LOC110485990 (LOC106579931)



Basic Information


Item Value
gene id LOC110485990
gene name LOC106579931
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28931988 ~ 28951235 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021557264.2
CCAAATACCCATCTAGTCTCAGAAAGAGGACTTTTACTGTGAAATAAACTTTCCAAAACGCACGGGTCCCTCGGGAGTGAGGGCTGCTTTTGATATGCCTTTGCTCCACTTTGCGCTAAAGCAAAACTGTAGGTTGGGATTTCTTCTGGAGAAGTAGGCTACCACAAAAGTTTGAAGCCACTGAAACGTACTGGAGACTGCTTAAGTATTGTGATTTGCGAGATGTATTGTTACCTTTATTAATGCCAAGGTACCCTACAATAATGACAACCGCAATGTAGCCTGTAGATGGAGATGAAACATAGCTCAAAAGTGATAGTATATGGAAAAAGCATTGTGGAGGGGCTTGGAGACTTTATGTACGCTGCATCTTCAGAACCAATGCTGTCCAGTCTTCAATACAGTTTgtgtaaccatatctacatggTGTCACTGGACGTGTTTGCACTATAGTAAAGGCTGTAAACGTTCCTTGTGGAATGCACCCGGGTGGGGAAAACGATGGCCTTAAGAATGTGGTCCAAGGTCTGCTGCAAGAGGTGGGCAGTGTgggccttcctcctcctctttaccctgtctgtggtggtaatCAACACCCTCCCCTTCCCCCACTCTGAGACACGCAGGCTGCCCTCACGAGGCCTGAGCTCTGCTGGAGCTGGGGGGTATAGAGCGAGGGCAAGACCCAGGGAAAGGGCCACATTGgcccctcaccaccaccaccatcttccTCTACCCCTCAATGGTCACAGTGGAGGttggaagcagagtgacaaaATCAAAGAGTCCTCCAAGCATCACCTGGTGAAGGACCAGCCCAAACTGGATAGGAGAGCAGCTAGCATGACAGGTGAGAGAACTCACAGCAACTACAAGAAGAATGGTAAAACTAAGGGCATCGCCTCCAaaaggaaagagaagaaagagattCCGCCAAGTTCTATTAGAGACAAACAACATGATACCCCGCCATTGACAGTCAATGCTGTGCTAATAAGGCATGATGGAAGCCATCTAACCAACTGCAGTGGTTCAGAGCTCTCCACCCAACCACCATCTCTTCCCAGACAAGAGAACGTCCACCCAGCCGTGCCTCAAACTGTAGCTCGTAGCCATAGCCTCCCTTCTACTGCAGACCTCGGCCTGTCTGACTCTGAGCACAAATGTACTCCAGATGAACAGAGACAGGACCAGGGGCACACCGGGCAGGCAGGGAAGGCAGGGAGGAAGAACTTAACCAAGCAGCAGGCTGTGAAAAAGGTCCCCAGACAACTCAGGAAACGTGACAGACAGCCTTCGTGGCGTAAAGAGACCCGGCCCACAGCGGAAACAGCAGCAGAGgcagagaaagggagtgagggggGTGGCCATTGGTGTAAGATGTCAGCTGGAGAGAGGGAGTTTCCAGACACTGACACGCGGAGAATAAGGACTGAGGACACTGACTCTGTGCCATGGCTCAGCAAGGATGATATTCACAAGATGGAGTTCCTCTCGGGCAGTGAGGTTGTCAGTAAGGCCAGGGTCCCAGCCCACGGACAGGTCCTCCATGTAGGGCTGGGTGCCCCTCATCATCCCCCTTCTCTTGGGGCTCCATTGGCTGACCACAGTGGGCACTGCCAACAGGGTCTGTGTGCCCTGATCAAACGTCCAGACGACTGGTTTGAAGTCTTCGCTTTCCATTTAGACCGTGTTCTCGGCTTGAACAGGAGTCTGCCCACAGTGCTCAGGGACTTCCACAGTGACATCCTGCCTTATAAATACACCAGAGGGGCAGCCAGACCTGTGGTGTGGTGGGACCCAGGCATCCAGCACCTGGCTGATGATGACAATGACCAGAACTCGTTCCCTCTCACCTGGCCCCAGTACCAGAGCCTGCTGAGGGCCAGGTGTGGCAGTGGCAGCGGTGTGGCCCTCAACGAGACCCCCTGTGTGGGGGTTCACCATGCGGAGTGGGGGCGCCTGGCACTCTTTGACTTCCTCCTACAGGTCAATGATCGTCTGGACCGGTACTGCTGCGGTTTCCAGCCTGACCCAGCAGAACCATGTGTGGAGAACCTGCTACATACCAAATGCAGGAACTCAAAGGATCTAGTGCTGGTGCACATCCTGGTGAGGAAGGTAGAGCCTACCAGACTGGTGTTTATAGACAATGCAGGCAGGCCAAATCATCCCCATGACAACCTCAACTTCCGCTTAGTAGAGGGCATCGATGAGTTTCCAGAGAGAGCTGTATCAGTTCTCCAGTCTGGCTGTTTGGAGAGCATGCTCCTGAGCTCCCTGTATATGGACAAGCAATTCTGGGAGAGCCGAGGGGGGGCACGTGGCCTGAAACCTCTCATCCACACTGTTGAGCAGAGAGGGAGGATTCTGCTGCAGCACATCCACGACAAGAGACTGAGACTGAACAGGGATCTGTGAATCCAATGGCCCAGAAAGCACCCAGCAGTACATTCATTTCATCCAGGCAGGGGGTGCCTGTGACAGACGTGGAAGCCTCCTCAAGGTTCCGGGCAGCCTAAAGACACAggatgtgtctcaaatggcaccctattccctatatagtgcactacatatgacCACAGCCCTTCATTGTCTATAacaccctacgggccctggtcaaaggtaatgcactatatagggaatagggtgctcttTGGGCCACAGATACAGTATGCCTGTTCTATGCTGGTTGTGGTTCCCATCCATGTTGTATCCATACATCTTGTCAACATCCCTCAAGGCAAGCAAATTATGTTATTGTAATTGCACGGTCTTCTTCGCTGCCTGTTTATGAGGTGAGTTTTGTATTTTCGAATAAAAAATAGCAGATTTAACGATT
>TU148570
CCTCGGGAGTGAGGGCTGCTTTTGATATGCCTTTGCTCCACTTTGCGCTAAAGCAAAACTGTAGGTTGGGATTTCTTCTGGAGAAGTAGGCTACCACAAAAGTTTGAAGCCACTGAAACGTACTGGAGACTGCTTAAGTATTGTGATTTGCGAGATGTATTGTTACCTTTATTAATGCCAAGGTACCCTACAATAATGACAACCGCAATGTAGCCTGTAGATGGAGATGAAACATAGCTCAAAAGTGATAGTATATGGAAAAAGCATTGTGGAGGGGCTTGGAGACTTTATGTACGCTGCATCTTCAGAACCAATGCTGTCCAGTCTTCAATACAGTTTgtgtaaccatatctacatggTGTCACTGGACGTGTTTGCACTATAGTAAAGGCTGTAAACGTTCCTTGTGGAATGCACCCGGGTGGGGAAAACGATGGCCTTAAGAATGTGGTCCAAGGTCTGCTGCAAGAGGTGGGCAGTGTgggccttcctcctcctctttaccctgtctgtggtggtaatCAACACCCTCCCCTTCCCCCACTCTGAGACACGCAGGCTGCCCTCACGAGGCCTGAGCTCTGCTGGAGCTGGGGGGTATAGAGCGAGGGCAAGACCCAGGGAAAGGGCCACATTGgcccctcaccaccaccaccatcttccTCTACCCCTCAATGGTCACAGTGGAGGttggaagcagagtgacaaaATCAAAGAGTCCTCCAAGCATCACCTGGTGAAGGACCAGCCCAAACTGGATAGGAGAGCAGCTAGCATGACAGGTGAGAGAACTCACAGCAACTACAAGAAGAATGGTAAAACTAAGGGCATCGCCTCCAaaaggaaagagaagaaagagattCCGCCAAGTTCTATTAGAGACAAACAACATGATACCCCGCCATTGACAGTCAATGCTGTGCTAATAAGGCATGATGGAAGCCATCTAACCAACTGCAGTGGTTCAGAGCTCTCCACCCAACCACCATCTCTTCCCAGACAAGAGAACGTCCACCCAGCCGTGCCTCAAACTGTAGCTCGTAGCCATAGCCTCCCTTCTACTGCAGACCTCGGCCTGTCTGACTCTGAGCACAAATGTACTCCAGATGAACAGAGACAGGACCAGGGGCACACCGGGCAGGCAGGGAAGGCAGGGAGGAAGAACTTAACCAAGCAGCAGGCTGTGAAAAAGGTCCCCAGACAACTCAGGAAACGTGACAGACAGCCTTCGTGGCGTAAAGAGACCCGGCCCACAGCGGAAACAGCAGCAGAGgcagagaaagggagtgagggggGTGGCCATTGGTGTAAGATGTCAGCTGGAGAGAGGGAGTTTCCAGACACTGACACGCGGAGAATAAGGACTGAGGACACTGACTCTGTGCCATGGCTCAGCAAGGATGATATTCACAAGATGGAGTTCCTCTCGGGCAGTGAGGTTGTCAGTAAGGCCAGGGTCCCAGCCCACGGACAGGTCCTCCATGTAGGGCTGGGTGCCCCTCATCATCCCCCTTCTCTTGGGGCTCCATTGGCT

Function


NR:

description
protein FAM198A-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021557264.2 False 2842 mRNA 0.52 5 28931988 28951235
TU148570 True 1534 TUCP 0.43 2 28932056 28944390

Neighbor


gene id symbol gene type direction distance location
LOC110485980 LOC106605417 coding upstream 887 28914821 ~ 28931101 (+)
LOC110485968 LOC106605416 coding upstream 26442 28867302 ~ 28905546 (+)
LOC110485935 LOC106605415 coding upstream 66677 28783574 ~ 28865311 (+)
LOC110485894 LOC106605414 coding upstream 151441 28719936 ~ 28780547 (+)
LOC110485836 LOC106605411 coding upstream 244658 28537533 ~ 28687330 (+)
trnat-ugu-29 NA coding downstream 70184 29021419 ~ 29021491 (+)
LOC110486009 LOC106605422 coding downstream 87693 29038928 ~ 29054543 (+)
LOC110486020 LOC106605423 coding downstream 109353 29060588 ~ 29081536 (+)
LOC110486049 stea4 coding downstream 199642 29150877 ~ 29161809 (+)
LOC110486065 NA coding downstream 213563 29164798 ~ 29171119 (+)
G128813 NA non-coding upstream 80179 28851577 ~ 28851809 (+)
G128638 NA non-coding upstream 158406 28768219 ~ 28773582 (+)
G128760 LOC106579893 non-coding upstream 213253 28712992 ~ 28718735 (+)
G128747 NA non-coding upstream 238021 28693692 ~ 28693967 (+)
G129093 NA non-coding downstream 404237 29355472 ~ 29356526 (+)
G129099 NA non-coding downstream 415739 29366974 ~ 29367331 (+)
G129149 NA non-coding downstream 522047 29473282 ~ 29473490 (+)
G129151 NA non-coding downstream 523018 29474253 ~ 29474520 (+)
G129153 NA non-coding downstream 524537 29475772 ~ 29475990 (+)
G128490 NA other upstream 384073 28250842 ~ 28547915 (+)
G128436 NA other upstream 842543 28088647 ~ 28089445 (+)
G128185 NA other upstream 1214825 27716482 ~ 27717163 (+)
LOC110485466 LOC106605529 other upstream 1628433 27288172 ~ 27303644 (+)
G127644 LOC106605534 other upstream 1741395 27189991 ~ 27190593 (+)
LOC110534631 LOC106580029 other downstream 526382 29424822 ~ 29478401 (+)
G129155 NA other downstream 533398 29484633 ~ 29485130 (+)
G130308 NA other downstream 648791 29600026 ~ 29641096 (+)
LOC110486279 LOC106605442 other downstream 734732 29685855 ~ 29697686 (+)
G130414 NA other downstream 838341 29789576 ~ 29789831 (+)

Expression



Co-expression Network