGAAGACTGGGACAGAGTCTCTCTCCCCCAGTAACAGGCAGAGTGAGCAGCCTCCAGCCCCCAAGCCCACAGCCAGAGGCAGGAGAAGCCAGAAGGTTGAGGATGATGGTCCACACCCTGTTATTAATGAGAAGGCTGATTCTCAGGAGGCTGGTGGTACCACTAGAGGGCAGAATAAAACTGCCAAAACCAATGAGCCAGACCCTGTAGTAGCAGATGAAGAAACCACTCCAGCCCAGGTAACAGAGGACTCCCCCGTTCCTAGAGGGAATGGAAGAGGCCGGGGCCGAGCCGGCCAGAAAGACAACACACCTGAATCCACCACTACAACAGCAGGAGGGGACACTCCAAGTGAAGAGGGACTGGAGTCTAAAACAggtgggagagggaaagggaggaagagggggcttggagaggaggaggaggaggagaacagtgGGTTCAAGGTTCCCCGGAGGAAAGCTAAGGTTCAGAGGGGAGGGAGATGCAGGGCagcagaggagaaaggagagaaagaggagaaacctGCATCCACTCCAGCAAAGAGAGGCAGAGCCTCCACTGCACAGGTGAAAAAGAtagcagaggaggagaagagtatGGCGGGACAGAGTGagaagatggaagaggaagaggcTGGTGCTGTGCAGAGGAAAGTCCGAGGCAGGCAGTCGACGGTTCAGATAAAGAAGAAAGAGGAACCTGTTTTGGACTCTGTgGTGCCACAGACCCCTACAGGTAAGGGCAGAGGTAAACGTAGGGCCCCTGTGGAATCATCACCACTAGCCAGGACCCCTcgctcctcctctgcctctcccctgtcctccctctcctcccctgggACACTGGGCCCAGCGAGGGCCGCCACGCATTCCTACAAGGTGTTGTTTACAGGAGTGGTGGATGAGGAGGGGGGGAAGGTGGTGTCTTGTCTGGGGGGCAGCCTGGCGAAGGGCGTGGCTGACATGACCCACCTGGTGACTGACCGGGTCCGACGCACCGTCAAGTTCCTGTGTGCTGTGGCCCGCGGCATGCCCGTCGTCACCACCGATTGGCTGGATAAGtGTGGTAAGGTGGGTCATTTCCTACCTACTGACAGGTACCTGGTGAAGGATAGGGAGCAGGAGAACAAGTTCAGCTTCTGTCTGGAGGAATCACTGAGGACCGCCAGCACCCAACCTCTactacagggttATGAGGTCCATGTTACCAGGTCAGTGTTGCCAGAGCCAGCCCAGATGAAGGACATCATCATCTGTAGTGGAGCTCGCTACCTCTCTACGATGCCCTCCACTCAGAAGGCCCAGGCCCGGACCCTAGTGATATCGTGTGGGGAGGACTGGTCTCTCTGTGCTCctgctctctctgcttctctcccagTCCTCAGTGCTGAGTTCCTGCTAACTGGTATATTACAGCAGAGAGTGGACCTGGTAACCCATGTCCTCTCAGCCCCCAAACCCAGGGCCCAGCCAGGAGCCAAAGGCCAggccagggggaggaagagaatgTAACAGACCAAACTCACCTGGGTGGTATTCATTAATTCATACTGTAGCAAAACCATAtgcaacagaaaacaaacactagtgtttcttattggacaagttcaggtaatCCCTCCCTGTTTTAGTCTGTTTTCTACCGTTAGGTGAATATGACCCTGGCATAGCATGCAGCACCCACCTCCACCTGTATAGAGAACAGTAGCAGGACCAGGCCACAGAGGAGTGgtaactacagtactactaccctGGAGGGGCTGGAGACCATTAGACACCTGAGAGAGGGGAGGATTCGGATGTACAAGAGACAgtggcagcatcccaaatgggaccctattgcTTACTTTTGACAAAGAGccctgcactatgtagggaatagggtgctatttgggacgcagacatgAAAGGCTGGTGAGAGGAGACATCCACCTGTATGACCAACTAGACTAGATAGTTGAGAATGTATTCACTCTGATAAGAAGACAAACAAACCCAAGAGATGGAAAACTATTTTTATGTTTATGAGGGTAGAGAGAAAATACATGCAGAGAAATGCTCTGAACATATTTGTGTTCATAAAAAATGATATAAATATGAGTTAACATAGAGAAGACGGAGTAATAGATGAGATAATTTACTGCCTATCCCAGTCATTTATTTGATGTCTCTTCCTCTTTTCCTGTCTTTCCTCCCTCTGCTGATCCTTTATCTATACTGATTAAAAGCCATCCTCGCCTTTTGTATAAAgataacaaatatatatatattagtgccTATTTTACGAGGATAATGTTGAATATACCAGGTGTCTGTCTTCACCAGCTGTGATTGCTGAAGGGACATGTCTTCAATCTTAGAAAAAGGACCGAACTGATTGTTTTAATGCTGCTCGTCCATCTACATCTTTGTATGTAGGAGTTAAATGTGTCTTTATTTACCGACCAATAAACCTTTCATACCGAA

Function

NR:

description
mediator of DNA damage checkpoint protein 1

GO: NA

KEGG:

id description
K20780 MDC1; mediator of DNA damage checkpoint protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933644.1 True 7730 mRNA 0.52 11 28281112 28296740

Neighbor

gene id symbol gene type direction distance location
LOC110485735 LOC106605407 coding upstream 832 28270251 ~ 28280280 (+)
ddr1 LOC106605397 coding upstream 30346 28194562 ~ 28250766 (+)
LOC110485672 LOC106605394 coding upstream 100907 28171846 ~ 28180205 (+)
LOC110485682 LOC106605395 coding upstream 109789 28165160 ~ 28171323 (+)
LOC110534576 dpys coding upstream 371126 27907789 ~ 27909986 (+)
si:dkeyp-77h1.4 LOC106579702 coding downstream 462 28297202 ~ 28318817 (+)
ino80e ino80e coding downstream 34993 28331733 ~ 28334614 (+)
LOC110485753 LOC106605405 coding downstream 38770 28335510 ~ 28338650 (+)
vars1 LOC106605401 coding downstream 42099 28338839 ~ 28356242 (+)
si:ch73-22o12.1 LOC106605406 coding downstream 102875 28399615 ~ 28469748 (+)
G128531 NA non-coding upstream 15658 28264194 ~ 28265454 (+)
G128474 NA non-coding upstream 100111 28180682 ~ 28181001 (+)
G128459 NA non-coding upstream 140207 28140278 ~ 28140905 (+)
G128546 NA non-coding downstream 7744 28304484 ~ 28304997 (+)
G128549 NA non-coding downstream 15086 28311826 ~ 28382924 (+)
G128561 NA non-coding downstream 83042 28379782 ~ 28380102 (+)
G128679 NA non-coding downstream 271576 28568316 ~ 28600609 (+)
G128652 NA non-coding downstream 302547 28599287 ~ 28644026 (+)
G128436 NA other upstream 191667 28088647 ~ 28089445 (+)
G128185 NA other upstream 563949 27716482 ~ 27717163 (+)
LOC110485466 LOC106605529 other upstream 977557 27288172 ~ 27303644 (+)
G127644 LOC106605534 other upstream 1090519 27189991 ~ 27190593 (+)
LOC110485212 LOC106605536 other upstream 1120467 27147880 ~ 27175747 (+)
LOC110485990 LOC106579931 other downstream 635316 28931988 ~ 28951235 (+)
G128853 LOC106605419 other downstream 643159 28939899 ~ 28981288 (+)
LOC110534631 LOC106580029 other downstream 1180877 29424822 ~ 29478401 (+)
G129155 NA other downstream 1187893 29484633 ~ 29485130 (+)
G130308 NA other downstream 1303286 29600026 ~ 29641096 (+)

Expression


Co-expression Network