LOC110534631 (LOC106580029)


Basic Information

Item Value
gene id LOC110534631
gene name LOC106580029
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29424822 ~ 29478401 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944640.1
AGAAGCGCGCTACCGCAGCGACAGGAGAGTCTGGCTACAGGCTGTAGAGGAgtttagagtgtgtgtgagtgagagcatCAAGAGATCTGACCCGgcggagagtgtgtgtgagtgcctaGTGTGGGAGACAGCGGCGAGAGCGCAACGCACGGGCACGCACAACTTGGGATAACTCACCTGGCTGGACAgaaacatctctctccctccatctcgccTATCATCTCTCTCCTTGCTAAGGGATTCGAGCGGTGTGATAGACTACTGGTCTGGCTGCGGGGAAGGTGTTAATGTGTGCCTATAGGATGTATGCATTTGGTGGGATGTTGTGTCGCGTGGTGTCGGTGCTATGGCCTGTCCTTTCGATTGTCTCGGGCTTCAACCTGCATGCGGAGCGCCCTGCGGTGTTCCGAGGACCAGAGGGGAGCTACTTTGGTTACTCCGTGGACTTCTACCGACCGACCCCCGAAAGCAGCACGTTGAGTGTGTTGGTGGGAGCGCCCAAGGCCAACACATCCCAGCCAGGCATCATAGAGGGAGGAGCTGTCTACTACTGTCCCTATCCCCTAAACCCTGACCCCACCAAGCAACCCTACAGCTGCACACAGATACCCTTCGACAACGCCAataACAGGATGATTAAGGTTAATGGCACCAGGGAGCCTCTGGAGTTCAAGTCACACCAGTGGTTTGGAGCCTCAGTTAGAACTCACAAAGACAAAGTGGTGgcctGTGCTCCTCTCTACCACTGGCGTACTGTGGTGAACGGTGAGAAGGACCCGGTAGGAACCTGCTATGTTGCCGTGCAGAACTTCAGCGCCTACGCAGAATACTCACCCTGTAGGACCAATGATCCAAACCCGGAGGGACAGGGTTTCTGCCAGGCCGGGTTCAGTGTGGACTTCACCAAGGAGGGGACACTGGTGGTGGGTGGACCTGGCAGCTTCTACTGGCAAGgtcagGTGATGACTGCAGGCGTAGCAGAGATATTGAATGGTTACTCTCTGAAAGCCGTGCTCAGGAGAGTCCCTGGAGAGAAACAGACCCACGCTGCAGCTGATACCCATGACGACAGCTacctagGTTACTCTGTGGCAGTAGGGGAATTCACAGGAGACTCAGAGCAAGaGCTGATAGCTGGTGTTCCGAGAGGGGCACAGAACTTTGGATATGTAGCTGTGATTAACTCCACTAATCTGACATTCATCATGaacttcacaggagagcagATGGCTTCCTACTTTGGCTATTCTGTGGCTGTTACTGACCTCAACGGAGATGGGTATGATGATGTACTGGTAGGAGCACCTCtctacatggagagagagagggagagtaaaccTAAGGAGGTGGGCCGTGTCTACCTGTACCTCCAGCACTCCCCGCTCACCTTCTCCGAGCCCCTTCTCCTGACGGGAACACACACCTTTGGACGCTTTGGCACTGCCATCGCCCCGCTAGGAGACCTCAACCAGGACGGATACAAcgACGTGGCAGTGGGTTGTCCGTTTGGTGGGGAGGACCGGAGTGGCCTGGTGTTGATCTACAATGGCCAGAGAGACCTGACGGCCCGCGGCCTAACCCTCAGCCAGGAGCTCTATGGAGCCTGGGCCTCCAGTAGTGGCCTCTCCGGCTACGGCTTCACCCTGAGGGGGGACAGAGACCTGGACAACAACCATTACCCTGATCTGATAGTGGGAGCATTTGGTAAAGGGGAGGTGTCGGTGTACAGggctcgTCCTGTAGTGTCAGTGGAGGCAGAGATGATCCTGACTCCTAGAATCCTGAACCCTGATGACCGATCCTGCCTCCTGACAGAATCTGATATCATGGTGACctgTCTAAGGGTAGATATTTGTGCGAAGGTGAGCGGTGTGGGGATCCCAGACTCTGTAGtcCTGAATGCAGAGCTGCAACTGGATTGGCTTAAAGGTGTGAGGGGCGGAGTTAAGAGAGTTTATTTCCTGGATTCCCATCAGCCCCAACACACAGGGGTCCTAACGCTTGGCCACAGCCGTCCTCACTCCTGCCTGAACTATACTGTCTACCTACGAggGGAGGATGAGTTTAGGGATAAATTGACTCCCATCTCATTGGCTCTGAACTACAGTTTAGCCCCTCCATCCAACCTGGACCTCCCCCCTGTCCTCAACCGCTACAGCAGTACCTTCCTGCAGGAACAGGCATATATTCTGCTGGACTGTGGGGAAGACAACGAGTGTATTCCAGACCTCCAGCTATCTGCAAGCATagaccgTACAGAGCTGGTGGTCGGGGATGACAACCTGGTCATGTTGACCATAAACGCGGTTAACGAAGGAGAGGGGGCATATGAGACAGAGCTACACACACTCCTACCCCCTGAGGCTGATTACATAGGAGTGGAACGCAGGATAGAGgcTCTATCCAGGTTGAACTGTGAGTACAGGATGGTGAATGACTCCAGACTCGTGGTGTGTGACCTGGGGAACCCTATGGTTGCCGGAACAGAAgtATCTGTAGGTTTAAGGTTTGCTGTCCAAAGGCTGGATGATGCCGGTCCTCACATTGACTTTGACCTACAGATCCACagTTCAAACAAAGACAGCTCCAAGAGCAacccagtcagtctgtctctctccatctctgccagAGCTCAGCTAGACCTGAGGGGgGTGTGTCATCCCTCTCAGGTGGTTCTTCCGTTTCCTCATTGGGAGCCCAAAGAGAAGCCGGTCAAAGAGGATGACGTAGGACCCCAGGTCACACACATCTAcgagCTCCATAACTCAGGTCCCAGTAGTATCCGGGAGGCGGAGCTCCAGGTGGGCTGGCCCTCTCGTTTCCGTGACGAACACCTGCTCTACGCTCTGGAGGTTCTGACAGTCGGACCAATCAGCTGCCGGAGCAACACCAGCCTCAACCCCCTGGGCCTACAGacatccTCTGTCCAGGACACTCCAGAACTGTTGGGCTTTCTGAGGAACAGTAGCTCTCCTCACCGCTACAGGCGAGCCACCAATGCTGCCCAGCCCTACAGCAGCAAGACCCTGaaCTGCAGTAACATCATTTGTCTAAGAGTTCTGTGTGTGGTCGGGCGGTTGGACCGTGGTCAGAGCGCTGTAGTCAAGATCCGCTCCCGACTCTGGGCTCACACCTTCCTCCAGAGACGTAACGACCCATACCTCCTCAACTCCACCGTGTCCTTCAGAGTGACGGCCCTGCCCTaccgcctccaaccctcctccttaCCCCAACACACCACTTCAatgGGTACACTGGTGCTTTGGGGAACTCCTGATGTGGCGTTTGCTATTCCTCTGTGGGTCATCATCCTAGCCATCCTACTGGGACTGCTGGTCCTGGCCATGCTAACACTGGCCATGtggaagTGTGGTTTCTTTGACCGGGCTCGGCCGCCAGCGGATGACGTGTCAGACCGTGAGCAGCTGACTTCTGACCAATTAGCAGACGCCTAAGAACACTCACTGGCACCATGGAGACCAGTTCCTGATTCGAGGAGGCTGTTTGGGATGAGTTCCACCTCTTGAGTGAAATTAAATGAGATCTGCAGGCAGACTGCAAACTCACAGATCAAAGGTTATTTACCCCTTTTAAAGCTGATCTGTCATCAGTGAGTGGACTGCAAACTCACAAACCAAAGGCTGAAGTACCATTAAGATTGGTATTCAAACGGCACCAGAGTGACTGGGAACCATGCACACAGACGGAAGGCCTCAAGACAATTTTGGACAAGTAGAATGGACTCTGGTTCTAACCCTGCTTGTAGTTGAATATGTTTCTATGCACCGCTTGCCTCTGTGGGTTAGACTACTTGGGGATCTGTATGGTTGGATAATTCAGTTGGAGTTAACCAGTCTGGCTAACTTCAAATGGAGTTACCATCTGATGTCAGTGACTTGGTGTCCGCCTGCTTTCACTGTTAAATACATTCCATCATTGATcaatcacacacatgcacacatacatgcgcacacacacgaatgcacacgcaaacacacgcatgcacacacacacacgcaaacacagggGGCTGTACAGTATATATCTATGGATGGTGTATGTGCAATATTGGGATATTCTGTGTGATACTGAAGCTTGTTTACACTGGTATTATTTTATTAGAACTTGATGTTCAAATTGTTTGTGTATATTGTTTATTTAGTATACTATTGTGTATGTGAGTGTTTTTGTTGGTATATTAGTGTATGTGTCTTCGGAAAGTAGAAgaacccttaactttttccacattttgtaatattacagccttatcctaaaattcaTTAAATCattattttccctcatcaatccacacacaataccccataatgacaaagcaaaaacagg
>TU148818
AAACTCACAGATCAAAGGTTATTTACCCCTTTTAAAGCTGATCTGTCATCAGTGAGTGGACTGCAAACTCACAAACCAAAGGCTGAAGTACCATTAAGATTGGTATTCAAACGGCACCAGAGTGACTGGGAACCATGCACACAGACGGAAGGCCTCAAGACAATTTTGGACAAGTAGAATGGACTCTGGTTCTAACCCTGCTTGTAGTTGAATATGTTTCTATGCACCGCTTGCCTCTGTGGGTTAGACTACTTGGGGATCTGTATGGTTGGATAATTCAGTTGGAGTTAACCAGTCTGGCTAACTTCAAATGGAGTTACCATCTGATGTCAGTGACTTGGTGTCCGCCTGCTTTCACTGTTAAATACATTCCATCATTGATcaatcacacacatgcacacatacatgcgcacacacacgaatgcacacgcaaacacacgcatgcacacacacacacgcaaacacagggGGCTGTACAGTATATATCTATGGATGGTGTATGTGCAATATTGGG

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944640.1 False 4344 mRNA 0.52 30 29424822 29478401
TU148818 True 514 TUCP 0.44 1 29477617 29478130

Neighbor

gene id symbol gene type direction distance location
LOC110486083 LOC106605428 coding upstream 6525 29369835 ~ 29418297 (+)
LOC118937130 NA coding upstream 192101 29231578 ~ 29232721 (+)
LOC100136336 stea4 coding upstream 228182 29172098 ~ 29196640 (+)
LOC110486065 NA coding upstream 253703 29164798 ~ 29171119 (+)
LOC110486049 stea4 coding upstream 263013 29150877 ~ 29161809 (+)
LOC110486208 NA coding downstream 66843 29545045 ~ 29553946 (+)
LOC118944146 NA coding downstream 115763 29594164 ~ 29594216 (+)
LOC118936731 dcst2 coding downstream 176474 29654875 ~ 29662028 (+)
LOC110486269 LOC106580132 coding downstream 200806 29679207 ~ 29685150 (+)
LOC110486279 LOC106605442 coding downstream 207454 29685855 ~ 29697686 (+)
G129099 NA non-coding upstream 57491 29366974 ~ 29367331 (+)
G129093 NA non-coding upstream 68296 29355472 ~ 29356526 (+)
LOC110485935 LOC106605415 non-coding upstream 559647 28783574 ~ 28865311 (+)
G128813 NA non-coding upstream 573013 28851577 ~ 28851809 (+)
G128638 NA non-coding upstream 651240 28768219 ~ 28773582 (+)
G129145 NA non-coding downstream 311 29478712 ~ 29480636 (+)
G129146 NA non-coding downstream 2565 29480966 ~ 29482856 (+)
G129156 NA non-coding downstream 7365 29485766 ~ 29486092 (+)
G129157 NA non-coding downstream 7871 29486272 ~ 29486741 (+)
G129160 NA non-coding downstream 10552 29488953 ~ 29489241 (+)
G128853 LOC106605419 other upstream 443534 28939899 ~ 28981288 (+)
LOC110485990 LOC106579931 other upstream 480432 28931988 ~ 28951235 (+)
G128490 NA other upstream 876907 28250842 ~ 28547915 (+)
G128436 NA other upstream 1335377 28088647 ~ 28089445 (+)
G128185 NA other upstream 1707659 27716482 ~ 27717163 (+)
G129155 NA other downstream 6232 29484633 ~ 29485130 (+)
G130308 NA other downstream 121625 29600026 ~ 29641096 (+)
G130414 NA other downstream 311175 29789576 ~ 29789831 (+)
G131491 NA other downstream 1221781 30700182 ~ 30700623 (+)
G129154 NA non-coding upstream 1259 29476081 ~ 29476358 (+)
G129153 NA non-coding upstream 1627 29475772 ~ 29475990 (+)
G129151 NA non-coding upstream 3097 29474253 ~ 29474520 (+)
G129149 NA non-coding upstream 4127 29473282 ~ 29473490 (+)

Expression


Co-expression Network