LOC110486269 (LOC106580132)


Basic Information

Item Value
gene id LOC110486269
gene name LOC106580132
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29679207 ~ 29685150 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557732.2
TCTCCTCCCCATTCCTTGTCTGatgccagttttttttttttttttgtgtgtgtgtgtgggaggataCGAGATTCCAGCCAGGATGACAATGGAACGCTGACAAGAAAAGTTTCCTCTTGACTGGACAGACCAAAACGGACTCAATGGCGACCAAGTACTCAGATCTGGAGTTGGCATTGAACACCCTGGTAAGTCAGTTCCATGGTGCTGCAGCCAACAATGCCCCCACACTAACCACAGAGGAGTTCCAGACCCTGGTCTCCACACAGCTACCCACCCTTGATAAGACAGCAGGAGATGAACAAGGCTTGAGCCAGCTGCTGCAGCAGATTGGAGTGAAGGATGGAAGGGGGGTCTCCTTTGAGAACTTTTGGAACTTAGTCCAGACACTGGCCACCATTCAATACGGACAGAGGAGCCAGGAGAAGACAATCAAGTGTAATTGCGTTCTACAGTGAGGAGCTGGTCAAACATTATCTTGGGAAACCTACCACTTAAGGGAACAGTTTACTCCACCCAGAAAATCACACTTTAACCTGGGCCCCTCCACCCACCCCATCCTAGTATTCTAActccctaactcctcctccctGGCTGTTCACACCTGGTTGTTATGTGTCTGCCACAGAGAGGGTTAATAAAGTTGTAGGCCTATTGGATGGTTAAATGAAAGGTTTACATTATAGTCTTCTATTTCATCTGCAATTACCCAACATTATTATTTCAACTTCATTGTTATGTCAGTTCTTATGGATAATAGCATGCTATTTATGTTTTCATTATTTACATTGTTGTCACGCATATTAAAACCAACATGTCAAATGACTAGAAATGAAACATAGTATGTGTGTTATGTTCATGATAATTGTATAACTTGTTGAATAAAACTTTACATTTTGTTAC

Function

NR:

description
uncharacterized protein LOC109901824 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557732.2 True 903 mRNA 0.43 3 29679207 29685150

Neighbor

gene id symbol gene type direction distance location
LOC118936731 dcst2 coding upstream 17179 29654875 ~ 29662028 (+)
LOC118944146 NA coding upstream 84991 29594164 ~ 29594216 (+)
LOC110486208 NA coding upstream 125261 29545045 ~ 29553946 (+)
LOC110534631 LOC106580029 coding upstream 200806 29424822 ~ 29478401 (+)
LOC110486083 LOC106605428 coding upstream 260910 29369835 ~ 29418297 (+)
LOC110486279 LOC106605442 coding downstream 705 29685855 ~ 29697686 (+)
LOC110486333 LOC106605448 coding downstream 80532 29765682 ~ 29768627 (+)
LOC110486369 LOC106605449 coding downstream 130630 29815780 ~ 29833805 (+)
LOC110486403 LOC106580236 coding downstream 215707 29900857 ~ 29914741 (+)
gnrh-r LOC106605452 coding downstream 240586 29925736 ~ 29930354 (+)
G130345 LOC106581475 non-coding upstream 7262 29664010 ~ 29671945 (+)
G130297 LOC106605438 non-coding upstream 97797 29577661 ~ 29581410 (+)
G130282 NA non-coding upstream 124302 29554407 ~ 29554905 (+)
G130291 NA non-coding upstream 132165 29546659 ~ 29547042 (+)
G130290 NA non-coding upstream 132691 29546285 ~ 29546516 (+)
G130335 LOC106580167 non-coding downstream 41401 29726551 ~ 29744867 (+)
G130410 NA non-coding downstream 99976 29785126 ~ 29785365 (+)
G130411 NA non-coding downstream 100554 29785704 ~ 29785943 (+)
G130424 NA non-coding downstream 114385 29799535 ~ 29799827 (+)
G130427 NA non-coding downstream 120024 29805174 ~ 29806131 (+)
G130308 NA other upstream 38111 29600026 ~ 29641096 (+)
G129155 NA other upstream 194077 29484633 ~ 29485130 (+)
G128853 LOC106605419 other upstream 697919 28939899 ~ 28981288 (+)
LOC110485990 LOC106579931 other upstream 734817 28931988 ~ 28951235 (+)
G130414 NA other downstream 104426 29789576 ~ 29789831 (+)
G131491 NA other downstream 1015032 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 1062905 30748055 ~ 30749954 (+)
LOC110534710 LOC106605356 other downstream 1606320 31262054 ~ 31294577 (+)

Expression


Co-expression Network