LOC110485879 (LOC106605413)


Basic Information

Item Value
gene id LOC110485879
gene name LOC106605413
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28706863 ~ 28714039 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557083.2
tgatgagggggaaaactattgaatcacttttagaataaggctgtaatgtaaaaaaaaaatgtggaaaaattcaaggggtctgaatactttccgaatacactgcaCATATAGTTATATTTTCTGAAAAATTTAAAGATTGATTCACCCTTTTTCCTTCATTTTTGAGTTTGTATGTTATAGCTTTTTTCTTCTAAGAATGTGACAGAAACCTGACTGGGGCATTTGCTTTTTAACAAGCTAACAGTGTCACAACACTgctgtctgtttaaaaaaaacacaaataaaaaaaGCTGAGACTGCTGTTTTGTAAATAGACAACACAATAGGACTTGGCATgaaacatatatactgtatacatgacTGTCTGGGATTTGTGATTACCTTCATTTTTACATTGTCTTCAATAACATGTTTTCTTTTTGATTTCAAACCACACTCTTGATAGTTTGCTCATGGTATAAGATATTCTGTATGTAATGGGCATTTAGACAATCTTGTTCAGTGACATTTCCCACCTGTACCTTTACTCGATGTTGACTTATTCAGCTTGGTCTACATGCACAGAGATACATCAATTCACACCAAAACAACTTAAACAACACAGGGACATAGCCTTGACATAGCTTACCTGAAATAAGGAAGTGAGACTCAGAAAGCACAAGTGTCAAGGAAAGTAAATGGCCAGCCACTTCTCGTTAAACCACAGAAAATGCGTTGTTGAACGAATCTTTCTAGGAAACACGTATTGTCAAACCTCATCTAATATGGAAGCAAACTATTGTAAGATAAAGCACAAGAGGCTGGAAAAAGCCCAAAGCAGTGCCCCTAAATCATGTAAAAgatgaagtgccttgctcaagggcacaacggcagcaGGCTGCACATGATGTTCTGATGCCAGCAACTCTGTGGCTGCCGGCACACTCACACCAAATTTCCCCATCAGCCCTGAAATTCAAACCGGCAACACTTCGGTTACCAGCCTACTCCTTCTTCTACTGCAGACATAACCCACACAAGGACTACTTCCATGAATAAAAGTTACGGAATTGGCTTTCTAAGATGTTTAAGATGTACTCTATTCATTTGTGTCTTTCCATCTGAAAAGCAGTTCAAAGCAGCATCTACATGCGTGACAGATATCTGTATGTTTGGTGATGTTTCCCTCACCCACACTCATTCCCAGACATGTAGTTAGAGGGCCATTACAGGAAACCCACATTAACACCTCAGCCTGCTCAATGCAGAAATGCAAAGAAAATCGTTATCTAGAGCACACCTTACTAGAAAAAAAGTTGCAGTCATTGGTACAAAAGAATAGAGTAGAGAAAAACAGTAGTTTCCCAGCCAGACTGTTTCAACCAGCATACACATTATCACCAGAGGGAAGGTTACAGCATTCAACCTGTACATCAGAAAAGAAGATATTGggTAAgatgaacacaacccaggccaCCAGCACAGACAATTACTATGGCCATGGCAACTATGAAAGCCCTTGTAGCACTGGCACCAGTCTAACCCAAGGGTCCAACTACCAGCCCATTCTCTTCTACCTGGTGTTCACCCTGGGTCTGACAGGCAACAGTCTGGTGCTCTGGGTCCTCCTCAAGTACATGAAACTGAAGACAATGACAGACATCTGTCTGCTGAACCTAGCACTATCTGACCTGCTCCtcgccctctccctgcctctctgggCCCACCACGCCCAGGGTCATGAGTTTAAAGGGGACAGTCCGTGTAAGATCATGGCTGGTGCCTACCAGGTGGGCTTCTACAGCAGCATCCTGTTTGTGACCCTGATGAGTGTGGATCGCTACCTGGCCATCGTTCACGCCGTGGCCGCCATGAGGGCCAGGACGCTGCGCTACGGAGCGCTGGCGAGCATCATCGTCTGGGTAGCGTCCATCAGCGCTGCTCTCCCTGAGGCCATCTTCGTAGCGGTGGTGAGGGAGAATGACGAGAACAGTGGTACAAGTTGCCAGCTGATTTACCCCGAGAACACAGAGAAGACATGGAAGTTGTTACGGAACTTTGGTGAAAACGGAGTGGGGCTCGTCCTATGTCTGCCCATAGTGGTCTTTTGTTACATCTGTATTCTCACTGTACTACAGAGGTTAAGGAACTCCAAAAAAGACAGGGCCATGAAACTGATATTCGCCATCGTGGGTGTGTTTGTGGTCTCCTGGGTCCCTTACAACGTTGTGGTTTTCCTCCAGACCCTTCAgatgtttgacattgggaataGCTGTGAGGCTTCAACACAGCTTGATACAGCTATGGAGGTGACAGAAACCATAGCGCTGGCTCACTGCTGTGTCAACCCAGTCATTTATGCTTTTGTAGGAGAGAAATTCAGAAAGTGTTTGGGCACTGTGCTCTCTAGATATCCACTGTGTAAAAAGCTTGGCAAACATGCAATGGTGAGCAGCAGAGGATCAGAAAACGAGACTTCTAACACACCTGTGTGATTGTACTGCTGAAAGACAATACTTCCACTGCTGAAAACCTGTTTGAtgcattttcattgacaaaaacaCTTCAGTTGGAAAGCAGCAAGTAGAGCAGAAGACCAATTTATGTGTCGTATGGAATAATGAAGTATTCTTCTGAACACAGACTTGCATATAAATGAAGTATAACTGTATAATATTtaactttaaatgtattttgatgaGCTCTGACTATTTGTTTAAGGGTGatgggctgttttttttttattacacatGTATGTATTACACACAAGCCTGCACACATTTTTTCTATAACATAATATCAATATGTTTTGCATAGAGATTATCTCAATTTCTATTCTTATTGTATGCACACGTTTTTGTTATAACATTAAAACACAACCAGGGGCAGGGTTGTGGCCAGATGACTGCTGCTGGATGGCCGGTGGCTATCTGGCTACTCATTGGCTACATTTGCTGGCCAAATATTATTTTGGTAGAATTTTGACCCTCCTTTGATTGAGGACCTGTTTTGGTATTAACTTGAACTCATCAAATCAGGAATTTGACCTTTTGAATTATTTTGAACTTTGTTGGCTGAGTAGGTATTTGTGTTCCTTTCGGGAGGGTTTTCTCAATAAATAAGCCTGTGCATTTTGTTGTACTGAAACATATT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557083.2 True 3132 mRNA 0.42 2 28706863 28714039

Neighbor

gene id symbol gene type direction distance location
LOC110485869 LOC106605412 coding downstream 706 28703683 ~ 28706157 (-)
LOC110534614 LOC106605399 coding downstream 173154 28475823 ~ 28533709 (-)
LOC110485830 LOC106605406 coding downstream 235369 28468401 ~ 28471494 (-)
g6f-like-a g6f-like-a coding downstream 305334 28377818 ~ 28401529 (-)
LOC110485762 LOC106605404 coding downstream 333319 28356399 ~ 28373544 (-)
LOC110485888 LOC106579893 coding upstream 1353 28715392 ~ 28718511 (-)
LOC110485998 LOC106605419 coding upstream 263790 28977829 ~ 29007911 (-)
trnat-ugu-28 NA coding upstream 297681 29011720 ~ 29011792 (-)
LOC110486042 LOC106605424 coding upstream 373378 29087417 ~ 29090611 (-)
LOC110486122 LOC106605427 coding upstream 746905 29460944 ~ 29470038 (-)
G129784 NA non-coding downstream 10862 28695765 ~ 28696001 (-)
G129778 NA non-coding downstream 16784 28689778 ~ 28690079 (-)
G129777 NA non-coding downstream 17213 28689184 ~ 28689650 (-)
G129776 LOC106579830 non-coding downstream 19253 28684374 ~ 28687610 (-)
G129773 LOC106579830 non-coding downstream 29370 28676025 ~ 28677493 (-)
G129799 NA non-coding upstream 7168 28721207 ~ 28721896 (-)
G129894 LOC106605415 non-coding upstream 141142 28855181 ~ 28860491 (-)
G129896 NA non-coding upstream 146795 28860834 ~ 28865634 (-)
G129904 LOC106605416 non-coding upstream 159453 28873492 ~ 28875218 (-)
G129907 NA non-coding upstream 163351 28877390 ~ 28888656 (-)
G129582 NA other downstream 396131 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 556877 27933389 ~ 28149986 (-)
G129250 NA other downstream 940331 27766157 ~ 27766532 (-)
LOC110485245 ubr5 other downstream 1428739 27231538 ~ 27278158 (-)
LOC110486376 LOC106605451 other upstream 1155007 29859575 ~ 29878744 (-)
c2h8orf37 cssa05h8orf37 other upstream 2175654 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 2182987 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 2478380 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 2483034 31196917 ~ 31199241 (-)

Expression


Co-expression Network