ino80e (ino80e)


Basic Information

Item Value
gene id ino80e
gene name ino80e
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28331733 ~ 28334614 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556935.2
cgcggaagTAGACTCAATAATGTAATGTAGGTAGGCCGTGAATAGCCTCACAtgccagtacagtaggtggcggtataCGCGAACTGACAACCAAATCCTAAAGAAAAAGAACAGACGTAAACAAAGAGCACGTCGCACATATTCATTCAAACGAGAGCACGTCCACTGACGGTTCAACCACAGCGTCAGAAATGAACGGTCAAGCCGATATGGAGGTGGACTACAAGCAGAAATACAAAAATCTCAAACGCAAATTGAAATTCCTGGTTTATGAGCAGGAGTGTTTTCAGGAAGAGCTCAGAAGATCCCAGAGGAAGCTGCTCAAAGTGTCCCGAGATAAAAGTTTTCTGTTGGACCGATTGTTACAATACGAGAGGGTAGACGAGGACTCCTCAGATTCTGATGCCACAGCCTCTTCGGAGAACAGTGAAGGAGAGGGCaccagggagagagacggaggaaagAAGAGAAGGAGTAGCCCTGGCGTTGGCCTTCCCTCGTCCtcatcctcccatctctctctcctctctcgttctgGAGTGAACCCTCTCCAGTCGTCCGGCAGTACCCCCTACCTCAACACATTGCCCTTCCCACCAGAGTATTTGGCTCCACCAGCTGAGAgaatgaagaaagagagaaagacaaaggcgCCCAAACACAAGAAAGAGACATCGGGGaagGTGGTGGCCCCTCTAGCAGCCAACTACCCAGCGGGCCCGACTGCCCCTCCCACATCCAGCGCCTCGTTCAACTGGGTGCCCAGGCAGATGCTGAGTGGAGATGCcgcggaggaggagggagagagcgacgGAGACTCAGACAGAGGAGACGATGACaggggggaaggagaagaggCTGACCTTGTCATCGATATCCCCAACgagtgaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaggattGTTAGAAAGAGTGTGTAAAAGcacaatgtgagtgtgtgtggattCAACCCCTCCCACTGTCAAATGCTTAGCCAAGCTCACCCCATTGGACCTTCAGGTTACTGCAACAATATCTCTCTCTAAACAATGTGACCTGTCATAATAATGTTGCTAATTGGCTCCTTTAATGTCATTTTACTGCCTTCTACTGTAATACAAGTCATGGAAGAAATGGTATTGATGGCATGGACAGCTACAGGACTGCTTACATGTAGCACCTACCTTTTTATGGGAAACTGTCAAATAATACATTTTCTGTTGTAGATAATGGAGACGTTATGTTTTCTATCAATTACTTTTCAAAATGAAATTGCATTAAAGTGGTAACATTTCAGATGA
>XM_021556951.2
cgcggaagTAGACTCAATAATGTAATGTAGGTAGGCCGTGAATAGCCTCACAtgccagtacagtaggtggcggtataCGCGAACTGACAACCAAATCCTAAAGAAAAAGAACAGACGTAAACAAAGAGCACGTCGCACATATTCATTCAAACGAGAGCACGTCCACTGACGGTTCAACCACAGCGTCAGAAATGAACGGTCAAGCCGATATGGAGGTGGACTACAAGCAGAAATACAAAAATCTCAAACGCAAATTGAAATTCCTGGTTTATGAGCAGGAGTGTTTTCAGGAAGAGCTCAGAAGATCCCAGAGGAAGCTGCTCAAAGTGTCCCGAGATAAAAGTTTTCTGTTGGACCGATTGTTACAATACGAGAGGGTAGACGAGGACTCCTCAGATTCTGATGCCACAGCCTCTTCGGAGAACAGTGAAGGAGAGGGCaccagggagagagacggaggaaagAAGAGAAGGAGTAGCCCTGGCGTTGGCCTTCCCTCGTCCtcatcctcccatctctctctcctctctcgttctgGAGTGAACCCTCTCCAGTCGTCCGGCAGTACCCCCTACCTCAACACAGTGGTGGCCCCTCTAGCAGCCAACTACCCAGCGGGCCCGACTGCCCCTCCCACATCCAGCGCCTCGTTCAACTGGGTGCCCAGGCAGATGCTGAGTGGAGATGCcgcggaggaggagggagagagcgacgGAGACTCAGACAGAGGAGACGATGACaggggggaaggagaagaggCTGACCTTGTCATCGATATCCCCAACgagtgaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaggattGTTAGAAAGAGTGTGTAAAAGcacaatgtgagtgtgtgtggattCAACCCCTCCCACTGTCAAATGCTTAGCCAAGCTCACCCCATTGGACCTTCAGGTTACTGCAACAATATCTCTCTCTAAACAATGTGACCTGTCATAATAATGTTGCTAATTGGCTCCTTTAATGTCATTTTACTGCCTTCTACTGTAATACAAGTCATGGAAGAAATGGTATTGATGGCATGGACAGCTACAGGACTGCTTACATGTAGCACCTACCTTTTTATGGGAAACTGTCAAATAATACATTTTCTGTTGTAGATAATGGAGACGTTATGTTTTCTATCAATTACTTTTCAAAATGAAATTGCATTAAAGTGGTAACATTTCAGATGA

Function

symbol description
ino80e Acts upstream of or within brain development. Predicted to be located in nucleus. Predicted to be part of Ino80 complex. Is expressed in brain. Orthologous to human INO80E (INO80 complex subunit E).

NR:

description
PREDICTED: INO80 complex subunit E isoform X2

GO: NA

KEGG:

id description
K11669 INO80E; INO80 complex subunit E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556935.2 False 1315 mRNA 0.48 8 28331733 28334614
XM_021556951.2 True 1216 mRNA 0.48 7 28331733 28334614

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-77h1.4 LOC106579702 coding upstream 12916 28297202 ~ 28318817 (+)
LOC110485723 LOC106605400 coding upstream 34993 28281112 ~ 28296740 (+)
LOC110485735 LOC106605407 coding upstream 51453 28270251 ~ 28280280 (+)
ddr1 LOC106605397 coding upstream 80967 28194562 ~ 28250766 (+)
LOC110485672 LOC106605394 coding upstream 151528 28171846 ~ 28180205 (+)
LOC110485753 LOC106605405 coding downstream 896 28335510 ~ 28338650 (+)
vars1 LOC106605401 coding downstream 4225 28338839 ~ 28356242 (+)
si:ch73-22o12.1 LOC106605406 coding downstream 65001 28399615 ~ 28469748 (+)
LOC110485836 LOC106605411 coding downstream 202919 28537533 ~ 28687330 (+)
LOC110485894 LOC106605414 coding downstream 385322 28719936 ~ 28780547 (+)
G128546 NA non-coding upstream 26736 28304484 ~ 28304997 (+)
G128531 NA non-coding upstream 66279 28264194 ~ 28265454 (+)
G128474 NA non-coding upstream 150732 28180682 ~ 28181001 (+)
LOC110485682 LOC106605395 non-coding upstream 160413 28165160 ~ 28171323 (+)
G128561 NA non-coding downstream 45168 28379782 ~ 28380102 (+)
G128679 NA non-coding downstream 233702 28568316 ~ 28600609 (+)
G128652 NA non-coding downstream 264673 28599287 ~ 28644026 (+)
G128719 NA non-coding downstream 298982 28633596 ~ 28634986 (+)
G128640 NA non-coding downstream 353639 28688253 ~ 28689570 (+)
G128436 NA other upstream 242288 28088647 ~ 28089445 (+)
G128185 NA other upstream 614570 27716482 ~ 27717163 (+)
LOC110485466 LOC106605529 other upstream 1028178 27288172 ~ 27303644 (+)
G127644 LOC106605534 other upstream 1141140 27189991 ~ 27190593 (+)
LOC110485212 LOC106605536 other upstream 1171088 27147880 ~ 27175747 (+)
LOC110485990 LOC106579931 other downstream 597442 28931988 ~ 28951235 (+)
G128853 LOC106605419 other downstream 605285 28939899 ~ 28981288 (+)
LOC110534631 LOC106580029 other downstream 1143003 29424822 ~ 29478401 (+)
G129155 NA other downstream 1150019 29484633 ~ 29485130 (+)
G130308 NA other downstream 1265412 29600026 ~ 29641096 (+)

Expression


Co-expression Network