LOC110485753 (LOC106605405)


Basic Information

Item Value
gene id LOC110485753
gene name LOC106605405
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28335510 ~ 28338650 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556914.2
ggaggaagagtgagCTTGtcagtgagggagggagaagcaGAGTGTAAGCAAGACTGTGCCCAGACACAGACGGCACAGCACACACAGTCCAAAGAGAAAGACATGGGTGGAGACGCTGATGGGGTGTAAGAGAAAAAAGAAGGGAGAGATTGAGAAAGGGATAAAAGAACGACATACCAGAGATTCCCTGGCTGTCAACCCTAGCTATCGGCCATTATCCTCTCCCATCTGCGTAGATACAGCACAAACCTCTGGATTATttaccagcctctctctctgtgagtgtgtgggttTGCTGAGATCACCATGCTGCTGCTGCGGTGGTGTCCTGCTGGTGTCAGTGTCAGTACTGCAGGCTGGGCAGGGTGGATCTGGCTGGGGCTGACTCTGGAGCTGTCTCTACCAGTCACGGCACTATCAGAACCAGACCCAGGCTTCTCCCTCTGCAGACAGAGCTTCTACAGACAGACCCCCCCTCTGGGCGGGGGGGCCCTCCTGACCCCCATCTGTCACAGGCTGCCAGGGGGACAGTTGTTTGCCACGCTCTACCACCCGACCTGTGACGCAGCTGTTTACTCTGCCTTTCATCTCAGAcaaggatggggggagagaggaggaaaggaggaggggacagagaaggaggaagaggatgtcagacgggaggagaaagaggacgaAGGGTCCCAGAGTCCCCCCCTGGTGATGACCCCAGCCCTGCTCCGAGGGGATGTGGCGGGGGGTAAACCCCAAGCTCACTCTGACTCTCCCCTTCACCAGTGGGACTCCCTGGTCACAGAGCTGATCAAGAGCAGCGTCCTGCCCCAGTGTGGCTCCACAGGGGGCCAGCTCTACGTCCTGACAGGGGCCACAGGGCTCAGGCTGGGGCCCGGGATGGAGGAGGGTGGGGATGAGGGGTGTGAGGCTGGGGTGCAGTGGTCTGCTGTGTGCTGTGCTGGcccagagggacagagtgggTTCAGTGTGGGGGtcgtgagagagacagggggaggggagagggtggtGAGTGTTAAGGAGCTGGAACACATGATTGGAGTGACAGATCTATTTTCAGAGGGTTGCGGGGAAGCAGATGGGGACACGGAGGGAGACATAGTGATACTGCTCAGTGATGCGATGGTCGGAGTTGTAGAAAAGCAGAGAGCAGTCGCAAGGCCAGACGCCATTGAGGAAACACTAGATGAGACTACTGATCGAAGCCTAGAGGCACTACCTGCTGACACAGaacctctcatccctccctcagAGGACAACGAGACACTGTCCTCTGAGTTGGACACAGAGTCGTCCAGCAACCCTCTGGTGTATATCatcacctcctctgtctccctgctcaTGGCCCCTCTACACCCTGTAGTCTCCACCCTCATTGGGATCCCTGGACAGGTGGCCTTTGTCCTGCAGGAGGACATGGGGATCCTGTCTGCCCTGCCAGGTGACATCCTCTCTGTGTTCTACAACATGGCGTCTGACCTGGTGTCTGGAGTCGGCTCAGTCACAGGCCTGATACTTGGTGTGGGGGAGATGTGCTTCTCCACTCTATACTGCATTACAGCCCCTCTTGTTGGCTCCCTGTTCACCAGCTGCCAGGACGGGGTCACAGGGGTGGGCACCCTGGCCTGGGATGGGGTGGGCATATTCAGGGGGATTGCGGACAGTGCCTGGTGGGTGTCCAGGGTGGTCGGGGACCAGGTGTGGGAGCAGGGTGGGGGGTATGTGGGGTCGGTGGTGTCTGAGATGGGAGGGCAGGTGAAGGCAGTGAGTGGGGGAATGGGGAAGCTGGCGTGGAGGTGTGGGAATGGGGTGGGGAACGTAGTGAGTTTGGCAGGAGGGCTGGTAGTAGGGAGTGCAGAAACGGTTGTGGAGAATGTGATGGAGGTCTTTGGGCAGGACCAGAACTGTGGATGGTTTGGGTCTACAGAGAATGTTCATCAATAACATTGCAGATTTTTTGCAAACCTTGAAAATTGTATGTCGTGTTCTTATAAAGTATGTAAATATGCACCAGATAGCAAGAGAGAATTGATGGGTACACCGCAATGCCAATGTCTCTAGCTAAGCTGTCTAACATAAACGCATAGTTAGGCACACAAcacattttcatattttttttgctTCCTAAAGTAGACGACTTCTACTTCTATTACTTCTTAGTTGTAAAGAAGCAGGATCCCAAAAGACTAATGCTGAGATTAATGGTATATGTGTCAGAATGTGAAGCATGGTAGCCCCATGGCCATTTGATCAATTACAATATGGTATTATTTTGGGGAAACATGCTTTTACTGTGTGAGTTCATATGGTAATAGATGTTAGAATTTATGTTACTTTATGAACTATATGCTTGCTTGATTAAAACGGATAATTGATTGATCACATCCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556914.2 True 2400 mRNA 0.54 3 28335510 28338650

Neighbor

gene id symbol gene type direction distance location
ino80e ino80e coding upstream 896 28331733 ~ 28334614 (+)
si:dkeyp-77h1.4 LOC106579702 coding upstream 16693 28297202 ~ 28318817 (+)
LOC110485723 LOC106605400 coding upstream 38770 28281112 ~ 28296740 (+)
LOC110485735 LOC106605407 coding upstream 55230 28270251 ~ 28280280 (+)
ddr1 LOC106605397 coding upstream 84744 28194562 ~ 28250766 (+)
vars1 LOC106605401 coding downstream 189 28338839 ~ 28356242 (+)
si:ch73-22o12.1 LOC106605406 coding downstream 60965 28399615 ~ 28469748 (+)
LOC110485836 LOC106605411 coding downstream 198883 28537533 ~ 28687330 (+)
LOC110485894 LOC106605414 coding downstream 381286 28719936 ~ 28780547 (+)
LOC110485935 LOC106605415 coding downstream 444924 28783574 ~ 28865311 (+)
G128546 NA non-coding upstream 30513 28304484 ~ 28304997 (+)
G128531 NA non-coding upstream 70056 28264194 ~ 28265454 (+)
G128474 NA non-coding upstream 154509 28180682 ~ 28181001 (+)
LOC110485682 LOC106605395 non-coding upstream 164190 28165160 ~ 28171323 (+)
G128561 NA non-coding downstream 41132 28379782 ~ 28380102 (+)
G128679 NA non-coding downstream 229666 28568316 ~ 28600609 (+)
G128652 NA non-coding downstream 260637 28599287 ~ 28644026 (+)
G128719 NA non-coding downstream 294946 28633596 ~ 28634986 (+)
G128640 NA non-coding downstream 349603 28688253 ~ 28689570 (+)
G128436 NA other upstream 246065 28088647 ~ 28089445 (+)
G128185 NA other upstream 618347 27716482 ~ 27717163 (+)
LOC110485466 LOC106605529 other upstream 1031955 27288172 ~ 27303644 (+)
G127644 LOC106605534 other upstream 1144917 27189991 ~ 27190593 (+)
LOC110485212 LOC106605536 other upstream 1174865 27147880 ~ 27175747 (+)
LOC110485990 LOC106579931 other downstream 593406 28931988 ~ 28951235 (+)
G128853 LOC106605419 other downstream 601249 28939899 ~ 28981288 (+)
LOC110534631 LOC106580029 other downstream 1138967 29424822 ~ 29478401 (+)
G129155 NA other downstream 1145983 29484633 ~ 29485130 (+)
G130308 NA other downstream 1261376 29600026 ~ 29641096 (+)

Expression


Co-expression Network