LOC110486192 (LOC106605431)


Basic Information

Item Value
gene id LOC110486192
gene name LOC106605431
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29496867 ~ 29512154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557617.2
CTCACTGTCACATCCACTCTGCGCGAACGAGGTACTTGGCCGGAGCGCGCCTGTAGGAAGCCAGTCGACATTTGTAACGGCTCTTGAACCTATATTCTGCGGTCAACTCACCCTGCAGACTTATATTTTTCACTTTGAAATAAAGCTCCATTCATAAACATCAAAGTGGACTCTCGGCGGATGGTTATTTACTCCTGTTGACTTTCGTGTCAACTTTCCCGCACCGTTTCTTGGGACATGGGTGCGAGGCGCGATGGGCCAACTTTTCTGGCTCTATCCACATTTCTGTTCATTGCAACATGTGAGCCAATGGATAAGCAAGATATGCAAGtCATTGACATGCTAACGCTGGACTCCAAGACCAGCGTGTCTGCGGTGGAGAAGGTGACAGGTGCCATGAGTGTGCTCAGTGACATCTACATCGTGTCCACATTCCGCCTGCCTCCCAAAATGGGAGGGGTGCTGCTGGGCCTCTATAGCAAAGAGGAGAACAAGAAGTACCTGGAGCTGGCCATCATGGGAAAGATCAATAAAGCTCTGGTGCGTTACGTGAGGGAGGATGGCAAAATTCACACAGTGAACCTCCAGAGCGCAAACCTGGCTGATGGTCGCACACACTCCATTATTCTCCGGGTTGGAGGCCTGCGCAGAGACAACCTACACCTGGAGCTCTACGTCAATTGTCGATTGGCTGACTCCAGCCAGGGCCTCCCTCCATTGGTCCCTCTCTCTGCGGAGAAGGTGGAGATTCGTAATGGCTTCAAGGCCTACGCAAGGCTACAGGGCGCTGTGGAGTCCCTCAAAATGGCGCTAGGGGGCAGTGTGGCCAAAGCAGGTGCCCTGGCAGACTGTCCATTCCAGGGGGATTCATCAGTCTACAACACAGTCGGTGCGACTGCAGAAGTGAACTCCATTCTAGGTGACCACACTAAGGCTCTGATTGGTCAGCTAATCATCTTTAACCAGATCCTAGGAGAGCTGCGAGAGGACATCAGAGAGcaggTGAAGGAGATGTCCCTGATTAGGAACACCATTCTGGAGTGCCAAGTGTGTGGCTTCCACGACTCTCGTTCCCCCTGCTCCCCCAACCCCTGTTTTAAGGGTGTCTCCTGCATGGAGACCTTTGACTACCCAGGGTACCGCTGTGGTCCCTGCCCAGAGGGCATGATGGGCAACGGAACCCACTGCCAGGACATTGACGAGTGTTCCATAGCCCAGCCCTGCTACTCTCCAGGTGCGTGTATAAACACAGTGAAGGGTTTTAGCTGTGAGCTCTGCCCCCCTGGTCTCTGGGGCCCACCCCTCTTTGGGGTCGGACTGGAGTACGCCAAGTACCACAAGcagGAGTGTGTAGACATCGATGAGTGTATTGAAGTTGCCAATGCCTGTGTGCCCCACTCCATGTGTACCAACACCATCgGCTCGTTCAGGTGTGGTGGCTGTAAGGTGGGTTACCTGGGGAACCAGACAGTGGGCTGCATGCCCCGTAGGTCCTGTGCCACACTCAGCTTTAACCCGTGTGATGCCAACGCCCACTGCATTATAGAGAGGAACGGAGAGGTGTCCTGTGCGTGCAACATTGGCTGGGCCGGAAACGGGAACACTtgtggcacagacacagacattgaTGGATACCCAGACCGCTCTCTGCCCTGTATGGACAATGACAAGCACTGTAAACAGGACAACTGTGTTTACACACCCAACTCAGGCCAGGAGGACGCAGACAACGACGGCATCGGAGACCAGTGTGACGAGGACGCAGATGGGGACGGCATCAAGAATGTGGAGGATAACTGTCGACTAGAACCCAACAAAGATCAGCAGAACTCGGACACAGACTCTTTCGGTGACGCCTGTGACAACTGTCCCAATGTCCCTAACATTGACCAGAAGGATACGGACAGCAACGGGCAAGGAGACGCCTGTGACAATGACATAGATGGAGATGGTATCCCCAACGTGCTGGACAACTGCCCCAAGGTCCCCAAccccatgcagacagacagggacggaGACGGGGTAGGAGACGCCTGCGACAGCTGCCCTGAGATCAGCAACCCCATGCAGACGGACATTGACAATGACCTGGTGGGAGATGTGTGTGACACTGACCAGGACACGGATGGGGACGGTCACCAGGACTCCAGGGACAACTGCCCTGACCATCCCAACAGCTCCCAGCTGGACTCGGACAACGATGGCCTTGGGGACGACTGTGACGATGACGATGACAATGACTGGATCCCAGACATTCAAGACAACTGCAGACTTATCACCAACCCCAACCAGAAAGATTCTAACAgtaACGGGGTGGGCGACGTGTGTGAGAACGACTTTGACAACGATTCAGTCTGGGATCTGATTGATGTGTGCCCTGAGAGTTCagaggtcactctgacagacttcAGAGCCTATCAGACAGTCATTCTGGATCCAGAGGGCGATGCCCAGATCGATCCCAATTGGGTGGTGCTCAATCAGGGCATGGAAATAGTTCAGACCATGAACAGTGATCCTGGTTTAGCTGTGGGCTACACAGCGTTCAATGGGGTGGACTTTGAGGGCACCTTCCACATTAACACGGTGACGGACGACGACTATGCAGGCTTCATCTTCGGCTACCAGGACTCCTCTTCCTTCTACGTGGTGATGTGGAAACAGACAGAGCAGACCTACTGGCAGTCGACACCCTTCAGGGCCATGGCCCAACCTGGCCTGCAGCTCAAAGCAGTGAAGTCCCGTACAGGGCCTGGTGAGTACCTGCGTAACGCACTGTGGCACACAGGGGACACCAACGAGGAGGTGAAGCTGCTGTGGTCGGACCCACGGAATGTGGGCTGGAGAGACAAGACGTCTTACCGCTGGCAGCTCAGCCACAGGCCCCAGGTGGGCTACATCAGGGTGAAGTTATATGAGGGGACGGAGATTGTGGCTGACTCTGGCGTGGTGATTGACACTACCATGAGAGGCGGACGACTGGGGGTCTTCTGTTTCTCCCAAGAGAACATCATCTGGTCCAACCTGCGCTACCGCTGCAACGACACTGTTCCAGACGACTTCAACCCATATCGCAAACAGGTCCTGCTGCACATCAAGGTGTGAGATGATTCGAGGATGTGTGAGTGCTGAGGCATGTAGATGAGTAACCTGTCCAGCACTGTCTAtctacacactctcacacacacattcacacacacactcttactgCCTCTCAGTACAGACTTCCAACTGCTGTTcaaatgtgtgtgactgtgtctgcCATTGAGTGAAAGGGGAGGGGTTTCAGAGTTGTGGTAAAGGAGGAAGAAGAACCATTTTACAACATTGTTATTATACCAGACTGGAAAAGCAAAAAGGTACCAGAGACTTTGGAAGAAAGTATACATGATAATTCATGTATGTAGGACTGTGTTACTTCTGGGTTTGAGTTGCTGTTCTTGCCCTCAATTTCACTGTATGAACGGTGGTTGTGTGAATGACAGCGGTTAACCGTTGAGTTTGACTGTTGCGTTGGGTGTGAGTGCTGTTGTTGctttgtgtttttgtatttacAGCTATTATAGGAATACATGGATTCCATTTTGTGTTTTAAGACCGAACAGTTAAAGGATGTGTTTTTCCATCTCATATCTAactgtaaaataaaaaacataagcTAACGTTACAGGGATGATGGGAATTTGATAAATACTGTACATCCTCTGGATATGAAACTCCTGGTAACTCTGTCATGATCAGATAATGTCATCTCAGCAGCAAAAAACAGATCTGTAGCAAGAGACTGTAGACTTGCAGTTATTTAGCCATATTACGTTAAGCCTTTAATAGTGGAATTATGTCCCTATTTTGAATAAATGTGGATCTCTGTGGATTCTAGTGTA

Function

NR:

description
thrombospondin-3a-like

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0008201 heparin binding molecular_function

KEGG:

id description
K04659 THBS2S; thrombospondin 2/3/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557617.2 True 3884 mRNA 0.51 22 29496867 29512154

Neighbor

gene id symbol gene type direction distance location
hjv LOC106605430 coding downstream 7617 29478694 ~ 29489250 (-)
LOC110486122 LOC106605427 coding downstream 26829 29460944 ~ 29470038 (-)
LOC110486042 LOC106605424 coding downstream 406256 29087417 ~ 29090611 (-)
trnat-ugu-28 NA coding downstream 485075 29011720 ~ 29011792 (-)
LOC110485998 LOC106605419 coding downstream 488956 28977829 ~ 29007911 (-)
mtx1a mtx1 coding upstream 11318 29523472 ~ 29540845 (-)
LOC110533728 LOC106605434 coding upstream 30895 29543049 ~ 29544879 (-)
LOC110486216 LOC106605435 coding upstream 45149 29557303 ~ 29570811 (-)
si:dkey-7j14.6 LOC106605437 coding upstream 59558 29571712 ~ 29575352 (-)
LOC110486243 LOC106605438 coding upstream 67698 29579852 ~ 29599325 (-)
G130254 NA non-coding downstream 1944 29494577 ~ 29494923 (-)
G130252 NA non-coding downstream 3492 29493082 ~ 29493375 (-)
G130245 NA non-coding downstream 18236 29478427 ~ 29478631 (-)
G130244 NA non-coding downstream 18650 29477444 ~ 29478217 (-)
G130558 NA non-coding upstream 36809 29548963 ~ 29549162 (-)
G130536 NA non-coding upstream 42336 29554490 ~ 29554966 (-)
G130563 NA non-coding upstream 52807 29564961 ~ 29565292 (-)
G130564 NA non-coding upstream 53654 29565808 ~ 29566032 (-)
G130565 NA non-coding upstream 53953 29566107 ~ 29566318 (-)
LOC110534614 LOC106605399 other downstream 1019036 28475823 ~ 28533709 (-)
G129582 NA other downstream 1186135 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 1346881 27933389 ~ 28149986 (-)
G129250 NA other downstream 1730335 27766157 ~ 27766532 (-)
LOC110485245 ubr5 other downstream 2218743 27231538 ~ 27278158 (-)
LOC110486376 LOC106605451 other upstream 356892 29859575 ~ 29878744 (-)
c2h8orf37 cssa05h8orf37 other upstream 1377539 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 1384872 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 1680265 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 1684919 31196917 ~ 31199241 (-)

Expression


Co-expression Network