LOC110533728 (LOC106605434)


Basic Information

Item Value
gene id LOC110533728
gene name LOC106605434
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29543049 ~ 29544879 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618206.2
TGTCTGCAATGATGGAGGAGTGGTGTGAGTTCGTGACCTATTTCGGTACATAGATATTCCGCACTCTTTGGCAATCTCAGCAGTTTGGCACTTGATATGTGTGCTAGAACACCTCACCCTAAAGATGTGTTCAAGTTGGATGCAGGTGACATTTCTCCTTGCACACTTGATTGTTGCAGGAGCAGTGGTATACCAGTACCCAGGGTCACTAACAGTGGCAGAGGGTACCAATGTGACGTTTCACTGTGACATCAGTGAAATGGGAGGGGAATGCTCTTATATCGTATGGGTGCAAGTGGGACCTATGAGAAAGCTCACACTCTGGCCTCAAAAAACCTACAGTGTCCACACCAACACGGCCTGCCTCCTGAACATCATCAATGCCAACAGGACAAGTGTGGGCATCTTCTACTGTGCCCTGCTTAATGGTGCCATGCTGAACATGGGCAATGGGAGTGTGCTGGAAGTCTCTGACCCTATCACCTCTGAAGCTACTCTGGAGGTCCTGGTGCCTGTGGACTGGCAGGAGGCCCCCTCATCCCCAGTCCCACTCCTGTGCCTGGTGTCTGGACTGGATCCCAGTCAGGCCAGGGTGtactgggaggtggaggggaAGGTTCAGTCCTCAGAGCGTTTACCTGAGGTTCAGTCAGAGAAGCCAGCCACTGTCAGAGTCCAGATCTCTGTACCTGGCCATACCTGGGCTGAAGGTGAAGAGATCACCTGTGTTATGGAGAGCACCAGTGGGGTGAAGATGAACAAGACAGTCAGCAGGATGGGAATGGAGAGGTCCAGACAGGGAATGTTTCTGGCCATCTCTTTGGGCGGCATGTGTATCCTTCTTTCTATTGTGGTGATTGTCATCACCTTGTATGTTTGCAGAATGAGACACGACCCTCGAAAGAAAAGATTTCAAGCCTATGAGCACAACCAGGACGGAGCACAGGGTCTGACTGAAGTGCAATATGCCAGTTTAAAGTTTGGAGCTGGTCGTGGGAGACCCTTACCTACAGCCGCAGCTAAAAACAGACAATATAAGTAGGCTAAAGCTGCCCTAGTAAGACCTTACATGTGAATTACATTTTCTACAAAAACATAAAAGAAGTGCTTATTCATTCAGGGTCATCGGTTTGTCAAAATGCTCCTGTGCTTTCTTGCTTATGTTTTCTGACCTACTTATTTGAGTCAATGATGTAAGGATTTTTGCCTTTAAAATTAGGAACTTATTTAGTCAGA

Function

NR:

description
uncharacterized protein LOC109901450 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618206.2 True 1236 mRNA 0.48 6 29543049 29544879

Neighbor

gene id symbol gene type direction distance location
mtx1a mtx1 coding downstream 2204 29523472 ~ 29540845 (-)
LOC110486192 LOC106605431 coding downstream 30895 29496867 ~ 29512154 (-)
hjv LOC106605430 coding downstream 53799 29478694 ~ 29489250 (-)
LOC110486122 LOC106605427 coding downstream 73011 29460944 ~ 29470038 (-)
LOC110486042 LOC106605424 coding downstream 452438 29087417 ~ 29090611 (-)
LOC110486216 LOC106605435 coding upstream 12424 29557303 ~ 29570811 (-)
si:dkey-7j14.6 LOC106605437 coding upstream 26833 29571712 ~ 29575352 (-)
LOC110486243 LOC106605438 coding upstream 34973 29579852 ~ 29599325 (-)
LOC110486252 LOC106605439 coding upstream 58370 29603249 ~ 29639641 (-)
plin6 NA coding upstream 153780 29698659 ~ 29707941 (-)
G130254 NA non-coding downstream 48126 29494577 ~ 29494923 (-)
G130252 NA non-coding downstream 49674 29493082 ~ 29493375 (-)
G130245 NA non-coding downstream 64418 29478427 ~ 29478631 (-)
G130244 NA non-coding downstream 64832 29477444 ~ 29478217 (-)
G130558 NA non-coding upstream 4084 29548963 ~ 29549162 (-)
G130536 NA non-coding upstream 9611 29554490 ~ 29554966 (-)
G130563 NA non-coding upstream 20082 29564961 ~ 29565292 (-)
G130564 NA non-coding upstream 20929 29565808 ~ 29566032 (-)
G130565 NA non-coding upstream 21228 29566107 ~ 29566318 (-)
LOC110534614 LOC106605399 other downstream 1065218 28475823 ~ 28533709 (-)
G129582 NA other downstream 1232317 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 1393063 27933389 ~ 28149986 (-)
G129250 NA other downstream 1776517 27766157 ~ 27766532 (-)
LOC110485245 ubr5 other downstream 2264925 27231538 ~ 27278158 (-)
LOC110486376 LOC106605451 other upstream 324167 29859575 ~ 29878744 (-)
c2h8orf37 cssa05h8orf37 other upstream 1344814 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 1352147 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 1647540 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 1652194 31196917 ~ 31199241 (-)

Expression


Co-expression Network