LOC110486009 (LOC106605422)


Basic Information

Item Value
gene id LOC110486009
gene name LOC106605422
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29038928 ~ 29054543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557298.2
GACCAATCGCAGCTTCATCCGACAATCATGTGACACCGGTATCTTTGATGAGGTCATTTTCATGCGACTATTGCTGACAGCTCCATGTGAATGTCGCCTTTGTCCACTAGCTATTTAGCTTATTTATCAAGGTGTTAGCATGGTGACTCTGGCTGCTCTGTTGTGAATAGGATTCTCGCTGCTCTCTCTGGTCTCGTGCTGCTCTCTCTGGTCTCGTGCTGCTCTCTCTGGTCTCGTGCTGCACTCTATTCCTCCATGACCAGCCGTCTGCTGGGCCGATGTGCCCGTCTCCTCCCCAGGGCCACCCCCCAGGCCTCAGCCACCACTGCCTTCCTGCCTACCCCTGCAACTGGGCCAGCAGAACCGCTGTGGGCACAGGCCTGGGGGCAGCCTGTGGTAAAGGGGCTATGTGATGGCAGGAGTTCGTTCAAAGAGGAGTATCCCATCGAGCCCAAACGCACCCAGCTAGATGAGCTCTTGGAGAGGGCCCAATCTCCACAGGATGTCCTGCAGGCGTGGGCGGCACAAGGAGGAAAGGCCAATCAGGCGGCTAAGACTCTGGTTCAGCTTGTCAGATTGGctgggagagagaaaggtggggcTAAAATGGACCAATTTGAGCTGCTGAATGATCCCAGACTGCTGGACATAATGGACACAGTTACTGCACAGGTAGCGTCAGTGTGGAATGGTACGCTGGTCTCTCTTCTGCGCTCCCTCTCTACTCTGGGTGTTCCTCCTACAGCTGCAGTACAACGCTCCATCCAGACAGAGGTGCTGTGGCGTGTACGCAGACTCTCCTACAAACAGCTGGCTTTCCTGGCAGACTGGGGAGCAGGGCGGAATGGTCAGATGGAGGTGTTGCTGGTGAGCGCAGCGCTGAAACAGCTGGAGCTCCGCTGGACTGAGATCGCTGACGCCAGAACAGTCAGTACCCTGATGGCTAGGGCTGGACACCTCAGTCCTGCACTGATGGACAGACTGGAGGATAAGGCGTTAGAGCTAGCTGAAGGGTTTGGGGCCGAGGATATccgcagggtgtgtgtgtctctggcgTCTCAGGGACGCCGGTCAGTGCCTCTGCTCAGAGCTCTGTCCTACCACTTCCTACAGAAACCCTCAACAGACCTTACCACACCGCTACTGTTGGACCTTGCCTACGCTTATGggaagTTGAATTTCCACCACTCCCAGGTCTTCCAGCGATTGGCAGCCGAGTTGTTACCCAGAATGCCAGAGATTAGTTCTGCCGATGTCACTCGCTGCGCCAAATCCCTAGCCTTCCTCAAGTGGCTCCATCTCCCATTGTTTGAGGCATTCGCTGAGCACTACAGCGTGAACAGTCAGAAGTACAGCACACTGCAGCTTTGTAACCTGCTCATGTCATTGGCCAGGCTCAACTTCCAGCCCAGCAAAGGGGAGGAGTTCTACAAGAAGGTCCACTCTGCCCTGGAGGGTGTTCTCCCCAGCCTGGAGGCGTTCCTGCAGACAGACGTGGtgtggtctctgtgtgtgttacagcaggcCAAGCCCCACCACATCACGGCCCTCACTCAACACACACATGTTGCTAAACTCTCAGAAGGCAGTCTGTCTCGAGTGGAGAACTATCGCCTGAAGCTCCTCCACATCATTGCTACCCTCCAGTTAGAACACCCAGAGTCTCTGTCCTCCACCCTGCCTACAGAGGCCATGTTGCTTCCCTCCACCCTGGGCCGggactcccccctctcccctctacagACTGGGCTGAAGGGGGCCCTGGGTAATCTGGTGGGGGGGAATTCAGAGGCCCTACGTACCGGGGTCAACACTATATATGGCTGGACCATAGATGGAGAGCTGGTGGTGGACAGTGAAAATAAGCCAATGGACCTGGTGACCCTGACGGCCCCTCACCTGCCTGGAGGAGGCGGAGCCAAGTCCTTACCTGAGGGGGCATGCAGGTTAGCATTCCTAACCTGGGAGTTTCCTAACTATGGCTCCAGGAGTAAAGATCTGCTGGGACGATTCACCATGATGAGACGGCATCTCAAACTGGCTGGCTTTATCCTTgtagaggTGCCATACTATGAGTGGCTGGAGCTGAAGTCTGATTGGCAGAAAGGGGCGTATGTGAAGGATAAGATGGGGAAGGCCATTGCTGAGGAAATGGCGAAGTGAACGAGGCCAAACAGCAGAAGTCTGGTTCAGTTCTAGACTCAACTGGACTGGAAAGAGGAGAGCCAGGATGGCTCACCAGAAACAATCTGGTCTCAAACAACTCTGAacagcaaccacacacacacacacacacactaatcaacCCACTCTAAAACAAGCCACTTGGTGGAAAATCTCTTTTGCCGTTTTATCTTTGGTTGCCTTGCCGATGCGTGGGGCTTTCCTTGTTACCATGGAGACGCCCCCTGAGAGTTCTGTATGCTGAAGAGAgcaaacagagggagaaagagagagtgggccCTACAGCAGAAAGCAAGGGAGGAAAGACCTCTGTTGCTAAGGATATGTGTCCCTAAGTGACACTCAAAGAGAATAGAGAGCAGCATCATAGAATAAATGCCCCAATGAATGTTAAAAGCTGTTTATCACCTGTGAATAGAGTGGTCTAATTAAATTATCAATATGAGCTTTGAGTGATATGATTGAAGAAATGATTTTATGCTTTCATTTTGATATACATGTTCCACACACTGTCTTCCATGTTGGCACTGATGTTCCTTGATTAACATTGGCTGTAGATGAGAGCATCAAATCCGTGATCCATTGTGGGCCAATTGTGATCTACAACTAACAATAAGTcattatttatgatgcaaggttatttgtagatcagtcagacATCATCTATGGCTCTGGTAGGTCTTGACTTCCCTCACAGTGTGTTTAGAGAGGACATTGGGTTGGATGAGCTTCTATGGTATCATTGGCATCCTGATGGAGGTGTGATATTCAGCCTGAGGATGCTTCTCTTCACAAGTTACAGCTAATAATACGTATTTATTATCAAACGTCATGGGTCAGcggcgtgtgtgtgttgtggggtgTGCTGAATGTATCCAAGAGGGATCGGCTCACACACAGCTGTTTATGTTGTCTGTGCcgcacagtgccttcagaaagtattcataccccttgacttaatttacattttgttgttacagcctgaattcaataaaaacatgtttacccatcta
>XM_021557306.2
GACCAATCGCAGCTTCATCCGACAATCATGTGACACCGGTATCTTTGATGAGGTCATTTTCATGCGACTATTGCTGACAGCTCCATGTGAATGTCGCCTTTGTCCACTAGCTATTTAGCTTATTTATCAAGGTGTTAGCATGGTGACTCTGGCTGCTCTGTTGTGAATAGGATTCTCGCTGCTCTCTCTGGTCTCGTGCTGCTCTCTCTGGTCTCGTGCTGCTCTCTCTGGTCTCGTGCTGCACTCTATTCCTCCATGACCAGCCGTCTGCTGGGCCGATGTGCCCGTCTCCTCCCCAGGGCCACCCCCCAGGCCTCAGCCACCACTGCCTTCCTGCCTACCCCTGCAACTGGGCCAGCAGAACCGCTGTGGGCACAGGCCTGGGGGCAGCCTGTGGTAAAGGGGCTATGTGATGGCAGGAGTTCGTTCAAAGAGGAGTATCCCATCGAGCCCAAACGCACCCAGCTAGATGAGCTCTTGGAGAGGGCCCAATCTCCACAGGATGTCCTGCAGGCGTGGGCGGCACAAGGAGGAAAGGCCAATCAGGCGGCTAAGACTCTGGTTCAGCTTGTCAGATTGGctgggagagagaaaggtggggcTAAAATGGACCAATTTGAGCTGCTGAATGATCCCAGACTGCTGGACATAATGGACACAGTTACTGCACAGGTAGCGTCAGTGTGGAATGGTACGCTGGTCTCTCTTCTGCGCTCCCTCTCTACTCTGGGTGTTCCTCCTACAGCTGCAGTACAACGCTCCATCCAGACAGAGGTGCTGTGGCGTGTACGCAGACTCTCCTACAAACAGCTGGCTTTCCTGGCAGACTGGGGAGCAGGGCGGAATGGTCAGATGGAGGTGTTGCTGGTGAGCGCAGCGCTGAAACAGCTGGAGCTCCGCTGGACTGAGATCGCTGACGCCAGAACAGTCAGTACCCTGATGGCTAGGGCTGGACACCTCAGTCCTGCACTGATGGACAGACTGGAGGATAAGGCGTTAGAGCTAGCTGAAGGGTTTGGGGCCGAGGATATccgcagggtgtgtgtgtctctggcgTCTCAGGGACGCCGGTCAGTGCCTCTGCTCAGAGCTCTGTCCTACCACTTCCTACAGAAACCCTCAACAGACCTTACCACACCGCTACTGTTGGACCTTGCCTACGCTTATGggaagTTGAATTTCCACCACTCCCAGGTCTTCCAGCGATTGGCAGCCGAGTTGTTACCCAGAATGCCAGAGATTAGTTCTGCCGATGTCACTCGCTGCGCCAAATCCCTAGCCTTCCTCAAGTGGCTCCATCTCCCATTGTTTGAGGCATTCGCTGAGCACTACAGCGTGAACAGTCAGAAGTACAGCACACTGCAGCTTTGTAACCTGCTCATGTCATTGGCCAGGCTCAACTTCCAGCCCAGCAAAGGGGAGGAGTTCTACAAGAAGGTCCACTCTGCCCTGGAGGGTGTTCTCCCCAGCCTGGAGGCGTTCCTGCAGACAGACGTGGtgtggtctctgtgtgtgttacagcaggcCAAGCCCCACCACATCACGGCCCTCACTCAACACACACATGTTGCTAAACTCTCAGAAGGCAGTCTGTCTCGAGTGGAGAACTATCGCCTGAAGCTCCTCCACATCATTGCTACCCTCCAGTTAGAACACCCAGAGTCTCTGTCCTCCACCCTGCCTACAGAGGCCATGTTGCTTCCCTCCACCCTGGGCCGggactcccccctctcccctctacagACTGGGCTGAAGGGGGCCCTGGGTAATCTGGTGGGGGGGAATTCAGAGGCCCTACGTACCGGGGTCAACACTATATATGGCTGGACCATAGATGGAGAGCTGGTGGTGGACAGTGAAAATAAGCCAATGGACCTGGTGACCCTGACGGCCCCTCACCTGCCTGGAGGAGGCGGAGCCAAGTCCTTACCTGAGGGGGCATGCAGGTTAGCATTCCTAACCTGGGAGTTTCCTAACTATGGCTCCAGGAGTAAAGATCTGCTGGGACGATTCACCATGATGAGACGGCATCTCAAACTGGCTGGCTTTATCCTTgtagaggTGCCATACTATGAGTGGCTGGAGCTGAAGTCTGATTGGCAGAAAGGGGCGTATGTGAAGGATAAGATGGGGAAGGCCATTGCTGAGGAAATGGCGAAGTGAACGAGGCCAAACAGCAGAAGTGAGGAGAGCCAGGATGGCTCACCAGAAACAATCTGGTCTCAAACAACTCTGAacagcaaccacacacacacacacacacactaatcaacCCACTCTAAAACAAGCCACTTGGTGGAAAATCTCTTTTGCCGTTTTATCTTTGGTTGCCTTGCCGATGCGTGGGGCTTTCCTTGTTACCATGGAGACGCCCCCTGAGAGTTCTGTATGCTGAAGAGAgcaaacagagggagaaagagagagtgggccCTACAGCAGAAAGCAAGGGAGGAAAGACCTCTGTTGCTAAGGATATGTGTCCCTAAGTGACACTCAAAGAGAATAGAGAGCAGCATCATAGAATAAATGCCCCAATGAATGTTAAAAGCTGTTTATCACCTGTGAATAGAGTGGTCTAATTAAATTATCAATATGAGCTTTGAGTGATATGATTGAAGAAATGATTTTATGCTTTCATTTTGATATACATGTTCCACACACTGTCTTCCATGTTGGCACTGATGTTCCTTGATTAACATTGGCTGTAGATGAGAGCATCAAATCCGTGATCCATTGTGGGCCAATTGTGATCTACAACTAACAATAAGTcattatttatgatgcaaggttatttgtagatcagtcagacATCATCTATGGCTCTGGTAGGTCTTGACTTCCCTCACAGTGTGTTTAGAGAGGACATTGGGTTGGATGAGCTTCTATGGTATCATTGGCATCCTGATGGAGGTGTGATATTCAGCCTGAGGATGCTTCTCTTCACAAGTTACAGCTAATAATACGTATTTATTATCAAACGTCATGGGTCAGcggcgtgtgtgtgttgtggggtgTGCTGAATGTATCCAAGAGGGATCGGCTCACACACAGCTGTTTATGTTGTCTGTGCcgcacagtgccttcagaaagtattcataccccttgacttaatttacattttgttgttacagcctgaattcaataaaaacatgtttacccatcta

Function

NR:

description
protein TBRG4-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0004672 protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557298.2 False 3197 mRNA 0.52 11 29038928 29054543
XM_021557306.2 True 3164 mRNA 0.52 12 29038928 29054543

Neighbor

gene id symbol gene type direction distance location
trnat-ugu-29 NA coding upstream 17437 29021419 ~ 29021491 (+)
LOC110485990 LOC106579931 coding upstream 87693 28931988 ~ 28951235 (+)
LOC110485980 LOC106605417 coding upstream 107827 28914821 ~ 28931101 (+)
LOC110485968 LOC106605416 coding upstream 133382 28867302 ~ 28905546 (+)
LOC110485935 LOC106605415 coding upstream 173617 28783574 ~ 28865311 (+)
LOC110486020 LOC106605423 coding downstream 6045 29060588 ~ 29081536 (+)
LOC110486049 stea4 coding downstream 96334 29150877 ~ 29161809 (+)
LOC110486065 NA coding downstream 110255 29164798 ~ 29171119 (+)
LOC100136336 stea4 coding downstream 117555 29172098 ~ 29196640 (+)
LOC118937130 NA coding downstream 177035 29231578 ~ 29232721 (+)
G128813 NA non-coding upstream 187119 28851577 ~ 28851809 (+)
G128638 NA non-coding upstream 265346 28768219 ~ 28773582 (+)
G128760 LOC106579893 non-coding upstream 320193 28712992 ~ 28718735 (+)
G128747 NA non-coding upstream 344961 28693692 ~ 28693967 (+)
G129093 NA non-coding downstream 300929 29355472 ~ 29356526 (+)
G129099 NA non-coding downstream 312431 29366974 ~ 29367331 (+)
G129149 NA non-coding downstream 418739 29473282 ~ 29473490 (+)
G129151 NA non-coding downstream 419710 29474253 ~ 29474520 (+)
G129153 NA non-coding downstream 421229 29475772 ~ 29475990 (+)
G128853 LOC106605419 other upstream 57640 28939899 ~ 28981288 (+)
G128490 NA other upstream 491013 28250842 ~ 28547915 (+)
G128436 NA other upstream 949483 28088647 ~ 28089445 (+)
G128185 NA other upstream 1321765 27716482 ~ 27717163 (+)
LOC110534631 LOC106580029 other downstream 423074 29424822 ~ 29478401 (+)
G129155 NA other downstream 430090 29484633 ~ 29485130 (+)
G130308 NA other downstream 545483 29600026 ~ 29641096 (+)
LOC110486279 LOC106605442 other downstream 631424 29685855 ~ 29697686 (+)
G130414 NA other downstream 735033 29789576 ~ 29789831 (+)

Expression


Co-expression Network