LOC110486216 (LOC106605435)


Basic Information

Item Value
gene id LOC110486216
gene name LOC106605435
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29557303 ~ 29570811 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557662.2
TACATTTGTGTTTATATTCCTTGGACATGACAGCCAGCCATAGAAGCTAAGAAGATCAGTGGGCAGGAAACAATAGCTAACAAGGCAGGAGCCCACTGGATAGTTAGCTAATACAGCTTGGGAATTGATCAGAATAACGGCTAGCTATAGAGTTATCTTGGTTGTCAATACTTCAGTGAACTGCAGTGGGATGTCAATTGCGATACTCATTTGAACAAATGTGTAATGTggcaatattagctagctagctaacgtgcaTTGCCATTCTTATATTGCTTTCAGATTTGTTATCGCTCGCAGGATTATTTTACAAATTGTTTTGTAAATCAGGCTAGCCAACTCACCTGCATTAAACTACTGTATCTATCAATAAGGATAATAATTGACAACCATGGAAAAAGTCACGAAAATACTGGTTCATCTGTCGAAGAATAATGTCGCACCGCAATGTGCCCGTTTTGTACAGAGCATAACAGGTCATTTTACAGAGACTCTTGATGATGAGGTGGAGGTGAAGTGTTCTTTGGAGAACAATCGCTTTATACTGTGTGACTGCGAGAAGGGGAGAGGAATTCCTCTAAAGAGGGCAACCTTTTGCCCCTTCAAGTATCTGTCTGACGCAGAGGCAGCTGCAATCCCATTGGATGTTCAGAGCCGCGGAGTGGATGTGGGGGTTGCTATTCTTCTgcagtcagccaatcagaaggTGTTGTTAACTCGACGGGCGGCCAGTCTCCGCATTTTCCCCAATGTGTGGGTTCCTCCAGgTGGCCATGTGGAACTGGATGAGAGGCTCCTGGACGCAGGGCTGAGGGAGCTGAGGGAGGAGACAGGACTGAAGCTGGACCCTGGAGACGTCTCAGCTCAGCTGCTGGGGCTCTGGGAGTCAGTTTTCCCACCCATGCTGAGCAGAGGGATGCCGCAGAGGCACCATGTGGTCACTTACATGCTCCTAAACACCTCCCTCACACACCAGCAACTCCAGGCCTCTCTGCACCCCAAGCCTGCTGAGGTCAGTGGTTGTCTGTGGGTGGACGCCTCGCTGGTCAAGGCCATCGTGTCCGCCGTGGACGGAGAGGAGGGTTCTGTGACACCGTTGGAGGGCCTGGCTCCAACCATAAGTGTATCGGAGGTCTCTCCGGAAGGTGGGCTCAGTGAGTCAATTTTGCCATTGTCTGTTTTGTGTAACCGGGCCCCGAATAGCGGACAGGATGTGGAGCGGGTCAGCACTGGTACCAAATACGCCCTGGAGCTCTGGCTTAAGAACCTGGAGGGACAGGGGACCCGGTGTTAACTGTCTTTACTAAACCTGGACGTCTAGCCCTGTGATGAAGTGACTTCCTGGAGGatgacatcacttcctggagTTTGCCTTAACCGGTGAAGGTCACCTAAAGTGAACTATCATCTTTCAAAAAATCTTGTACGTATTAACCAATAATGAACTTTGGGTGATCTGTCCCTTTAATATCTACAGCAACACCTACAAGTCTTATATGACTGTTTGAGGGCTTTGCATGAGCTATCAATGTTGTGCGTAAGAACAGTTTTTATTGCAAGGGTGTTGTTAGTGATGAAATGTTATGAACAAAGTGGATTTATACTGCAGATGCTTTTGTGATCATTATATTCCATTTGCGCCTTCAAGCCACAAGATGGCAATGCATAGCCTACACAGTGATTTCACATTTGGAAACAAGCGCAAAACAATCAGAATTCTGATTTAAGTTTACATAATTATCTTGACTtgtaaataataatgtgttcttaactgactcgcctgattaaataaaaatgtatacaaatattta
>XM_021557653.2
CAAGCCTTGATTCAATTTGCTACAACTTGAAGGAATGCCGTGCCCCTCCCTCCAACATCCTCTCAGAGGAACAGCTGTCGAGTTATTCCAGGGGAAACTCCAAGACTCTGGGAGCATAACAGGTCATTTTACAGAGACTCTTGATGATGAGGTGGAGGTGAAGTGTTCTTTGGAGAACAATCGCTTTATACTGTGTGACTGCGAGAAGGGGAGAGGAATTCCTCTAAAGAGGGCAACCTTTTGCCCCTTCAAGTATCTGTCTGACGCAGAGGCAGCTGCAATCCCATTGGATGTTCAGAGCCGCGGAGTGGATGTGGGGGTTGCTATTCTTCTgcagtcagccaatcagaaggTGTTGTTAACTCGACGGGCGGCCAGTCTCCGCATTTTCCCCAATGTGTGGGTTCCTCCAGgTGGCCATGTGGAACTGGATGAGAGGCTCCTGGACGCAGGGCTGAGGGAGCTGAGGGAGGAGACAGGACTGAAGCTGGACCCTGGAGACGTCTCAGCTCAGCTGCTGGGGCTCTGGGAGTCAGTTTTCCCACCCATGCTGAGCAGAGGGATGCCGCAGAGGCACCATGTGGTCACTTACATGCTCCTAAACACCTCCCTCACACACCAGCAACTCCAGGCCTCTCTGCACCCCAAGCCTGCTGAGGTCAGTGGTTGTCTGTGGGTGGACGCCTCGCTGGTCAAGGCCATCGTGTCCGCCGTGGACGGAGAGGAGGGTTCTGTGACACCGTTGGAGGGCCTGGCTCCAACCATAAGTGTATCGGAGGTCTCTCCGGAAGGTGGGCTCAGTGAGTCAATTTTGCCATTGTCTGTTTTGTGTAACCGGGCCCCGAATAGCGGACAGGATGTGGAGCGGGTCAGCACTGGTACCAAATACGCCCTGGAGCTCTGGCTTAAGAACCTGGAGGGACAGGGGACCCGGTGTTAACTGTCTTTACTAAACCTGGACGTCTAGCCCTGTGATGAAGTGACTTCCTGGAGGatgacatcacttcctggagTTTGCCTTAACCGGTGAAGGTCACCTAAAGTGAACTATCATCTTTCAAAAAATCTTGTACGTATTAACCAATAATGAACTTTGGGTGATCTGTCCCTTTAATATCTACAGCAACACCTACAAGTCTTATATGACTGTTTGAGGGCTTTGCATGAGCTATCAATGTTGTGCGTAAGAACAGTTTTTATTGCAAGGGTGTTGTTAGTGATGAAATGTTATGAACAAAGTGGATTTATACTGCAGATGCTTTTGTGATCATTATATTCCATTTGCGCCTTCAAGCCACAAGATGGCAATGCATAGCCTACACAGTGATTTCACATTTGGAAACAAGCGCAAAACAATCAGAATTCTGATTTAAGTTTACATAATTATCTTGACTtgtaaataataatgtgttcttaactgactcgcctgattaaataaaaatgtatacaaatattta
>TU150443
GCCGTGCCCCTCCCTCCAACATCCTCTCAGAGGAACAGCTGTCGAGTTATTCCAGGGGAAACTCCAAGACTCTGGGGTGAGCACTCAGTTCGTTCATAGATGTTTATAGAACAGTTAGGATACTATGGATGGAAGGTATGAATGAATGTGGTTTTGTACTATATATGCCTATAGTAGtagctgttctgtcatgttcATGATGCACTGCCTGTAGCTTATAAATGTGTAATCAGTTCATACATTTTTAGAGTCTCTTTCTCACTCTACACACTTCTAAGGTGTTTGAGATGATCATTGGGGCTGCTAACGGTCTCCATGGCTGGGAATCTTTTTCAGCTGAACAGTTTCTTTCAAAGAGATGTCTTTGTCATGTTTATTGTTGGAGGATGGATCAGCTATATATTGATCAGTTGTCTTTTAGGTGAAACTAAAAAGAAATTGGAACTGTGCTATTTGTATTCATGCCACTTGCATTGTTCAACGATACTTCCACACATTGTGTATGTGATCTGTCTCTAAAGTTCAGGATGTTGTTATTTATCCCGTAGGTCCTCCTTAGTGGAATTACTCTTGTATATGCTGGCATTCACCCCACATAAAGTACTTCTGGGAAAGTACGAGAAAGCTGTTTAGATGGCGTTCAGAGGCTGGCACCTAGAGTTGTGTCTAGTTCAACAACTGTTAACTCAACCAACTGCTGTCAATCCCTTATACCTTGTGTAATCAAGTAGTCGATTTGGTTCTGGGTTCAAGATCAGTCAACCCCTTAGTCAATTAGTCAACCAAGGGAAATATATTTGTGTTTTCTTTAAGAGTATGTCGCCTCTGTTTCCACAGGTGAAGTAAAATGTCTCACTGAATGTAATGACTGCGATATTCACCATGGTGGGTTTTGGGCTTGCAGTATATAGGAATCCTTTGTCCAGCGAAGTATTCTCTGTTGCTTTTAAAAAGTTCCAGTTCCGCTGACCAGTCAGTCCAGGACTCTGGGGTTTGGATCTCGAGGTTCTACAGTACTTGGTCAAAGTAGTGAAACAAGTCCAAATAACTAGCCACTAGCTCCCCACAGTGGTATCAATCACAATGGTTATCGGGTCCAGAACATTTGACCAATATTGTAACTCACTAGGTCCCCACAACATCTGGCACTGTGTGTTGAGGCTGGCGCAGACACCACTGTAGCAGTAGGAGGCACCTTCCTCGCAGGGCTCGCCGTTCTGCAGGAACACGTTGGGGGGGCAGTAGGGAGAGGCACCGGTGCAGTGCTCTGGGAGGTCACACTCCCCCAGGGGCTGCCGACACATCCATCCACCTGTACGCAGCTGGTTAGACAGAGACAATAGACAGTAAATCAGTAAAGGAGTTTATGATTTGGACCTTTGTTCAGTTTCATGTCACAGATCATGTATCAGTTTAGTTTATTAGGTTCACTATAAGCTATTGCAcaagcagaagctactcttcctggtgtccacataaaacatacaaatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatca

Function

NR:

description
disintegrin and metalloproteinase domain-containing protein 15-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557662.2 False 1811 mRNA 0.46 8 29557303 29563869
XM_021557653.2 False 1457 mRNA 0.49 8 29557303 29570811
TU150443 True 1596 lncRNA 0.52 1 29569180 29570775

Neighbor

gene id symbol gene type direction distance location
LOC110533728 LOC106605434 coding downstream 12424 29543049 ~ 29544879 (-)
mtx1a mtx1 coding downstream 16458 29523472 ~ 29540845 (-)
LOC110486192 LOC106605431 coding downstream 45149 29496867 ~ 29512154 (-)
hjv LOC106605430 coding downstream 68053 29478694 ~ 29489250 (-)
LOC110486122 LOC106605427 coding downstream 87265 29460944 ~ 29470038 (-)
si:dkey-7j14.6 LOC106605437 coding upstream 901 29571712 ~ 29575352 (-)
LOC110486243 LOC106605438 coding upstream 9041 29579852 ~ 29599325 (-)
LOC110486252 LOC106605439 coding upstream 32438 29603249 ~ 29639641 (-)
plin6 NA coding upstream 127848 29698659 ~ 29707941 (-)
LOC118938819 LOC106580151 coding upstream 137299 29708110 ~ 29709648 (-)
G130536 NA non-coding downstream 2337 29554490 ~ 29554966 (-)
G130558 NA non-coding downstream 8141 29548963 ~ 29549162 (-)
G130254 NA non-coding downstream 62380 29494577 ~ 29494923 (-)
G130252 NA non-coding downstream 63928 29493082 ~ 29493375 (-)
G130657 NA non-coding upstream 191560 29762371 ~ 29770692 (-)
G130671 NA non-coding upstream 218843 29789654 ~ 29789873 (-)
G130673 NA non-coding upstream 221153 29791964 ~ 29792173 (-)
G130674 NA non-coding upstream 221990 29792801 ~ 29793179 (-)
G130675 NA non-coding upstream 223541 29794352 ~ 29794580 (-)
LOC110534614 LOC106605399 other downstream 1079472 28475823 ~ 28533709 (-)
G129582 NA other downstream 1246571 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 1407317 27933389 ~ 28149986 (-)
G129250 NA other downstream 1790771 27766157 ~ 27766532 (-)
LOC110485245 ubr5 other downstream 2279179 27231538 ~ 27278158 (-)
LOC110486376 LOC106605451 other upstream 298235 29859575 ~ 29878744 (-)
c2h8orf37 cssa05h8orf37 other upstream 1318882 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 1326215 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 1621608 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 1626262 31196917 ~ 31199241 (-)
G130567 NA non-coding downstream 197 29568651 ~ 29568983 (-)
G130565 NA non-coding downstream 2862 29566107 ~ 29566318 (-)
G130564 NA non-coding downstream 3148 29565808 ~ 29566032 (-)
G130563 NA non-coding downstream 3888 29564961 ~ 29565292 (-)

Expression


Co-expression Network