LOC110485762 (LOC106605404)


Basic Information

Item Value
gene id LOC110485762
gene name LOC106605404
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28356399 ~ 28373544 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556924.2
CGCTTGAACTTTGTATGTTTGGAATTTATATCCTGTGTCGGCTACCGGAGGAAGAATGGCCGGCTGGATGTGGTTTCGTTGCTTTTTGGGGCCTCATCTCCAGAGAGTGCACCGTTCACAGGAGGAGTCCCGACCCGAAGGAAGAGCAGGCAGGAGGGGATGGACTTATCAACCCAAGAGCCTGGAGAAACACACTGACAGCATCCTCGGATGGGCGTCAGCTTTGTGGTCTCTGTCATACTAcagctcccctctcctcctctgctacCTTTACAGaaaagggtaCATCTGCAGCAGTAAGCTGGTACCTGTCAGTCAGTATGTGGGAAGTGTAATGGTTTGTCTGCTGGGAGTCGCCTTTCTGAGAGgTTGGGGACGGTGGAGGAACTCTGAGTATCAACAGTTCATCTCcattctggaggaaaccaggaaGAACCACACGCCTAGCAACAAGAAAAAGCTGGCCTGCTATGATTTTGACTTCTCTCACTGGCCGGCAGACTTCAGCTGGGAAGAAGTTAGCAATCCGAAGCTGCTGTCCAAGGCAGGAGTGTCTCTACTGAAGCCAGAGCCCAAACTGAGAGGGGCAGCAGACAGCGTGCTTAACTCTTTACGCACTCTACCATGCCACATCGTCAGTTTTCTGATTGCCCACTCATTTGGGAGGAGGATTCTGTACCCTGGGTCTGTATACCTACTGCAAAGGGCTATGAGACCCATGCTACAACAGGGCCAGGCTAGACTTATAGAAGAGTGTGAGGGCCAGAGGAACAAGCTGGTGGCGTGTGATGGGAATGAGATTGATACCATGTTTGTGGACCGCAGGAGAGAAGAGGGACTGCACGGACAGACTCTGGTGATCTGCTGTGAGGGGAACGCAGGCTTCTATGAGGTGGGCTGTATGAACACTCCATTGGAAGGTGGATACTCAGTGCTTGGCTGGAACCACCCTGGCTTTGCAGGAAGCACGGGCGTACCGTTCCCCCAGAACGAGGCCAATGCCATGGATGTAGTGATCCAGTTTGCAGTGCACAAGCTGGGCTTCCAGCTCAGTGACATAATGGTGTATGCCTGGTCCATAGGGGGATTCACAGccaGTTGGGCTGTGATGTCCTATCCAGAGATCCAAGCGCTGGTATTGGACGCCTCCTTTGATGACCTGCTTCCGCTGGCCCTCAAGGTCATGCCCGACAGCTGGAGGCCTCTGGtgacacacacagtcaggcaGTACATGAACCTCAACAGCGCAGAACAGCTCTGCAAGTACCAGGGACCAGTGCTTCTGATCAGAAGAACCAAAGATGAGATCATTACCACCACGGGTCCAGAAGACATCATGTCCAACAGAGGAAACAACCTCCTGCTCAAACTTCTGCAGTTCAGGTACCCCAAGGTGATGACAGACGATGGAGTCAGGGCCATCAGAGCATGGCTGGCAGCCTCCAACCACGTAGAAGAGGCAGCGGTGTACAGTAGCTATGAGGTGGATGATGACTGGTGTGTGTCTGTTCTGCAGTCGTATAAGACGGAGAGAGACGTTTTCTTCCCCTGGAGCGTTGGTGAGGACATGACACCGGAGGGAAGACGACAGCTGGCTCTCTTCCTGgcACGGAAGTACATGCGGAACTTCGACTCAACTCACTGCACTCCTCTCCCTTACTCTGAATTCGCTGCCCCTTGGGGACTGTAAGTGTTGACGGATGGATAGAAACGAGGAGCAAAGATGCAGGCTAGACCAACCAATCAGAAGAGGTATACAGAGCATGGATTGAATGTATCTATGGGAGGTGTTCAAGGCAGCTACACCCAGACGGTATTAGAACGTTGTGACCCTGCCCACCTGTGGTTACCCCATTGGCTCACAGCAAAAACGTGGCATTTTGTCTACTTGTTTTAATCAATTACAAAACGATATGTCTAAAGATTACTACTTAGAAAAACGTAATTTTGCCTCATGCCCCTTATGACAATGCTATCGGCCGACCGACCGGAACATCAAGCTAGTCAAGACTGACGTTAAACAAACTGTACTTAACAATGCTTTCCACACGCATAGCCTACTTACATTCTGAAGCCACTAGGTTCTTCTCATAGGCTCTATTTCCCTACGTTGGGAGCATTGTTAAGTCTGTTGTGATTTTTGACCTGGCTACATGCACATTGAACACAGCAGCTCTTtggaatgttttgttatttctgtagaAACAAAAGGTAAGCTCTTTTCCAATGGGATGAATGGTAAAGAATATTTGTTTTCCCAATTTGTGGGCGTGGTCTAGGGGATTTCTTTATTGCGGgaggttgtggtatatggccaacataccacagctaagggctgtatccaggaactccgtaagaacagcccttagctgtggaatgttggccatataccacaacccccacgggccttattgcttaaatatacactGCCGTCCTCGAACTAGATATTTAAAATACTCCCTTCCATAAAGTAAGCACTGATCTCTAGGTAGTTGGATAAAAGGCTCCATTCTATTGCCTGACTACATTACTACAAGGGAGAAAAGGAATAAGGAGCTTGTTCCCTCCCTCTGCATTTTAAAGTATACAGCCAGGCCATTCTCATGTTCTAAAGCGTGACTTTTCTTGTGGGCACTGTCATTATGAGAAAAGCTGGATCCTGTTAAATAAAATGTTGGCAAAATAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556924.2 True 2686 mRNA 0.49 19 28356399 28373544

Neighbor

gene id symbol gene type direction distance location
LOC110485793 LOC106605408 coding downstream 27203 28318045 ~ 28329196 (-)
LOC110485712 LOC106605398 coding downstream 90933 28252625 ~ 28265466 (-)
LOC110485705 LOC106605396 coding downstream 191544 28152489 ~ 28164855 (-)
LOC110485663 LOC106579570 coding downstream 206424 27933389 ~ 28149986 (-)
LOC110534585 LOC106605382 coding downstream 426583 27927664 ~ 27931710 (-)
g6f-like-a g6f-like-a coding upstream 4274 28377818 ~ 28401529 (-)
LOC110485830 LOC106605406 coding upstream 96165 28468401 ~ 28471494 (-)
LOC110534614 LOC106605399 coding upstream 102279 28475823 ~ 28533709 (-)
LOC110485869 LOC106605412 coding upstream 330139 28703683 ~ 28706157 (-)
LOC110485879 LOC106605413 coding upstream 333319 28706863 ~ 28714039 (-)
G129588 ino80e non-coding downstream 21923 28331695 ~ 28334476 (-)
G129582 NA non-coding downstream 45667 28310319 ~ 28310732 (-)
G129572 LOC106605400 non-coding downstream 65148 28290531 ~ 28291251 (-)
G129547 NA non-coding downstream 124001 28230607 ~ 28232398 (-)
G129507 NA non-coding downstream 164856 28191336 ~ 28191543 (-)
G129631 LOC106605406 non-coding upstream 62422 28435966 ~ 28450726 (-)
G129773 LOC106579830 non-coding upstream 302481 28676025 ~ 28677493 (-)
G129776 LOC106579830 non-coding upstream 310830 28684374 ~ 28687610 (-)
G129250 NA other downstream 589867 27766157 ~ 27766532 (-)
LOC110485245 ubr5 other downstream 1078275 27231538 ~ 27278158 (-)
LOC110539285 LOC106579350 other downstream 1693385 26641958 ~ 26675649 (-)
LOC110486376 LOC106605451 other upstream 1495502 29859575 ~ 29878744 (-)
c2h8orf37 cssa05h8orf37 other upstream 2516149 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 2523482 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 2818875 31192419 ~ 31196292 (-)

Expression


Co-expression Network