LOC110485998 (LOC106605419)


Basic Information

Item Value
gene id LOC110485998
gene name LOC106605419
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28977829 ~ 29007911 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557276.2
TTTGGATATGGGATTTGACTTTGCAGTGGGTGGAGACAAGATAGCAAGTTGAATCGAAATCGCCTTTTTGACAGCtaacataaaaaaaatactgtGTAACTTTAAACTTGAATGAATGCGTTGGTATTTCGTACAGTTGCACCTACATTGAGGCATATCGTTAAGGAGGTTCATTCTATCACGTCAATCCTCTGGAAGGTTTCTGCGGAGAGTATGCTCTGGAGCTTGTAATGCTGCCTTAGCTGAAACGTTTCAGCTGCAGTGAAGAAAAGAAAATACCTTTCCGTTTTATCGAAACTCCCCGACATAACCAGGAAGGGAGTGGGATTTGAGGTTCCTGGAAAGCCTGTGCTTATCCACCAAGgtGTATCGGCGCCTGGCTAGCGGGAGTCGAAGCATGCGTGTGAGGTCAGAGATCAAATTGGACGTGGAGCTGTGATGCGTGCGGCGAGCTGCAGGATGAACGTGGCGGCGATACTGAATGGCCTGCTGGTGTCAGTGGTGGCAGCACTGCTCTGGAAGTACGTGAGGCTAAGCGAGCACGCTGCAGTACTGGAGGAGGAGCTGCAGCTGACCCGCCAGTCCCAGGAGTTGTCCCAGGCCCGGATAGACTACCACGCTGCTCTGCTGGCCCTCCAGGAGTATGGCACCCGTATGGTCTGCACCGGCAAGATGCACACTGATCGCATCTGCCGCTTCGACTACCTGTGCTACTGCACCGAGGCCGAAGAGTTTGTCTTCTTCCACAGCAACTCCTCCTTCATGCTGCCCAACCTGGGGCCCCGGCGATTCCAGCCGGCCCTGCTGGACCTGTCCTCTGTGGAGGATCACAACACCCAGTACTTCAACTTCCTGGAGCTGCCCGCAGCTGCCCTCAAGTTCATGCCCAAGCCTGTGTTCATCCCTGACGTCACCCTCATCCTCAACCGGTTCAATCCAGATAATCTGATGCATGTCTTCCACGATGACCTGCTGCCCATCTTCTACACCATGCAGCAGTACTCGGACCTGGATGATGAGGCCCGCCTGGTCTTCATGGAGGGCTGGGGTGAGGGCGCACACTTTGACCTCTACCGCCTGCTGAGCAGCAAGCAGCCACTTCTCAAAGAACAGCTGAAGAACTTTGGCAAACTTATGTGCTTCACAAAGTCCTATGTGGGCTTGTCCAAGATGACCACATGGTACCAGTACGGCTTTGTCCAGCCACAGGGCCCCAAAGCCAACATCCTGGTCTCTGGGAACGAGATCCGGCAGTTTTCCTCATCGCTGATGGAGAAGCTCAATATCACCAcgcgaggaggagaggagagcgcaGCGGAGGAAAAGGACGAGTACATCGTAGTGTTCAGTCGCTCCATCAACAGACTCATCCTGAATGAAGCGGAGCTGATCCTGGCGTTAGCGCAGGAGTTCCAGATGAGAGCGGTGACAGTGTCTCTGGAGGAGCAGACCTTCCCCAGTATCATCAAGGTCATCAGCGGGGCCTCCATATTGGTCAGCATGCACGGGGCCCAgctggtctcctctctcttcctctcccggGGGGCCGTCGTAGTAGAGCTCTTCCCCTATGCGGTCAACCCAGAGCAGTACACCCCTTACAAAACCCTAGCCTCTCTACCAGGCATGGACCTGCAGTATGTGGCCTGGAGGAACATGGTGGAGGAGAACTCTGTGGCCTACCCAGAGAGGCCCTGGGAGCAGGGAGGTATAGCCCACCTGGATAAGGAAGACCAGGAACACATCCTGGCCAGTAAGGAAGTGCCCAGACACCTGTGTTGCCGCaacccagagtggctctatcgCATCTACCAGGACACCATAGTGGACATCCCTTCTTTACTAGAGGCTCTCAGAGCGACAGTGAAAACCAGGCCCAATCTGAAGAAGGCCAAGCCTGCCAGCACGGTCCACCCAGGCCAGGTCAGAGAGCCCCAGTGCCAGACATCGGTCCAGGCCACCAACGAGGCCATGCTGACTGTGTCGTGGCAAATCCCCTGGAACCTGAAGTACCTGAAGGTCAGGGAAGTGAAGTACGAAGTGTGGATCCAGGAGCAAGGAGAGAACACGTACATGCCTTATATTCTCCCCCACCAGAACTATACCTTCTCTGAAAACATCAAACCATTTACGACGTACCTGGTGTGGGTGCGCTGCATCTTTAACAAAAACCTCCTGGGGCCCTTTGCAGATGTACTCACGTGCAGGACATAATTTGAGTTGATATTTACAGATGATCAGATGTTGGGGCTTTGgattattgaaggtgatgcaagaAAGGTtctgtataatttcagccagtagttttgaaagtagcgCTCACGAGACAAAATGGGTCCCAGAAAATGGTGCACAATTGTATACGACGTCATTCATTTTGTATGACATGTTACGTCCTGCACGATAAATGTATGTTTCCtgcaatatgttatgaatttgcaagtGCTTAAGATCTCGTTCAATCTCTTTTTAAAAGGAACTTCTGTGATTGAGGATTGTCTCCGATTTGAGGATAGTTGATATGATGTAATCTGTATCTAGGATGAGAGACTGTGCTGTTTGATGAGACAACCATGTCCTCACACAGAGCGTGAAATGCAGTAGAAATTCAATGGCATTTAGCATGGGACGAGGGAATACATGAGTCACGATTTAAGGATGCATTGTCTGTACCTGCAGAAAGTGCTACACAACATGTATTTTTGAGATATAGGAATTTCTTTAATATACTTATTTATGAGCAAAAATGTATAGTATAAATTCATGTATGTTTTTTTATTAGTCTTAAACACTGAACCTATCTATCTATACCTGTACTTATTTGAGTGTGTAATGTAGGTTTTCAGCAAAGCCCAGGTGGGACTTTAGGATGACTTGGTCTTGGTTTCATACTTGATTGGTTTGTGATTTGTTATACAGTTATCTGATAAATCACACCTTTGTGGCTTAGCCTACCCTCCTGCACAAAGTTGTAGCTTTGTCATGTTGCCTTTCTAATTGGCAATTTACATAATTGCAGAATGTTGCCAAaaccttaaagggatactgtGAGATTCTGGCAATtgtctacttacccagagtcaaaTGAACTCGTGGGTACCATATTTATGCCTCTGCgtgcagtatgaaggaagttagaagtagtttcgcgagccaatcctaactagcattagcacaatgactggaagtctatggataTCTGCTAGCTGGGTATCTGCTTCAGGCCTGGGAAATTCCAGTCCTCTGAgacctgattggtgtcacacttttccccCGATCCCTAGCAAACACATCTGATTTAAACTAATAGTTTTTTTAACTGAAGCTCATGATTAGTTGactattggagtcaggtgtgttagctggggcaaaagtgtgacaccaatcaggcccccgaggactggagttgcccaggctGCAGATACCCAtacacttccagtcattgtgctaacactaGTAGCgctagcaacttccttcaaaccacacacagagacataaaaagggtatctatgagttcatctgaccctgaggaagtagataaagggcttcattgccaaaatcccgaagtattcCTTTGAGAGAAACCAAAGTGAATTTGAAAATATGGTCACCAGTCTATAGTACCATTAAGTATGTGTTATTAGTTGTGATTTGGATTATCTTGTGCTTCATTGAGGCTTTAATATTTGCCATTAACTGTTTTGAACTATTGTGGCCCATGGATAATAAATTATTCCCCTTCTAGATTATTTGAGATATTAATTCAAGGCAGATAAAACTTTCAAAGAGTGTGTCCAGGAAAATATGTTGCCAGTTTTCTAAAGATGCTGACTAAAACATGCATTATTCATTCAAATGTAGTAGTCTTTTAAGAACAGGGTTCCTCTAAATGAAAATTAAGAGAATCTATTATCATGTATTTATGTCAAAGGTTCTGTTGCTGTGCGGTCACTAGATATGCAAGGGGTAGTTCTATTTCTTTCAGAAAAACTGGAGTTTCTTCAATCAGTTTCTTTGCCATTGCCCTGTGTGTCAAATGATAAATACAAAAAGGTTCATATCACTTCAGTGTCCCCATTACAGCAATTCTGAGTTCAATTGTCCTATTTTTTGTTATTCAGTCTACACATTTGCAGAAAATGATCAGAATTCCTTACTTACTATTAATGGGTACCATTTCTGATTGTGATCATTTACATTTTGCGCAGGTTATATGCATGCATAAACTTGACTATAATTAGCCTGTTATGCTTTTAATTTGAAA
>XM_021557284.2
TTTGGATATGGGATTTGACTTTGCAGTGGGTGGAGACAAGATAGCAAGTTGAATCGAAATCGCCTTTTTGACAGCtaacataaaaaaaatactgtGTAACTTTAAACTTGAATGAATGCGTTGGTATTTCGTACAGTTGCACCTACATTGAGGCATATCGTTAAGGAGGTTCATTCTATCACGTCAATCCTCTGGAAGGTTTCTGCGGAGAGTATGCTCTGGAGCTTGTAATGCTGCCTTAGCTGAAACGTTTCAGCTGCAGTGAAGAAAAGAAAATACCTTTCCGTTTTATCGAAACTCCCCGgtGTATCGGCGCCTGGCTAGCGGGAGTCGAAGCATGCGTGTGAGGTCAGAGATCAAATTGGACGTGGAGCTGTGATGCGTGCGGCGAGCTGCAGGATGAACGTGGCGGCGATACTGAATGGCCTGCTGGTGTCAGTGGTGGCAGCACTGCTCTGGAAGTACGTGAGGCTAAGCGAGCACGCTGCAGTACTGGAGGAGGAGCTGCAGCTGACCCGCCAGTCCCAGGAGTTGTCCCAGGCCCGGATAGACTACCACGCTGCTCTGCTGGCCCTCCAGGAGTATGGCACCCGTATGGTCTGCACCGGCAAGATGCACACTGATCGCATCTGCCGCTTCGACTACCTGTGCTACTGCACCGAGGCCGAAGAGTTTGTCTTCTTCCACAGCAACTCCTCCTTCATGCTGCCCAACCTGGGGCCCCGGCGATTCCAGCCGGCCCTGCTGGACCTGTCCTCTGTGGAGGATCACAACACCCAGTACTTCAACTTCCTGGAGCTGCCCGCAGCTGCCCTCAAGTTCATGCCCAAGCCTGTGTTCATCCCTGACGTCACCCTCATCCTCAACCGGTTCAATCCAGATAATCTGATGCATGTCTTCCACGATGACCTGCTGCCCATCTTCTACACCATGCAGCAGTACTCGGACCTGGATGATGAGGCCCGCCTGGTCTTCATGGAGGGCTGGGGTGAGGGCGCACACTTTGACCTCTACCGCCTGCTGAGCAGCAAGCAGCCACTTCTCAAAGAACAGCTGAAGAACTTTGGCAAACTTATGTGCTTCACAAAGTCCTATGTGGGCTTGTCCAAGATGACCACATGGTACCAGTACGGCTTTGTCCAGCCACAGGGCCCCAAAGCCAACATCCTGGTCTCTGGGAACGAGATCCGGCAGTTTTCCTCATCGCTGATGGAGAAGCTCAATATCACCAcgcgaggaggagaggagagcgcaGCGGAGGAAAAGGACGAGTACATCGTAGTGTTCAGTCGCTCCATCAACAGACTCATCCTGAATGAAGCGGAGCTGATCCTGGCGTTAGCGCAGGAGTTCCAGATGAGAGCGGTGACAGTGTCTCTGGAGGAGCAGACCTTCCCCAGTATCATCAAGGTCATCAGCGGGGCCTCCATATTGGTCAGCATGCACGGGGCCCAgctggtctcctctctcttcctctcccggGGGGCCGTCGTAGTAGAGCTCTTCCCCTATGCGGTCAACCCAGAGCAGTACACCCCTTACAAAACCCTAGCCTCTCTACCAGGCATGGACCTGCAGTATGTGGCCTGGAGGAACATGGTGGAGGAGAACTCTGTGGCCTACCCAGAGAGGCCCTGGGAGCAGGGAGGTATAGCCCACCTGGATAAGGAAGACCAGGAACACATCCTGGCCAGTAAGGAAGTGCCCAGACACCTGTGTTGCCGCaacccagagtggctctatcgCATCTACCAGGACACCATAGTGGACATCCCTTCTTTACTAGAGGCTCTCAGAGCGACAGTGAAAACCAGGCCCAATCTGAAGAAGGCCAAGCCTGCCAGCACGGTCCACCCAGGCCAGGTCAGAGAGCCCCAGTGCCAGACATCGGTCCAGGCCACCAACGAGGCCATGCTGACTGTGTCGTGGCAAATCCCCTGGAACCTGAAGTACCTGAAGGTCAGGGAAGTGAAGTACGAAGTGTGGATCCAGGAGCAAGGAGAGAACACGTACATGCCTTATATTCTCCCCCACCAGAACTATACCTTCTCTGAAAACATCAAACCATTTACGACGTACCTGGTGTGGGTGCGCTGCATCTTTAACAAAAACCTCCTGGGGCCCTTTGCAGATGTACTCACGTGCAGGACATAATTTGAGTTGATATTTACAGATGATCAGATGTTGGGGCTTTGgattattgaaggtgatgcaagaAAGGTtctgtataatttcagccagtagttttgaaagtagcgCTCACGAGACAAAATGGGTCCCAGAAAATGGTGCACAATTGTATACGACGTCATTCATTTTGTATGACATGTTACGTCCTGCACGATAAATGTATGTTTCCtgcaatatgttatgaatttgcaagtGCTTAAGATCTCGTTCAATCTCTTTTTAAAAGGAACTTCTGTGATTGAGGATTGTCTCCGATTTGAGGATAGTTGATATGATGTAATCTGTATCTAGGATGAGAGACTGTGCTGTTTGATGAGACAACCATGTCCTCACACAGAGCGTGAAATGCAGTAGAAATTCAATGGCATTTAGCATGGGACGAGGGAATACATGAGTCACGATTTAAGGATGCATTGTCTGTACCTGCAGAAAGTGCTACACAACATGTATTTTTGAGATATAGGAATTTCTTTAATATACTTATTTATGAGCAAAAATGTATAGTATAAATTCATGTATGTTTTTTTATTAGTCTTAAACACTGAACCTATCTATCTATACCTGTACTTATTTGAGTGTGTAATGTAGGTTTTCAGCAAAGCCCAGGTGGGACTTTAGGATGACTTGGTCTTGGTTTCATACTTGATTGGTTTGTGATTTGTTATACAGTTATCTGATAAATCACACCTTTGTGGCTTAGCCTACCCTCCTGCACAAAGTTGTAGCTTTGTCATGTTGCCTTTCTAATTGGCAATTTACATAATTGCAGAATGTTGCCAAaaccttaaagggatactgtGAGATTCTGGCAATtgtctacttacccagagtcaaaTGAACTCGTGGGTACCATATTTATGCCTCTGCgtgcagtatgaaggaagttagaagtagtttcgcgagccaatcctaactagcattagcacaatgactggaagtctatggataTCTGCTAGCTGGGTATCTGCTTCAGGCCTGGGAAATTCCAGTCCTCTGAgacctgattggtgtcacacttttccccCGATCCCTAGCAAACACATCTGATTTAAACTAATAGTTTTTTTAACTGAAGCTCATGATTAGTTGactattggagtcaggtgtgttagctggggcaaaagtgtgacaccaatcaggcccccgaggactggagttgcccaggctGCAGATACCCAtacacttccagtcattgtgctaacactaGTAGCgctagcaacttccttcaaaccacacacagagacataaaaagggtatctatgagttcatctgaccctgaggaagtagataaagggcttcattgccaaaatcccgaagtattcCTTTGAGAGAAACCAAAGTGAATTTGAAAATATGGTCACCAGTCTATAGTACCATTAAGTATGTGTTATTAGTTGTGATTTGGATTATCTTGTGCTTCATTGAGGCTTTAATATTTGCCATTAACTGTTTTGAACTATTGTGGCCCATGGATAATAAATTATTCCCCTTCTAGATTATTTGAGATATTAATTCAAGGCAGATAAAACTTTCAAAGAGTGTGTCCAGGAAAATATGTTGCCAGTTTTCTAAAGATGCTGACTAAAACATGCATTATTCATTCAAATGTAGTAGTCTTTTAAGAACAGGGTTCCTCTAAATGAAAATTAAGAGAATCTATTATCATGTATTTATGTCAAAGGTTCTGTTGCTGTGCGGTCACTAGATATGCAAGGGGTAGTTCTATTTCTTTCAGAAAAACTGGAGTTTCTTCAATCAGTTTCTTTGCCATTGCCCTGTGTGTCAAATGATAAATACAAAAAGGTTCATATCACTTCAGTGTCCCCATTACAGCAATTCTGAGTTCAATTGTCCTATTTTTTGTTATTCAGTCTACACATTTGCAGAAAATGATCAGAATTCCTTACTTACTATTAATGGGTACCATTTCTGATTGTGATCATTTACATTTTGCGCAGGTTATATGCATGCATAAACTTGACTATAATTAGCCTGTTATGCTTTTAATTTGAAA

Function

NR:

description
protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2-like

GO: NA

KEGG:

id description
K18207 POMGNT2, GTDC2; protein O-mannose beta-1,4-N-acetylglucosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557276.2 False 4264 mRNA 0.46 3 28977829 29007911
XM_021557284.2 True 4204 mRNA 0.46 2 28977829 29007911

Neighbor

gene id symbol gene type direction distance location
LOC110485888 LOC106579893 coding downstream 259318 28715392 ~ 28718511 (-)
LOC110485879 LOC106605413 coding downstream 263790 28706863 ~ 28714039 (-)
LOC110485869 LOC106605412 coding downstream 271672 28703683 ~ 28706157 (-)
LOC110534614 LOC106605399 coding downstream 444120 28475823 ~ 28533709 (-)
LOC110485830 LOC106605406 coding downstream 506335 28468401 ~ 28471494 (-)
trnat-ugu-28 NA coding upstream 3809 29011720 ~ 29011792 (-)
LOC110486042 LOC106605424 coding upstream 79506 29087417 ~ 29090611 (-)
LOC110486122 LOC106605427 coding upstream 453033 29460944 ~ 29470038 (-)
hjv LOC106605430 coding upstream 470783 29478694 ~ 29489250 (-)
LOC110486192 LOC106605431 coding upstream 488956 29496867 ~ 29512154 (-)
G129882 NA non-coding downstream 41751 28904041 ~ 28936078 (-)
G129907 NA non-coding downstream 89173 28877390 ~ 28888656 (-)
G129904 LOC106605416 non-coding downstream 102611 28873492 ~ 28875218 (-)
G129896 NA non-coding downstream 112195 28860834 ~ 28865634 (-)
G129894 LOC106605415 non-coding downstream 117338 28855181 ~ 28860491 (-)
G130025 NA non-coding upstream 109976 29117887 ~ 29185848 (-)
G130027 NA non-coding upstream 142392 29150303 ~ 29172644 (-)
G130028 stea4 non-coding upstream 152803 29160714 ~ 29196616 (-)
G130158 NA non-coding upstream 340297 29348208 ~ 29348648 (-)
G130174 NA non-coding upstream 365248 29373159 ~ 29373728 (-)
G129582 NA other downstream 667097 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 827843 27933389 ~ 28149986 (-)
G129250 NA other downstream 1211297 27766157 ~ 27766532 (-)
LOC110485245 ubr5 other downstream 1699705 27231538 ~ 27278158 (-)
LOC110486376 LOC106605451 other upstream 861135 29859575 ~ 29878744 (-)
c2h8orf37 cssa05h8orf37 other upstream 1881782 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 1889115 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 2184508 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 2189162 31196917 ~ 31199241 (-)

Expression


Co-expression Network