LOC118936731 (dcst2)


Basic Information

Item Value
gene id LOC118936731
gene name dcst2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29654875 ~ 29662028 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118936731
ATGGAGACATggtgcgcagagccggcgcaggatatcctgggccgtaATGTCTGTCGTCTGAtgaagaaggagaccaagTGGGCTCGTGCAGAGTTTGGGTGGGTTTTTGTTGGCCTATTCCTCGCCCCTGTGTACGGAATGACTGCACTGTTCATACAGAACCAAGGGCTGTGGTATTGCGTGTGTACCATGATCACCATAGCTTTCCTCTCAGCATTTGGCACGGGCCTCTCCATCTGCGTGCGTGCGAATGTTGTACTCATGATGCCAATGCTGTGTTCAATGAAGGGCAAGGacttcctcctgttcctcatCTTCTCCATGTTGGTCCAGGGCCCCATGACCAACACCCTGGAAAACTTTGACCGTGCAGCGGACAGCGTGGTGTGTGGGGCCGAACCTGCCACGAGCCAGACCCAGCAGGTACGTCTGTGGGCCATGCTTATTCTAGCACTGTCATTATTTGAAGACACTGTTAGTACAGTTACTGTATCTAACAATTTAACTCTCCAAATGAAGCCTTCCATTGATTTCTGTGCCCTCTGCCCCCTGTTACAGCTCGTTCCCTGAGAAACGTGTTACACTTCCTGGTCGGCATTGGCGAGGTGTGTAATGACAAACTGGGTACCCCCTGTAAGAAGTGTAACAAGCTATTTGATGATGCCCGTGATGACTGCATGGAGATCCTGTCTGTGTTCAACTTCCTTTGTCACATTGTGGATGGGTTCTGTCCCCTCTGTGGTCTCGCTTGAGTTGGTCAGCTGTTTTGCATCATCCCTTCTTACATTGTCGTCCACATGAAGACATAGATTGCTGCCCCAACCATAGCAGTTTTCGAGAAGATGAAGAAGGAGTTTGAGTTCAACATATCGGCCCCTATGCACTTTGACATGAATGTGAACAGCAGTCAGACGGTGCAACAGGTGTCATATGATGGAGGAAGTGTCGGTGGAGCTGGGACGTTTCTAGGACGTGATGGGTCTAATAGCCTACATAGGCCTCTTCCTTCTGCTGCTAATGTACCTACGgGCTGTCCTGTACAAACATAAGTACCTGCACCAGAATGACTTTGACAACACTTACATCACAGAGCAGTTTGAGGAGCTCAACGAGAGATTGGCTAGAGAGGGAAAACCCCCTGTCTAACCGCTCAGCCAGAGAGAGGCCCGCACCTACATCAGAGCATTCTCAGTGTACCTGACGGCCAGGGAGCAGTGGACGGCTGCCCTCAGCGCAGTGTCCATTCTCAGGCACATAGCCATAGGATGCCTGGGGTGGCGCTGGACCTGGTGGTCTTCTGGATGTTTGACCTGGTGCACTACCAAGCCCAGGGGGACATCGTGGCCAGAGGTGAGACACACCCCATCGTATTGGCAGTGGAAGTAAATGGCACAGGCAATGCCCTGGACATCTTCAAGGACATAGCAGCTGCCTTCGCCATTCTGCAGAAGGGCAGCATCACTGTTCTCAGCAAGAATTGTCTGATGAAGCCTTCAGAGCCAGACCACTCAGGATACATGCTCATAGGTAACACCTAG

Function

symbol description
dcst2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human DCST2 (DC-STAMP domain containing 2).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118936731 True 1538 mRNA 0.52 8 29654875 29662028

Neighbor

gene id symbol gene type direction distance location
LOC118944146 NA coding upstream 60659 29594164 ~ 29594216 (+)
LOC110486208 NA coding upstream 100929 29545045 ~ 29553946 (+)
LOC110534631 LOC106580029 coding upstream 176474 29424822 ~ 29478401 (+)
LOC110486083 LOC106605428 coding upstream 236578 29369835 ~ 29418297 (+)
LOC118937130 NA coding upstream 422154 29231578 ~ 29232721 (+)
LOC110486269 LOC106580132 coding downstream 17179 29679207 ~ 29685150 (+)
LOC110486279 LOC106605442 coding downstream 23827 29685855 ~ 29697686 (+)
LOC110486333 LOC106605448 coding downstream 103654 29765682 ~ 29768627 (+)
LOC110486369 LOC106605449 coding downstream 153752 29815780 ~ 29833805 (+)
LOC110486403 LOC106580236 coding downstream 238829 29900857 ~ 29914741 (+)
G130297 LOC106605438 non-coding upstream 73465 29577661 ~ 29581410 (+)
G130282 NA non-coding upstream 99970 29554407 ~ 29554905 (+)
G130291 NA non-coding upstream 107833 29546659 ~ 29547042 (+)
G130290 NA non-coding upstream 108359 29546285 ~ 29546516 (+)
G130345 LOC106581475 non-coding downstream 1982 29664010 ~ 29671945 (+)
G130335 LOC106580167 non-coding downstream 64523 29726551 ~ 29744867 (+)
G130410 NA non-coding downstream 123098 29785126 ~ 29785365 (+)
G130411 NA non-coding downstream 123676 29785704 ~ 29785943 (+)
G130424 NA non-coding downstream 137507 29799535 ~ 29799827 (+)
G130308 NA other upstream 13779 29600026 ~ 29641096 (+)
G129155 NA other upstream 169745 29484633 ~ 29485130 (+)
G128853 LOC106605419 other upstream 673587 28939899 ~ 28981288 (+)
LOC110485990 LOC106579931 other upstream 710485 28931988 ~ 28951235 (+)
G130414 NA other downstream 127548 29789576 ~ 29789831 (+)
G131491 NA other downstream 1038154 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 1086027 30748055 ~ 30749954 (+)
LOC110534710 LOC106605356 other downstream 1629442 31262054 ~ 31294577 (+)

Expression


Co-expression Network