LOC110485980 (LOC106605417)


Basic Information

Item Value
gene id LOC110485980
gene name LOC106605417
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28914821 ~ 28931101 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557254.2
GGAATGAGGAGCTGTATTCTTCAGATCACTTACTTATGCTCTGCTGCTTCCAGCTGACGAAGGAAGATCCACACTCACTCTGAGGAAATGGCATGCAAGTTTGGGACATATCTAGCTTTCTTCTTTCTCCTGGCAAGTCTGGCTGTCATCATTACAATATCCGTGATCCAGGGTCATAAGCGTGTCTTTGAGTCACGTCTGAAGTATGGCATAGTAATTGACTCAGGCTCCTCCCGCTCTACTGTGCATCTGTATCAATGGCCAGCCGAGAAGCAAAATAACACTGGAGTGGTGAGCCAGACACTCAGATGCATGGTCGCTGGCCCTGGTATCTCGGATATGTTAGTTGACAATGCACAGGACCAACAGTCCTGGGCGTCGATCCGAGAATGTATGAACAACATCACAAAAATCGTCCCCGCAGACCAACACAATTCAACCGTCCTCTACCTTGGGGCAACTGCTGGGATGAGACTGCTACATTCACAGAATGAAACCAAATCCAATGAGATCTTAAAGAACCTGCAGAACTACCTCCAATCCCTGCCGTTTAACTTCCAAAACGCCTCCATCATGTCAGGGAAAGAGGAAGGGCTGTACGGATGGATCACCGTCAACTACCTGCTGGGAAACTTCCTGGAGAGAAACATATGGAACATGTGGGTGCGTCCTGCCGGAGGGAAGATGGTGGGCTCCATGGATCTAGGAGGGGCGTCCACCCAGATAGCGTTCACCCTCCCAGATCCCAACGCCCAGGGAACAGACATTGTACGGGTCTCCCTCTATGGCTACGAATACAACATCTACACTCACAGCTTCCTGTGTTATGGGAAGAACGAGGCTGAGAAGAGAGTCCTCGCTGCTTTAGTGAAGAACTCTGAGAACGCTACACATGTGACCAACCCCTGCTTCAATCTTGGTTACAACATGACTGTGTCGGCTGAGTCCATCTTTGGGACTGAGTGCATAGAGACGCCTGCCGACTACGATCCCAACCAGATGATCACCCTGAAGGGGTCATCAGACAACGGAGCCTGTAGGGACGTGGTGAAATCCATATTTGACCTGACCTGCACAAAGAACTGTTCCTTTGACGCAGTCTACCAACCATCCGTGGGACCCGGGGACTttctgGCCTATGCTGGGTTCTTCTACACTGCTCAGGCTGTCGAGCTGAAAGGCATTTCACAACTGGACCAGTGGAACTCCTCTACCTGGGAATTCTGCTCCTGGGACTGGCCCACCctCAAGCTAAAAAAGGCCTGGATAGCTGAAAAATACAGAAAGTCCTACTGCTATTCAGCACATTACGTCCAGACATTACTTGTAAATGGCTACAAGTTCAATAAAGATACTTGGAAACACATTGACTTCCAAAAACAGgTACATAACACAAATATAGGCTGGAGTCTGGGCTACATGCTACATACATCCAACATGATCCCTGCTGAGGCCGAGCTGGTGCGTCTGCCCATGGCCAACTCTGTGTTCGgtggcctcctcttcctcttcaccgCCCTCACCATCGTCAGTGTCATGTTCCTGATCATCAAGGCTGTGCGCGCCTGCTACTGACCCCCACTAGAGGGCAGAGTGTTCAAATTACAGTTAAACCTAGAGTTacagtaactttcccaaaatgtgttttttccaGAAATCTGTtttggaagattcctggaatcaggaggaaatggaatcctccaaccaggatttctaaaAAACCTTgtaattttgggaaagttacagAATATGTACAGCAGCCCTAGTTAAACCCGATGGAGGAAAGTGCTTCTGGTCCCTCCCAGACACAGTTACAGCAGGCAACAATAGAACACTGACAGGTGCAAGGTATTATCACCAGATATTATCATCATCAGTTAAAGAGATTTAACAGGATCTTAAAGCCCACATAGAGTCTTATTCATTTGATTTTTAAGTCATATGTTTaataaatcactgtgtgtgtttatttcatgaaaataactccaaatatatttgttattatttatttagaGCTTCCTTTACAattgaaatgctcagtctgatcaTGTGGGTGTGTTGAtataaatgtaaatatatttacatacacagccctgattggcAAATAGGATCATCTAGACTCTAGACTAGAGCCTACCTTATACCTTCAAAGTAGGAGGATACATATGCTAATAAAAGTTGACTGGTCATTGATCAAAATAATCAGATGAGATTGTGATGTCATACTGTGGGCCAAACACTCCCTCCCAACCGAACAGTGTTGTTTTGACCTCATACTGAAAAACGGGAAATCACGTTTTGACTGCACTGCCTCTTTAAGCACTTACAAAtgcataacatattgtacaaattggaatttgtaataTATCATATTCATTGCAGGGGTACTTTCAAAAccactggctgaaattatacaaaacatAATAATGTATCTTAAGCTGTTTAAAGGATCTCTATTCCATgtgtttgtttgagtgttttcaGCGAGAAGATACACTTGAGGGTCAGTAATGCATTATAAGATCTTGTTCGCTGCTTTAGGCTCATCCCAAACAGACGAATGAGACAATTCTAAGATATTCAGTGACTTCAAATGCTCAATTGGTCTTTAAAGTAAAATAAAAGAGAAGTATTAATTGCATAATGAACTGCTGAGCAAAAATGATCGCCGTGTGCACTAAGTCATCGGCTATACAGTACTGAAGATCAGGAGGTTGAATGAAGGTTGAAGGTAGCATGGAAAACACCTGAAATGACTACAATCTCTTTATTACATATTTTGCTGGATGGCATGGCATTATCGGTTATGTGATCATCTACCTCCGAGATTTTGCATGTTTCTCGTCTGATGTACTATATCAGCAAATCTTTGTCATACAGTCATTTTTTTGTTGGTTGAATGTTCCATATTAACAATAAACTGAACATCACCTATGATGTTATCATC
>XM_036944479.1
CAGATCTCCTCATTCATTCAGAAAAAGACCAGGGGGGATGTATTGTTATCAGCAGGGAAATGGCATGCAAGTTTGGGACATATCTAGCTTTCTTCTTTCTCCTGGCAAGTCTGGCTGTCATCATTACAATATCCGTGATCCAGGGTCATAAGCGTGTCTTTGAGTCACGTCTGAAGTATGGCATAGTAATTGACTCAGGCTCCTCCCGCTCTACTGTGCATCTGTATCAATGGCCAGCCGAGAAGCAAAATAACACTGGAGTGGTGAGCCAGACACTCAGATGCATGGTCGCTGGCCCTGGTATCTCGGATATGTTAGTTGACAATGCACAGGACCAACAGTCCTGGGCGTCGATCCGAGAATGTATGAACAACATCACAAAAATCGTCCCCGCAGACCAACACAATTCAACCGTCCTCTACCTTGGGGCAACTGCTGGGATGAGACTGCTACATTCACAGAATGAAACCAAATCCAATGAGATCTTAAAGAACCTGCAGAACTACCTCCAATCCCTGCCGTTTAACTTCCAAAACGCCTCCATCATGTCAGGGAAAGAGGAAGGGCTGTACGGATGGATCACCGTCAACTACCTGCTGGGAAACTTCCTGGAGAGAAACATATGGAACATGTGGGTGCGTCCTGCCGGAGGGAAGATGGTGGGCTCCATGGATCTAGGAGGGGCGTCCACCCAGATAGCGTTCACCCTCCCAGATCCCAACGCCCAGGGAACAGACATTGTACGGGTCTCCCTCTATGGCTACGAATACAACATCTACACTCACAGCTTCCTGTGTTATGGGAAGAACGAGGCTGAGAAGAGAGTCCTCGCTGCTTTAGTGAAGAACTCTGAGAACGCTACACATGTGACCAACCCCTGCTTCAATCTTGGTTACAACATGACTGTGTCGGCTGAGTCCATCTTTGGGACTGAGTGCATAGAGACGCCTGCCGACTACGATCCCAACCAGATGATCACCCTGAAGGGGTCATCAGACAACGGAGCCTGTAGGGACGTGGTGAAATCCATATTTGACCTGACCTGCACAAAGAACTGTTCCTTTGACGCAGTCTACCAACCATCCGTGGGACCCGGGGACTttctgGCCTATGCTGGGTTCTTCTACACTGCTCAGGCTGTCGAGCTGAAAGGCATTTCACAACTGGACCAGTGGAACTCCTCTACCTGGGAATTCTGCTCCTGGGACTGGCCCACCctCAAGCTAAAAAAGGCCTGGATAGCTGAAAAATACAGAAAGTCCTACTGCTATTCAGCACATTACGTCCAGACATTACTTGTAAATGGCTACAAGTTCAATAAAGATACTTGGAAACACATTGACTTCCAAAAACAGgTACATAACACAAATATAGGCTGGAGTCTGGGCTACATGCTACATACATCCAACATGATCCCTGCTGAGGCCGAGCTGGTGCGTCTGCCCATGGCCAACTCTGTGTTCGgtggcctcctcttcctcttcaccgCCCTCACCATCGTCAGTGTCATGTTCCTGATCATCAAGGCTGTGCGCGCCTGCTACTGACCCCCACTAGAGGGCAGAGTGTTCAAATTACAGTTAAACCTAGAGTTacagtaactttcccaaaatgtgttttttccaGAAATCTGTtttggaagattcctggaatcaggaggaaatggaatcctccaaccaggatttctaaaAAACCTTgtaattttgggaaagttacagAATATGTACAGCAGCCCTAGTTAAACCCGATGGAGGAAAGTGCTTCTGGTCCCTCCCAGACACAGTTACAGCAGGCAACAATAGAACACTGACAGGTGCAAGGTATTATCACCAGATATTATCATCATCAGTTAAAGAGATTTAACAGGATCTTAAAGCCCACATAGAGTCTTATTCATTTGATTTTTAAGTCATATGTTTaataaatcactgtgtgtgtttatttcatgaaaataactccaaatatatttgttattatttatttagaGCTTCCTTTACAattgaaatgctcagtctgatcaTGTGGGTGTGTTGAtataaatgtaaatatatttacatacacagccctgattggcAAATAGGATCATCTAGACTCTAGACTAGAGCCTACCTTATACCTTCAAAGTAGGAGGATACATATGCTAATAAAAGTTGACTGGTCATTGATCAAAATAATCAGATGAGATTGTGATGTCATACTGTGGGCCAAACACTCCCTCCCAACCGAACAGTGTTGTTTTGACCTCATACTGAAAAACGGGAAATCACGTTTTGACTGCACTGCCTCTTTAAGCACTTACAAAtgcataacatattgtacaaattggaatttgtaataTATCATATTCATTGCAGGGGTACTTTCAAAAccactggctgaaattatacaaaacatAATAATGTATCTTAAGCTGTTTAAAGGATCTCTATTCCATgtgtttgtttgagtgttttcaGCGAGAAGATACACTTGAGGGTCAGTAATGCATTATAAGATCTTGTTCGCTGCTTTAGGCTCATCCCAAACAGACGAATGAGACAATTCTAAGATATTCAGTGACTTCAAATGCTCAATTGGTCTTTAAAGTAAAATAAAAGAGAAGTATTAATTGCATAATGAACTGCTGAGCAAAAATGATCGCCGTGTGCACTAAGTCATCGGCTATACAGTACTGAAGATCAGGAGGTTGAATGAAGGTTGAAGGTAGCATGGAAAACACCTGAAATGACTACAATCTCTTTATTACATATTTTGCTGGATGGCATGGCATTATCGGTTATGTGATCATCTACCTCCGAGATTTTGCATGTTTCTCGTCTGATGTACTATATCAGCAAATCTTTGTCATACAGTCATTTTTTTGTTGGTTGAATGTTCCATATTAACAATAAACTGAACATCACCTATGATGTTATCATC

Function

NR:

description
ectonucleoside triphosphate diphosphohydrolase 3-like

GO: NA

KEGG:

id description
K01510 ENTPD1_3_8, CD39; apyrase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557254.2 False 2947 mRNA 0.44 10 28914821 28931101
XM_036944479.1 True 2919 mRNA 0.43 10 28914914 28931101

Neighbor

gene id symbol gene type direction distance location
LOC110485968 LOC106605416 coding upstream 9275 28867302 ~ 28905546 (+)
LOC110485935 LOC106605415 coding upstream 49510 28783574 ~ 28865311 (+)
LOC110485894 LOC106605414 coding upstream 134274 28719936 ~ 28780547 (+)
LOC110485836 LOC106605411 coding upstream 227491 28537533 ~ 28687330 (+)
si:ch73-22o12.1 LOC106605406 coding upstream 445073 28399615 ~ 28469748 (+)
LOC110485990 LOC106579931 coding downstream 887 28931988 ~ 28951235 (+)
trnat-ugu-29 NA coding downstream 90318 29021419 ~ 29021491 (+)
LOC110486009 LOC106605422 coding downstream 107827 29038928 ~ 29054543 (+)
LOC110486020 LOC106605423 coding downstream 129487 29060588 ~ 29081536 (+)
LOC110486049 stea4 coding downstream 219776 29150877 ~ 29161809 (+)
G128813 NA non-coding upstream 63012 28851577 ~ 28851809 (+)
G128638 NA non-coding upstream 141239 28768219 ~ 28773582 (+)
G128760 LOC106579893 non-coding upstream 196086 28712992 ~ 28718735 (+)
G128747 NA non-coding upstream 220854 28693692 ~ 28693967 (+)
G129093 NA non-coding downstream 424371 29355472 ~ 29356526 (+)
G129099 NA non-coding downstream 435873 29366974 ~ 29367331 (+)
G129149 NA non-coding downstream 542181 29473282 ~ 29473490 (+)
G129151 NA non-coding downstream 543152 29474253 ~ 29474520 (+)
G129153 NA non-coding downstream 544671 29475772 ~ 29475990 (+)
G128490 NA other upstream 366906 28250842 ~ 28547915 (+)
G128436 NA other upstream 825376 28088647 ~ 28089445 (+)
G128185 NA other upstream 1197658 27716482 ~ 27717163 (+)
LOC110485466 LOC106605529 other upstream 1611266 27288172 ~ 27303644 (+)
G127644 LOC106605534 other upstream 1724228 27189991 ~ 27190593 (+)
G128853 LOC106605419 other downstream 8798 28939899 ~ 28981288 (+)
LOC110534631 LOC106580029 other downstream 546516 29424822 ~ 29478401 (+)
G129155 NA other downstream 553532 29484633 ~ 29485130 (+)
G130308 NA other downstream 668925 29600026 ~ 29641096 (+)

Expression


Co-expression Network