LOC110486243 (LOC106605438)


Basic Information

Item Value
gene id LOC110486243
gene name LOC106605438
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29579852 ~ 29599325 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557692.2
TCACAAGTGTGTAACAAAGCTCTCAGCACAGCCAGACTCGCACACATTTAACACGCACTGTGCTCACATGAGGAAGTCCTCTTCAACAACAGATCCTTCCACATCCTCCGCCTCAATCTCCATCCAGGTATTCCAGCCGGTCCTGTTGAGAGGAGCACCCCCATCATGGCATATGGGAGCCTGGCCTGGAGTCTCTCTGCTCTACTGGGGCTTCTCCTGACCCCTTCACTAGGGTTGGAACCTCCACGGATCTCCTTCCCCCTTGAAAGCCCAGAGAGACCTCTTCCCTTATTCAGCCAACCAGACATTaaaaacaccaccacactgttgCTAAGTGACGACGGCTCCACTCTGTTTGTAGGGGCACAAGATGCTGTGCTCTCATTAGATGTCAGCCAGCCTGATGTCATAACCATGAAGACTAAGATGGAATGGAAGCCCCCTCCAGATGTTCTACACGAGTGTACCACTAAGGGCAAGAAAGAAACGACGGACTGTCCCAACTTTGTGCGAGTGCTGCAACCCATCAATGCCACCCACCTGTATGCCTGTGGAACATTTGCGTACAACCCTCATGATACCTATATGgaCACAGACACTCTCACCATGGCCAAAGTCCCCAGGAAGTACAATAACGGAAAAGGTTGCTGCCCGTTCAACCCATATCAAAGAAACACAGCCATCTCTGTTGatggTGAGCTTTTCACAGCCACGACAAATGACTTCCTGGGTAAGACACCAATGGTCTCCCGCCATCTCAGTAAAGATGGTCGCCCAGATGTTAGCCAGGATACTTCAGTGACCTTGAATGAGCCCACTTTCGTCAGTTCCGCATCTGACACCAGCGAGGGGAAGGTGTACTTCTTCTTCAGTGAAATTGGAAATGAGTACAGCTTCCTGGATGAGTTCAAAGTAGCGCGGGTAGCCCAGGTCTGCAAGGATGACATTGGGGGAGAGCGCATCCTGCAGAAACGCTGGACTTCCTTTGCTAAAGCCGAACTTCTCTGTCGGCCTCCCAAAGAGCTGCCTTTCAATATCATCCAGGATGTGTTCACCCTCGCTCCATCAGAGGGCTACTCCACACAAGATATTATTTTCTATGGTATCTTCACATCCCAATGGTCAGTGGCTTCAGGGCAGTCTGCTGTGTGTGCCTTTCGGCTTGGGGACATCAAAGATGTGTTTGCTGGGAATTACAAGATATTCCAAAACCACCAATGGAGTCCTCGCATGTACAAGACTAGCAACCTGGGCAAGTGTGGGTTGGCCAATGCCTCAGACACCACTCTAATGGCAGTCAAGGAAAGTTTCCTAGCCAGTGGAAGTGTGCGTCCGATAGGCAATGCACCAGTTCTCAACTCGCCTGACCAGCGCTACAGTCGGATTGCTGCACTACGGACAAAAGCAGCCAATGGACAGGACTACACCATACTCTTCCTGCTTAGTGAGTCTGGGTTTCTCCACAAAGCTGTGCTGTTGAACAAGGATACCCACATCATAGAGGAGATCCAAGTGTTCAGACAACCACAGCTGGTGAAAAACATACTTCTCTCCACCTCCAAGGGTGTGCTTTATGTGGGGACCTCTGAAGGGGTGACCCAGGTGCCTGTATCCCAGTGCTCGTCCTATAAGAGCTGTGCCCAGTGTGTTTTGGCACGAGACCCCCTCTGTGGCTGGGACCCTGCCAGAGGACACTGTGCCAGTGTGTCTGCCATTCCAGCCAATGCACGGCAGGATGTGGAGCATGGCAACGTGATGGAGTGTCAAGGTTCCCTCACAGCTAAACCTCTGCTAGTGGAGGTGCACGCACAGCTAAATGAAGTAGTGAGGTTGAAGTGTTCCAGATCCTCCAATCTGGCAACCCTGAGTTGGAAGTCCGCCAAAGCTAGCGCTCTGCCCCACCACCTCTTCTTTCACTCTGGAGATGAGAATCTGGTCTTCATGGCCACACCTGACACCTTCGGAATCTACCACTGCATCTCTGTTGAGAGGGGTTATGAGGAGACAGCAGCTATCTACACTGTGAGTTTCTCTCCTCAGGCCATTGATACTCCAGCCGTTCAATTTCGGATCACCACCACAGAGACTAAAGACCAGATGACCACTATGATGGAGATTCCAAGCGACACTGACCAGCTAGACCACATTAACTTTGGGGAGGATCCAGTCATCACCACAGACGTAACCACAACCGACAAGACTCCAAACACCAATTCCAGTACTGAGAAGCCAGAGGATATGACCCCAGACCCCCTTTCCAGCAGTGAGAAACCAGAAGACCACAATGAACCCTTAACAGCCAAGAATTACCATAGTGAATTGGTGGCAGTATCATTTctcctggctgtgtgtgtttgtgtgctagtGCTAGGAGGGCTCTATGGGTGCCACCTGCAGGGCAGATATAAATTGGGCCCATCGGACACTGCAGAGGGGGGATACAAGGAAGAGAATGACCCCCTGGAAGTCTCACCTCCCTCTATAAAGAAGGCAGAATGAATGGACTCAGAAGATATCtatcttcATCGAGAGTCAATTTTTTTCAACAGGCATTTGATGACATAACATCAGGTGGATTTAAGCTTGTTGAAGATTTATAAATAAGTAAATTAAAAAGTGTGTTTGGGAGGGGGGGTGAAGGGTAGGTTTATTTACACGTGGAGCCTATTTGTCTTCAACTTAAACAGACAGATAATGCACGTTTCTATTCATTTCAAATGAATACAATTTTTGTAATCCTACATTTCCTCAGCTGACATCTTTTTCTATAGGCTACAAAACAAGTGTCTTTATTTCTGTAGGAATGTTCATTCTCTTTTACTACGCCTACTATAATAAAAAGAAGAAATTACATTTCTGAATCTTTCACATCCCTTGGCTGTCACCAAATAATAGTGGACATGCATAAAGAATGCTGCCCCCAAGTACTTACCAAAAATGCCTCATTTCTCAGCTCTCCATCActgcttttaaaaaaaatctgcattAGCACAGTTAAAGATTCCAATTCTAGCTCATAGGCGGTAATTTGaaaaagtacagttgaagtcggaagtttacatacacttaggttggagtcattaaaactcgtttttcaaccactccacaaatttcttgttaacaaactatagttttggcaagtcg

Function

NR:

description
semaphorin-4A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557692.2 True 3144 mRNA 0.48 15 29579852 29599325

Neighbor

gene id symbol gene type direction distance location
si:dkey-7j14.6 LOC106605437 coding downstream 4500 29571712 ~ 29575352 (-)
LOC110486216 LOC106605435 coding downstream 9041 29557303 ~ 29570811 (-)
LOC110533728 LOC106605434 coding downstream 34973 29543049 ~ 29544879 (-)
mtx1a mtx1 coding downstream 39007 29523472 ~ 29540845 (-)
LOC110486192 LOC106605431 coding downstream 67698 29496867 ~ 29512154 (-)
LOC110486252 LOC106605439 coding upstream 3924 29603249 ~ 29639641 (-)
plin6 NA coding upstream 99334 29698659 ~ 29707941 (-)
LOC118938819 LOC106580151 coding upstream 108785 29708110 ~ 29709648 (-)
LOC110486325 LOC106605445 coding upstream 132593 29731918 ~ 29741258 (-)
LOC101268921 LOC106605446 coding upstream 143749 29743074 ~ 29752178 (-)
G130567 NA non-coding downstream 10869 29568651 ~ 29568983 (-)
G130565 NA non-coding downstream 13534 29566107 ~ 29566318 (-)
G130564 NA non-coding downstream 13820 29565808 ~ 29566032 (-)
G130563 NA non-coding downstream 14560 29564961 ~ 29565292 (-)
G130657 NA non-coding upstream 163046 29762371 ~ 29770692 (-)
G130671 NA non-coding upstream 190329 29789654 ~ 29789873 (-)
G130673 NA non-coding upstream 192639 29791964 ~ 29792173 (-)
G130674 NA non-coding upstream 193476 29792801 ~ 29793179 (-)
G130675 NA non-coding upstream 195027 29794352 ~ 29794580 (-)
LOC110534614 LOC106605399 other downstream 1102021 28475823 ~ 28533709 (-)
G129582 NA other downstream 1269120 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 1429866 27933389 ~ 28149986 (-)
G129250 NA other downstream 1813320 27766157 ~ 27766532 (-)
LOC110485245 ubr5 other downstream 2301728 27231538 ~ 27278158 (-)
LOC110486376 LOC106605451 other upstream 269721 29859575 ~ 29878744 (-)
c2h8orf37 cssa05h8orf37 other upstream 1290368 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 1297701 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 1593094 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 1597748 31196917 ~ 31199241 (-)

Expression


Co-expression Network