LOC110485888 (LOC106579893)


Basic Information

Item Value
gene id LOC110485888
gene name LOC106579893
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28715392 ~ 28718511 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557096.2
AATAAGTTCACAGTACCTCCTTCTAAGGGAGGTGAAGGAAACTGCAGCAGCAGTACTATAGGCTATTGTACAACAGGATAATACACACATCTTCAAGAGACTCAGAGAAGAAACACCAAagagctaattgatcattaatcATGCCTGACAAGGATATGGagccaacaacagaatataactATTCCTCCTACTACGATGATACAGAAGGTTTATATAGTTCAGAGCCCTGCAACAATGCCAATGTGAAGGAGTTTGGACGGGTGTTTCTGCCTACACTCTACAGCCTGGTCTTCATTGTGGGCTTCATCGGTAACGGCCTGGTGGTCTGTGTCCTGGTGGTGTTTAAGAGGATCAGAAGCATGACAGACCTCTGTCTCTTCAACCTGGCTCTGTCTGACCTTTTCTTCATCATCTCCCTGCCTTTCTGGTCCCACTACGCCACCGCAGCCAAGTGGCTCCTGGGGGACTTTATGTGCCGACTGGTAACCGGACTATACATGCTTGGGTTTTATGGCAGCATCTTCTTCATGGTGATCTTGACAGTGGATCGCTATGTGGTCATAGTCCACGCTCACACCCTGGCCAGGCCCAGATCAGTCAGAGTAGGGGTCACTCTGTCTCTGTTCATGTGGGCTCTCAGTCTCTGTGCCTCTCTGCCTACAATCATCTTCACCAAAGTAAATAATGAGTCTGGGCTTACAACATGTAAACCAGAGTATCCAGACGGTAGCATGTGGCGCCAGGTTTCTTATTTAGAGATGAATGTCTTGggtctacttctccctctctccgtcatgGTGATCTGCTATTCCAGAATCGTTCCGATGTTAGTCAATATCAAAACCACCAAAAAGCACAAAGCCATCAAACTGATAATCATCATAGTAGTGGTCTTTTTCTGCTTTTGGACCCCATACAATGTGGTCATTCTCCTGCGTTATCTGGAGACCCAGAGCTATTTTGGGGACTGTACGACTCACACGAACATAGATCTGGCAATGCAGTGGACAGAGGTGATAGCGTTCACACACTGTTGTTTGAATCCGATCATCTATGCCTTTGCAGGGCAGAAATTCATGAGTCTTGTCCTGAAGTTACTAAGAAAATGGATGCCAATGTGCTTCGCCAGGCCTTATGTTAGTGGGTTGTCTGAAAGAAATATCTCAGTCTATTCCAGGTCTTCTGAAATATCATCTACAAGACTGCTGTAGTTTGACTTGTATGCAGGCACACTTCGAATATAAAACTCTGAGAAGGGAAAAGACAGTAAAAGATGTAAGGAAAAGGGGGATTTCTTTGAAAGTGTGGCACTCAGTCACCCTAACTGTGAATCTATGCTTAcattagatactgtagatatcaGTTGCTCTTTTGTATCTTTACATGCTCCAATTCCTTTGTTGATAGATACCTTTAAAGAGTGTTAGTTGTGTCCTCATGTGGTATTGTGTGAAGTGCGAAAAAAAGTAAAGAAATTgacagtatgtacagtgcattcggaaagtattcagaccccttcccttttcccaaatgttgttacgttacagtcttattctaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K04179 CCR4, CD194; C-C chemokine receptor type 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557096.2 True 1559 mRNA 0.44 2 28715392 28718511

Neighbor

gene id symbol gene type direction distance location
LOC110485879 LOC106605413 coding downstream 1353 28706863 ~ 28714039 (-)
LOC110485869 LOC106605412 coding downstream 9235 28703683 ~ 28706157 (-)
LOC110534614 LOC106605399 coding downstream 181683 28475823 ~ 28533709 (-)
LOC110485830 LOC106605406 coding downstream 243898 28468401 ~ 28471494 (-)
g6f-like-a g6f-like-a coding downstream 313863 28377818 ~ 28401529 (-)
LOC110485998 LOC106605419 coding upstream 259318 28977829 ~ 29007911 (-)
trnat-ugu-28 NA coding upstream 293209 29011720 ~ 29011792 (-)
LOC110486042 LOC106605424 coding upstream 368906 29087417 ~ 29090611 (-)
LOC110486122 LOC106605427 coding upstream 742433 29460944 ~ 29470038 (-)
hjv LOC106605430 coding upstream 760183 29478694 ~ 29489250 (-)
G129784 NA non-coding downstream 19391 28695765 ~ 28696001 (-)
G129778 NA non-coding downstream 25313 28689778 ~ 28690079 (-)
G129777 NA non-coding downstream 25742 28689184 ~ 28689650 (-)
G129776 LOC106579830 non-coding downstream 27782 28684374 ~ 28687610 (-)
G129773 LOC106579830 non-coding downstream 37899 28676025 ~ 28677493 (-)
G129799 NA non-coding upstream 2696 28721207 ~ 28721896 (-)
G129894 LOC106605415 non-coding upstream 136670 28855181 ~ 28860491 (-)
G129896 NA non-coding upstream 142323 28860834 ~ 28865634 (-)
G129904 LOC106605416 non-coding upstream 154981 28873492 ~ 28875218 (-)
G129907 NA non-coding upstream 158879 28877390 ~ 28888656 (-)
G129582 NA other downstream 404660 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 565406 27933389 ~ 28149986 (-)
G129250 NA other downstream 948860 27766157 ~ 27766532 (-)
LOC110485245 ubr5 other downstream 1437268 27231538 ~ 27278158 (-)
LOC110486376 LOC106605451 other upstream 1150535 29859575 ~ 29878744 (-)
c2h8orf37 cssa05h8orf37 other upstream 2171182 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 2178515 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 2473908 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 2478562 31196917 ~ 31199241 (-)

Expression


Co-expression Network