LOC110486042 (LOC106605424)


Basic Information

Item Value
gene id LOC110486042
gene name LOC106605424
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29087417 ~ 29090611 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557357.2
gagagagagagagagagagagagagagagagagagaatattatGTGTGTGGCCAAGGAAAAGGCAGGGTGTGTTAGTGTGAGAGAGGACAGAAGCAAAAGATTTGAGAAAGACTAGTTTACTAGAGGGAGAAGtgtgagcaagaggacaagaggTTACAAAGAAAAATAGGAatacagaaagggagagagggacagaaactaAGTCATAGCAGCTGCTTCAGACCATCAGAGGACTGAGCCAAAGGGAACAGGAGAGAGTTTCTGCGCCATGGGCAAATCAGCTTCTAAGCAGTTTTCGGGGGAGGTGTTGCGGAGTCATAACGAGTATCGTAGGAAGCACCAGGCGCCCCCTCTGAAGCTGAGCAGCAAGCTGAGTAGAGATGCCACTAGGTATGCTGAGTCTCTGGCCAGCACACGGATCCTGAAGCACAGTGTTGAGTCCAGTAAGGGGAGCTGTGGCGAGAACCTGGCCTGGGCCTCCTATgaccaaccagGGAAGGATGTGGCCGACCGCTGGTATGACGAGGTAAAACAATACAACTTCAACCGCCCCGGCTTCTCCTCTGGCACAGGTCATTTCACAGCAATGGTGTGGAAGGGCAGTAAGAAGCTGGGTGTGGGGAAGGCCAGTGCGCCAGATGGCTCGTCATTCGTGGTAGCCAGGTACTTTCCAGCAGGGAACATCACCAACCAGGGACACTTTGACAACAACGTCCTGCCGCCCAAGGACTGAGGAACATACTGGCCCATCACTCTCATCCCCCAGGAGCTGACCATCCAAAAGACATTTGCACTTTGACTTGACtttatatacagtggcaagaaaaagtatgtgaaccctttggaaatacctggatttctacataaattggtcatcaaatttgatctgatcttcatctaagtcacaacaacagacaaacatagtgtggtaaactaataacacacaaagtattgtatttttcttgtctatattgaatacatcatttaaacatt

Function

NR:

description
Golgi-associated plant pathogenesis-related protein 1-like

GO: NA

KEGG:

id description
K24835 GLIPR2; glioma pathogenesis-related protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557357.2 True 994 mRNA 0.48 5 29087417 29090611

Neighbor

gene id symbol gene type direction distance location
trnat-ugu-28 NA coding downstream 75625 29011720 ~ 29011792 (-)
LOC110485998 LOC106605419 coding downstream 79506 28977829 ~ 29007911 (-)
LOC110485888 LOC106579893 coding downstream 368906 28715392 ~ 28718511 (-)
LOC110485879 LOC106605413 coding downstream 373378 28706863 ~ 28714039 (-)
LOC110485869 LOC106605412 coding downstream 381260 28703683 ~ 28706157 (-)
LOC110486122 LOC106605427 coding upstream 370333 29460944 ~ 29470038 (-)
hjv LOC106605430 coding upstream 388083 29478694 ~ 29489250 (-)
LOC110486192 LOC106605431 coding upstream 406256 29496867 ~ 29512154 (-)
mtx1a mtx1 coding upstream 432861 29523472 ~ 29540845 (-)
LOC110533728 LOC106605434 coding upstream 452438 29543049 ~ 29544879 (-)
G129882 NA non-coding downstream 151339 28904041 ~ 28936078 (-)
G129907 NA non-coding downstream 198761 28877390 ~ 28888656 (-)
G129904 LOC106605416 non-coding downstream 212199 28873492 ~ 28875218 (-)
G129896 NA non-coding downstream 221783 28860834 ~ 28865634 (-)
G129894 LOC106605415 non-coding downstream 226926 28855181 ~ 28860491 (-)
G130025 NA non-coding upstream 27276 29117887 ~ 29185848 (-)
G130027 NA non-coding upstream 59692 29150303 ~ 29172644 (-)
G130028 stea4 non-coding upstream 70103 29160714 ~ 29196616 (-)
G130158 NA non-coding upstream 257597 29348208 ~ 29348648 (-)
G130174 NA non-coding upstream 282548 29373159 ~ 29373728 (-)
LOC110534614 LOC106605399 other downstream 609586 28475823 ~ 28533709 (-)
G129582 NA other downstream 776685 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 937431 27933389 ~ 28149986 (-)
G129250 NA other downstream 1320885 27766157 ~ 27766532 (-)
LOC110485245 ubr5 other downstream 1809293 27231538 ~ 27278158 (-)
LOC110486376 LOC106605451 other upstream 778435 29859575 ~ 29878744 (-)
c2h8orf37 cssa05h8orf37 other upstream 1799082 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 1806415 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 2101808 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 2106462 31196917 ~ 31199241 (-)

Expression


Co-expression Network