LOC110486208


Basic Information

Item Value
gene id LOC110486208
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29545045 ~ 29553946 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557640.2
ACGTCACATCTTGTCCCCTTACCTTTATATATGTCCCATCTATAGGAGAGAGGGtgtgcgcgagagagagagggcgaattTTGGGCATGGGGTGGGATTGAGGGCGATAGGAAGAAAGAAAGTTGTGTCACAATGTGTATTTGATTACTGTTATCAGGGAGAAAAGGTCTCATTGTTGCAGCACTCCTTTTCTTTGCTGACGTAGTGCCTGTTTCCCGTTTACGGAGGGCAACACCCAGCAGCAATGACGAGACCACCCCAGCTACGCTGTCCGCCTACTACTTATGCGTCAGAATCACCAACCAGATTTACACTGAGTCACTCAATAATCAAAGCTCTAAGGAGTACAAACAGCTGAGGAAACAGGTGGAACAGATGATGGATGACGTCCACAGCTCTTTGCCAGAGTCTGACAAATACATGGGTGTATTTGATATAATCTTCAGTAATGGATCAGTCATTGCAAACTCAACATTAATGTTTGGGACTACATTCATGATCATTCCAACTTTAGCTAAAGGTCTACTTTCCATTCATATCCAATCAAATAAATCCAAAACCCTTGACCTGGACCTCGCCTATACTGAAGGTCAACTTCCAATAAAAGCCACACTACCTCTTGTAGCACGTACAACAGCAACCGTAACTTCCTCACCACCATCTACCACAAATACCCCTGCAGCAACGACTACTACAGTTGCCTTAGTTAGTACGGCTAGCCGTTCAGGAAGGGTCGGGGATGGAACTGCATCTACAGCAATGATTTCATCTGGCAACATCACCAGTCTTGCAACAATTAATATTTCAAGTAGTCATACCCTCACAACCACCACAGCACAATTAGCAGCATTACCACTCATATTCCTGAAGAACATAACACTAGAATTAGCAGCATTACCACTCATATTCCTGAAGAACATAACACTACAATTAGCAGCATTACCATTCATATTCCTGAAGAACATATCACTACAATTAGCAGCATTACCACTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATAACACTACAATTAGCAGCATTACCATTCATATTCCTGAAGAACATATCACTACAATTAGCAGCATTACCATTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATATCACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCATTCATATTCCTGAAGAACATATCACTACAATTAGCAACATTACCATTCATATTCCTGAAGAACATATCACTACAATTAGCAACATTACCACTCATATTCCTGAAGACCATAACACTACAATTCGCAACATTACCATTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATATCACTACAATTAGCAACATTACCATTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCATTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATATCACTACAATTAGCAGCATTACCACTCATATTCCTGAAGAACATAACACTACAATTAGCAGCATTACCATTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATATCACTACAATTAGCAACATTACCATTCATATTCCTGAAGAACATATCACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATATCACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATAACACTACAATTAGCAACATTACCACTCATATTCCTGAAGAACATATCACTACAATTAGCAACATTACCACTCATATTCCTGAAGACCAAAACACTACAATTAGCAACATAACCACCCCTATTCCTGGAGACCATAACATTACAATTAGCAACATAACCACCCCTGCTCCTGGGGACCCTAACATAACAATTAGCAACGTAAGCACCCATATTCCTGGAGACCACAACATTACAATTAGCAACATAACCACCCCTAGTCCTGGGGACCCTAACATAACAATTAGCAACGTAAGCACCCATATTCCTGGAGACCACAACAATACAATTAGCAACACAACCACCCCTGCTCCTGAAGACCACAACATTACAATTAGCAACATAACCATCCCTAGTCCTGGGGACCCTAATATAACAATTAGCAATGTAAGCACCCATATTCCTGGAGACCACAACAATACAATTAGCAACACAACCACCCCTATTACCCCTAAAAATCCTCCCCAGACCAGTAGCACGACAGTCTTCCGTAAAACCTCTCCATCAACAACTGCCTCAGGCCAATCTAACCCCCCAGTTGCCCCTACTGAGAGAGCAACAAGCAGGCATCAGGCTGCCACAGGCCAAACGACCAATCATAAGAACCCAGAGAATACGGAGGCGACACATAAGACCACAGAGAATGCTGCAGCTGTAGTTGCTGGGGGCGGAGAGGGAGTCCCAAGATGGGGGATCGCTCTATTGGTACTGGCTGTCCTGACCTTGTTAATCCTCCTTATTCTCCTAATACTGCTGCTAGTGTGGTTGTGCTGTAGGCAGAGATGTGGAAGTTTCAGCCCATATAACCAGATCAACCACGGGGCAGACATCCAaatgtactccacacacagccgCTTCGACGTGCCCAACGGCAAGCCTAATGACGAAATGCGGGGACCATCGAAAAACCGAACAGGGATGCATGTGGTGAACGAATACTGACACACAGAAGCTCCAGTCAATTGGGTAAGAAGACCATCTGAAATGGCCTTATGAAGTAATATGCATGGGAGCAATGACAATTCTGTACAAATGGTCCAATTATCTCTGAAGTATCTGAATGAAGATCATGGCGTTGGCTCACTGATTGTAATTTCAACCTGtatttattcaaatcaaatcacatttatttataaagccctttttacatcagctgatgtcacaaagtgctatacagaaacccagcctaaaaccccaagcaagcaatgcagatgtccta
>TU150163
GTAATATACTTTCAAAGCCTATTTTTACATCAATGTTGTGAAATAGGGTGGCAGAACAACGTGGTGGCGAATGTGTCAATAAATACAAAGAAGGTTAATCCACTTGACAGTGTTTGTATTATAATTCACCTCCCTGTCCTCAATTTTTCGATACCCTGACATCCCAGTACACAAAATTGTAGCCTACATGTCCCCAACTACGTCACATCTTGTCCCCTTACCTTTATATATGTCCCATCTATAGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557640.2 False 3255 mRNA 0.41 8 29545244 29553946
TU150163 True 247 lncRNA 0.39 1 29545045 29545291

Neighbor

gene id symbol gene type direction distance location
LOC110534631 LOC106580029 coding upstream 66843 29424822 ~ 29478401 (+)
LOC110486083 LOC106605428 coding upstream 126947 29369835 ~ 29418297 (+)
LOC118937130 NA coding upstream 312523 29231578 ~ 29232721 (+)
LOC100136336 stea4 coding upstream 348604 29172098 ~ 29196640 (+)
LOC110486065 NA coding upstream 374125 29164798 ~ 29171119 (+)
LOC118944146 NA coding downstream 40218 29594164 ~ 29594216 (+)
LOC118936731 dcst2 coding downstream 100929 29654875 ~ 29662028 (+)
LOC110486269 LOC106580132 coding downstream 125261 29679207 ~ 29685150 (+)
LOC110486279 LOC106605442 coding downstream 131909 29685855 ~ 29697686 (+)
LOC110486333 LOC106605448 coding downstream 211736 29765682 ~ 29768627 (+)
G130265 NA non-coding upstream 22443 29521303 ~ 29522801 (+)
G129176 NA non-coding upstream 33111 29511836 ~ 29512133 (+)
G129165 NA non-coding upstream 47538 29495804 ~ 29497706 (+)
G129160 NA non-coding upstream 56003 29488953 ~ 29489241 (+)
G129157 NA non-coding upstream 58503 29486272 ~ 29486741 (+)
G130282 NA non-coding downstream 461 29554407 ~ 29554905 (+)
G130297 LOC106605438 non-coding downstream 23715 29577661 ~ 29581410 (+)
G130345 LOC106581475 non-coding downstream 110064 29664010 ~ 29671945 (+)
G130335 LOC106580167 non-coding downstream 172605 29726551 ~ 29744867 (+)
G130410 NA non-coding downstream 231180 29785126 ~ 29785365 (+)
G129155 NA other upstream 60114 29484633 ~ 29485130 (+)
G128853 LOC106605419 other upstream 563956 28939899 ~ 28981288 (+)
LOC110485990 LOC106579931 other upstream 600854 28931988 ~ 28951235 (+)
G128490 NA other upstream 997329 28250842 ~ 28547915 (+)
G130308 NA other downstream 46080 29600026 ~ 29641096 (+)
G130414 NA other downstream 235630 29789576 ~ 29789831 (+)
G131491 NA other downstream 1146236 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 1194109 30748055 ~ 30749954 (+)
G130290 NA non-coding downstream 994 29546285 ~ 29546516 (+)
G130291 NA non-coding downstream 1368 29546659 ~ 29547042 (+)

Expression


Co-expression Network