LOC110486083 (LOC106605428)


Basic Information

Item Value
gene id LOC110486083
gene name LOC106605428
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29369835 ~ 29418297 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557438.2
GTATTGAACCAAACGTCACTGAGATAATGTAGACAGAAAATAGGCGGGAAAGATATGACGTAGCTAATTGACAGTCTGAACTCACCAATGGGCTGCCAAGCCTGAGCCCATACCTCAAGAACATTCTGGATTTGGACCAATCCACAGCTACGAGCGTTTTCGTCACTCAATACACATTTCCAAACAGCTGTTGTAAATAGACGAATGACATACTGCTAGCTAGTCTTTGATACCGGCAACAAGCATATATTTTTTCTAGATTTCACTACTTTCGTTATCCATTACAGGTGTTTGCCTCCTAACAATTGACTAAACGAAAGTTACCGGCAGTCAGACCTGAATTTAAACTGCCACCGCCTCAGCGCTCTTTGGAACATCAAAACGTGATGcatttaacgttagctagctaacgtagcaAATTGGTACTAACGAGTTAACGTTAGCAGGCTACTAGTAGCAAGGTAACGTTACGACTTGGACCAAGGGGAATTGGGCAGTTGGCTAACAGTCTAGCTCCTTAACTTATTGTTATCAATCTGGACAGCTGACCAGACAGCTAACTAGTTTACGCCCGCTGCTTTGCTGGAGAAGTCGGCCCACGCAAAGATAGCTGGGCAGTCGCGCCCACTTAacattagctaggtagctaactaacgttGATGCGCCTATCTCCCGCCTGTCCGCTGGTCAGACCGAGGAGATTGCCTTGTTACGGAGTTTCGTTGTGGCGGATGCCACCGGCCCCGTTTGCCGAGGGAAGCAAAGCACCAGTTCCTGGAAAGTCGAAGGGTAAACCACAACGCTAGCTAAGGTTAGCTATCCTACTCCAACCCGAACGGGACCGTGGCTGTGTACGTACTGACAGCTCTGTATTTGATtgtagttagctagccagctaaccgtTTGCCAGGGCTGTTGGACCAGTGTTATAGAGCGATGGGGGAGTTAAATAAAGAGGTTGTGGATCTAGTTTGGAAAAGACCAGGCAGTAACGGGGTGTCTGCTTCACTCTTCCGGAGATGGACCCAAGGGTTGGTCTTCAGTGAGACCGAACACACAGCACTGGAGCAGTTTGAAGGAGGACCCTGCGCTGTCATTGCTCCTATACAGGCCTTCCTTCTGAAGAACATCTTGTTTAACAGAGAGAGTTCTAACTGGAGACACATCACAGAGGAAGAGCAGAAAGCGGCCCTGTGTTCTACTCTGGCTGAGATCCTGGAACAGGCCTGCTCTACTTCCTCCACTACCTCCTTCTGCCTGGTGACCTGGGCCAAAGGACAGTGCCCCCACACTACCACTCATACACCCCTCACAGGGGGTCCAGAGACCAGCCAGCAACCCACTGCTTTGGCTGATGAGGATCTTGGCTTTGAGCGGTTTCACAGCATCCTCCAGAAGCGTATTGTGAAGTCATTATCAGAGCTTAGAGAGGAGGTGGTGTCTCTCTACGAAACCTGGAAAGGGCGCTGTGGAGTCCTGTTCTTCCTCTACTCTGTCATCCTCACCAAGGGGATAGTTAACATCAGGAATGAGATTGAAGATACTACAGAGCCTCTCGTAGATCCAGTCTATGGCCACGGCAGtcAGAGTCTGGTTAACCTGTTAGTGACGGGCCATGCTGTCTCTAATGTGTGGGATGGAGACAGGGAGTGCTCTGGCATGAagctCCATGGTATCCACAACCAGACATCTGTGGGCTTTCTCACTCTCATGGAGTCACTACGCTACTGCAAGGTGGGTGCGTTCCTGAAGTCTCCTAAGTTCCCTATATGGATCCTTGGCAGTGAGACTCATCTCTCAGTGTTCTTCGCCAAGGAGATGTGTCTGGTGGCTCCTGAGTCTCCATCTGAACAGGCCAGGAGAGTCTTCCAAACCTTCGACCCAGAAGatAACGGCTTTATTCCAGACTCTCTGTTGGAGGAGGTGATGAAGGCACTAGACCTCGTCTCAGAACCTGAATACTATGTGAGTCTGATGAAGAGTAAGTTGGATCCAGAGGGCTTGGGGATCGTGCTGCTGGCTCCGTTCCTCCTGGAGTTCTTCCCTGATCAGGATACTGGAATCCCAGACTCCTtccctgtctaccactacaatgGCCTGAAACAGTCCAACCACAACGAGAGGGTGGAGTATGTGCAGGGTACGGCCCTGGTCCTGGGCTTGGAGGACCCCATGGTGAGGACAGATGACACTCCAGTGAAGCGCTGCCTCCAGACCAAGTGGCCCTACATAGAACTGCTGTGGAATACTGACCGCTCCCCTTCACTTAACTAACTCGCTGCTAGGGTGGTAGAGGACTGACTGATCTCTACAGGAAAGAAGGCCACAAAGACTGAGACACACAGTACATGTGcactgctgcacacacacacagcaatttgCTCACTGTCCTGggcaggacaaaaacacacagaacatatgccattacacacacacttgacATACAGACACACTTGTTTACTGTTAATGCTGTTGTGTTTTACATGACTGTAAATGAAGTCACAGGATGTTTTTGGTTTGTTGTAAAAATCTGAATGAATTATTATTGTCACCCTG
>XM_036944567.1
GTATTGAACCAAACGTCACTGAGATAATGTAGACAGAAAATAGGCGGGAAAGATATGACGTAGCTAATTGACAGTCTGAACTCACCAATGGGCTGCCAAGCCTGAGCCCATACCTCAAGAACATTCTGGATTTGGACCAATCCACAGCTACGAGCGTTTTCGTCACTCAATACACATTTCCAAACAGCTGTTGTAAATAGACGAATGACATACTGCTAGCTAGTCTTTGATACCGGCAACAAGCATATATTTTTTCTAGATTTCACTACTTTCGTTATCCATTACAGGTGTTTGCCTCCTAACAATTGACTAAACGAAAGTTACCGGCAGTCAGACCTGAATTTAAACTGCCACCGCCTCAGCGCTCTTTGGAACATCAAAACGTGATGcatttaacgttagctagctaacgtagcaAATTGGTACTAACGAGTTAACGTTAGCAGGCTACTAGTAGCAAGGTAACGTTACGACTTGGACCAAGGGGAATTGGGCAGTTGGCTAACAGTCTAGCTCCTTAACTTATTGTTATCAATCTGGACAGCTGACCAGACAGCTAACTAGTTTACGCCCGCTGCTTTGCTGGAGAAGTCGGCCCACGCAAAGATAGCTGGGCAGTCGCGCCCACTTAacattagctaggtagctaactaacgttGATGCGCCTATCTCCCGCCTGTCCGCTGGTCAGACCGAGGAGATTGCCTTGTTACGGAGTTTCGTTGTGGCGGATGCCACCGGCCCCGTTTGCCGAGGGAAGCAAAGCACCAGTTCCTGGAAAGTCGAAGGGTAAACCACAACGCTAGCTAAGGTTAGCTATCCTACTCCAACCCGAACGGGACCGTGGCTGTGTACGTACTGACAGCTCTGTATTTGATtgtagttagctagccagctaaccgtTTGCCAGGGCTGTTGGACCAGTGTTATAGAGCGATGGGGGAGTTAAATAAAGAGGTTGTGGATCTAGTTTGGAAAAGACCAGGCAGTAACGGGGTGTCTGCTTCACTCTTCCGGAGATGGACCCAAGGGTTGGTCTTCAGTGAGACCGAACACACAGCACTGGAGCAGTTTGAAGGAGGACCCTGCGCTGTCATTGCTCCTATACAGGCCTTCCTTCTGAAGAACATCTTGTTTAACAGAGAGAGTTCTAACTGGAGACACATCACAGAGGAAGAGCAGAAAGCGGCCCTGTGTTCTACTCTGGCTGAGATCCTGGAACAGGCCTGCTCTACTTCCTCCACTACCTCCTTCTGCCTGGTGACCTGGGCCAAAGGACAGTGCCCCCACACTACCACTCATACACCCCTCACAGGGGGTCCAGAGACCAGCCAGCAACCCACTGCTTTGGCTGATGAGGATCTTGGCTTTGAGCGGTTTCACAGCATCCTCCAGAAGCGTATTGTGAAGTCATTATCAGAGCTTAGAGAGGAGGTGGTGTCTCTCTACGAAACCTGGAAAGGGCGCTGTGGAGTCCTGTTCTTCCTCTACTCTGTCATCCTCACCAAGGGGATAGTTAACATCAGGAATGAGATTGAAGATACTACAGAGCCTCTCGTAGATCCAGTCTATGGCCACGGCAGtcAGAGTCTGGTTAACCTGTTAGTGACGGGCCATGCTGTCTCTAATGTGTGGGATGGAGACAGGGAGTGCTCTGGCATGAagctCCATGGTATCCACAACCAGACATCTGTGGGCTTTCTCACTCTCATGGAGTCACTACGCTACTGCAAGGTGGGTGCGTTCCTGAAGTCTCCTAAGTTCCCTATATGGATCCTTGGCAGTGAGACTCATCTCTCAGTGTTCTTCGCCAAGGAGATGTGTCTGGTGGCTCCTGAGTCTCCATCTGAACAGGCCAGGAGAGTCTTCCAAACCTTCGACCCAGAAGatAACGGCTTTATTCCAGACTCTCTGTTGGAGGAGGTGATGAAGGCACTAGACCTCGTCTCAGAACCTGAATACTATGTGAGTCTGATGAAGAGTAAGTTGGATCCAGAGGGCTTGGGGATCGTGCTGCTGGCTCCGTTCCTCCTGGAGTTCTTCCCTGATCAGACAGGGACTCTGTGGCAGGGAACCATGGCTGAAGAGTGGGAGAGCGAGAGGCAAAGAGAAAGAAAGGATACTGGAATCCCAGACTCCTtccctgtctaccactacaatgGCCTGAAACAGTCCAACCACAACGAGAGGGTGGAGTATGTGCAGGGTACGGCCCTGGTCCTGGGCTTGGAGGACCCCATGGTGAGGACAGATGACACTCCAGTGAAGCGCTGCCTCCAGACCAAGTGGCCCTACATAGAACTGCTGTGGAATACTGACCGCTCCCCTTCACTTAACTAACTCGCTGCTAGGGTGGTAGAGGACTGACTGATCTCTACAGGAAAGAAGGCCACAAAGACTGAGACACACAGTACATGTGcactgctgcacacacacacagcaatttgCTCACTGTCCTGggcaggacaaaaacacacagaacatatgccattacacacacacttgacATACAGACACACTTGTTTACTGTTAATGCTGTTGTGTTTTACATGACTGTAAATGAAGTCACAGGATGTTTTTGGTTTGTTGTAAAAATCTGAATGAATTATTATTGTCACCCTG

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase FAM188A-like isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K22647 MINDY3_4; ubiquitin carboxyl-terminal hydrolase MINDY-3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557438.2 False 2556 mRNA 0.49 15 29369835 29418297
XM_036944567.1 True 2622 mRNA 0.50 16 29369835 29418297

Neighbor

gene id symbol gene type direction distance location
LOC118937130 NA coding upstream 137114 29231578 ~ 29232721 (+)
LOC100136336 stea4 coding upstream 173195 29172098 ~ 29196640 (+)
LOC110486065 NA coding upstream 198716 29164798 ~ 29171119 (+)
LOC110486049 stea4 coding upstream 208026 29150877 ~ 29161809 (+)
LOC110486020 LOC106605423 coding upstream 288299 29060588 ~ 29081536 (+)
LOC110534631 LOC106580029 coding downstream 6525 29424822 ~ 29478401 (+)
LOC110486208 NA coding downstream 126947 29545045 ~ 29553946 (+)
LOC118944146 NA coding downstream 175867 29594164 ~ 29594216 (+)
LOC118936731 dcst2 coding downstream 236578 29654875 ~ 29662028 (+)
LOC110486269 LOC106580132 coding downstream 260910 29679207 ~ 29685150 (+)
G129099 NA non-coding upstream 2504 29366974 ~ 29367331 (+)
G129093 NA non-coding upstream 13309 29355472 ~ 29356526 (+)
LOC110485935 LOC106605415 non-coding upstream 504660 28783574 ~ 28865311 (+)
G128813 NA non-coding upstream 518026 28851577 ~ 28851809 (+)
G128638 NA non-coding upstream 596253 28768219 ~ 28773582 (+)
G129149 NA non-coding downstream 54985 29473282 ~ 29473490 (+)
G129151 NA non-coding downstream 55956 29474253 ~ 29474520 (+)
G129153 NA non-coding downstream 57475 29475772 ~ 29475990 (+)
G129154 NA non-coding downstream 57784 29476081 ~ 29476358 (+)
G129145 NA non-coding downstream 60415 29478712 ~ 29480636 (+)
G128853 LOC106605419 other upstream 388547 28939899 ~ 28981288 (+)
LOC110485990 LOC106579931 other upstream 425445 28931988 ~ 28951235 (+)
G128490 NA other upstream 821920 28250842 ~ 28547915 (+)
G128436 NA other upstream 1280390 28088647 ~ 28089445 (+)
G128185 NA other upstream 1652672 27716482 ~ 27717163 (+)
G129155 NA other downstream 66336 29484633 ~ 29485130 (+)
G130308 NA other downstream 181729 29600026 ~ 29641096 (+)
LOC110486279 LOC106605442 other downstream 267670 29685855 ~ 29697686 (+)
G130414 NA other downstream 371279 29789576 ~ 29789831 (+)

Expression


Co-expression Network