LOC110485830 (LOC106605406)


Basic Information

Item Value
gene id LOC110485830
gene name LOC106605406
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28468401 ~ 28471494 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002467991.2
TTTGAGCAATATGGCAGAACTCTCATGTCCTGTGGCTGGATCCCTCAATACAAGCTCTGAAAAACATTGTCACATTGGCTGCCACCCAGAGGCATAGAGACCTACAAAGATGTCATGGGGGAAAGCAAAGATAAACTGTGGGAAAAGTGTTGCTTCTGTTCGACTCAGGCTGTTGCCATAGTAACAGCGGAGCTTATCAACAACAGGCGATGTTTTGTTTTAGCAAAGATATTAACGATAGCTAGCAAGCAGGCTATCAAAGGAATATTAGCTAGCTGATGAGATCAAATGGCTGACAAACGTGGTTTGGAGAAACTGGACTTTGGTGCATTAAGCATCGAGCAACAGCAGCAACTCCGACAATTTaagATGTATTTCTCAAAAGACCCAGACATTCGAGAGTATGCAGCAGATTACTTCACCGACCCAAACCTTGGTTTGATCATTGGCTCCAAACTGCAGAGCGATCCTGCCGACACAGGCACAGACTGAATCCTTACCGGATTGCTTGGCAGTTCAACTGTTATTGAAGTGTAAAGCTGTAACAGGCCTCTTTCTCTGTATTGACTAGTTATGTGTCAAAGTAACAATATAGAAATataaaacattatataaagtgggtATGTACTGGCACCCAGGCAGATGTTCTTACTGAGCATCATTACAACAGGTTAGTTACAGGGCTACAGAAGGATGTTTTATACCGCTGGTTGATTGGAAAATATAGATTTCTAGGCCTATAGGGTGGAGTGGACAGCCTCTTTACAGGAGTTCTCAGGGAAAAGTCTAAATGGGATCATTGGGACGTCCCAACTCTGACGTTAAGCCATCGATGTTGAAATATAAAACGGTTAAGGTTACCGATGTCCCAAGGATTCCGGATAGCACTAACCTTTTCCTCAAGCCTCAAGAGTTCCCCCTTCTGGACTCTTATGTACTTCCACTAACTCCCCAACTcatcagatgaaacaaaaaacaTTAAGCAAGATGAGACAATGTGACCGCAGCAATACTGACCATAACTTTAGAAAGATCTGACCACACTGGATACACAGTTTAAATGTTTAATGAATTAAAAATCATCAAGTAA
>TU149424
GAGCTTATCAACAACAGGCGATGTTTTGTTTTAGCAAAGATATTAACGATAGCTAGCAAGCAGGCTATCAAAGGAATATTAGCTAGCTGATGAGATCAAATGGCTGACAAACGTGGTTTGGAGAAACTGGACTTTGGTGCATTAAGCATCGAGCAACAGCAGCAACTCCGACAATTTaagATTACTTCACCGACCCAAACCTTGGTTTGATCATTGGCTCCAAACTGCAGAGCGATCCTGCCGACACAGGCACAGACTGAATCCTTACCGGATTGCTTGGCAGTTCAACTGTTATTGAAGTGTAAAGCTGTAACAGGCCTCTTTCTCTGTATTGACTAGTTATGTGTCAAAGTAACAATATAGAAATataaaacattatataaagtgggtATGTACTGGCACCCAGGCAGATGTTCTTACTGAGCATCATTACAACAGGTTAGTTACAGGGCTACAGAAGGATGTTTTATACCGCTGGTTGATTGGAAAATATAGATTTCTAGGCCTATAGGGTGGAGTGGACAGCCTCTTTACAGGAGTTCTCAGGGAAAAGTCTAAATGGGATCATTGGGACGTCCCAACTCTGACGTTAAGCCATCGATGTTGAAATATAAAACGGTTAAGGTTACCGATGTCCCAAGGATTCCGGATAGCACTAACCTTTTCCTCAAGCCTCAAGAGTTCCCCCTTCTGGACTCTTATGTACTTCCACTAACTCCCCAACTcatcagatgaaacaaaaaacaTTAAGCAAGATGAGACAATGTGACCGCAGCAATACTGACCATAACTTTAGAAAGATCTGACCACACTGGATACACAGTTTAAATGTTTAATGAATTAAAAATCATCAAGTAACCAGCGCATCAGGCTTTGCTTTATTAAAAACATACATAGCGCAGTAAAAACAGGTCAATTCCATCTGTTACAAAGCATGACAAAATCATTCAGAATTCTGTTTGATTCACATTTTATAATCTGACATGCTACAAAATAGGCACATCTGGTTTAACAATTAAGTGATTGTATAGAGAAGAAGACCCTGAAATTGTATAAAAACCTAGACCCTGACAATATTGGACATTTCAACAGCAGGCCTACGTAATACATTCTGTAACCAACATACTGTGGTAGAGCATGTGAATAGAGCTTTTAAATCCTGAGCAAACAGGCACAAATCATCAATGTTTAGACACGTCAATGTTAAAAGGTAACAGAGATTTCCTTTTTATATATACAAAATTGTCAGTAACTTACATTGTTAGATTTTTGTTCAGGCAATTGATTATCCCTCTCTTATGGCTTGTATTGGGCTCCAGGAATCCAGAATTGTATCttagacacacttactgtacacatggGACTTTAACCACAACATTCAAAGGAGTTTCAACCAACCGAGATAAAAGTTAGTGTTCTTTTATGTTGTTCTTACTTACACAGCATTTTAACGGTAAAGCAGATCCCCCTTTTAAAAACATGATTCCCGTTATTAGAACCCAATACATACACTCACTTTAGTTCACAATGTAAAATTCTAGATTGGAGATACTGATTGAACGGCAATGACTACAACCATCACACACCGCAGCtatcccacagacacacacatccagtGTCCGATGTTCTTCACGTACAAACAGGTTTAGTCCCACACACACTTCCAATGTCTCCCATCTCCCAATGTCTTCACACAAACATGGCCGGGGACACAAAGCTCTCTCCACGAGTCGCTCCGGCGGCAGGGGGGTGGTCCTCCTCGTTGTCATGGTAATCATTGGGCTTGTACTGGTTGGGGGCGTACAGGTGCGGGACTTCGTTCAGCCTGGGTTCATCCCAGCCAGAAGGGGCGCCAGCGTAGCGCAACTCCTCCGCATCACAATTGTATTCCTCATCACTGCATGCATCCAG

Function

NR:

description
nectin-2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002467991.2 False 1090 mRNA 0.42 3 28469709 28471494
TU149424 True 1911 lncRNA 0.41 3 28468401 28471305

Neighbor

gene id symbol gene type direction distance location
g6f-like-a g6f-like-a coding downstream 68180 28377818 ~ 28401529 (-)
LOC110485762 LOC106605404 coding downstream 96165 28356399 ~ 28373544 (-)
LOC110485793 LOC106605408 coding downstream 140513 28318045 ~ 28329196 (-)
LOC110485712 LOC106605398 coding downstream 204243 28252625 ~ 28265466 (-)
LOC110485705 LOC106605396 coding downstream 304854 28152489 ~ 28164855 (-)
LOC110534614 LOC106605399 coding upstream 4329 28475823 ~ 28533709 (-)
LOC110485869 LOC106605412 coding upstream 232189 28703683 ~ 28706157 (-)
LOC110485879 LOC106605413 coding upstream 235369 28706863 ~ 28714039 (-)
LOC110485888 LOC106579893 coding upstream 243898 28715392 ~ 28718511 (-)
LOC110485998 LOC106605419 coding upstream 506335 28977829 ~ 29007911 (-)
G129631 LOC106605406 non-coding downstream 18983 28435966 ~ 28450726 (-)
G129588 ino80e non-coding downstream 135233 28331695 ~ 28334476 (-)
G129582 NA non-coding downstream 158977 28310319 ~ 28310732 (-)
G129572 LOC106605400 non-coding downstream 178458 28290531 ~ 28291251 (-)
G129547 NA non-coding downstream 237311 28230607 ~ 28232398 (-)
G129773 LOC106579830 non-coding upstream 204531 28676025 ~ 28677493 (-)
G129776 LOC106579830 non-coding upstream 212880 28684374 ~ 28687610 (-)
G129777 NA non-coding upstream 217690 28689184 ~ 28689650 (-)
G129778 NA non-coding upstream 218284 28689778 ~ 28690079 (-)
LOC110485663 LOC106579570 other downstream 319723 27933389 ~ 28149986 (-)
G129250 NA other downstream 703177 27766157 ~ 27766532 (-)
LOC110485245 ubr5 other downstream 1191585 27231538 ~ 27278158 (-)
LOC110539285 LOC106579350 other downstream 1806695 26641958 ~ 26675649 (-)
LOC110486376 LOC106605451 other upstream 1397552 29859575 ~ 29878744 (-)
c2h8orf37 cssa05h8orf37 other upstream 2418199 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 2425532 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 2720925 31192419 ~ 31196292 (-)

Expression


Co-expression Network