LOC110486369 (LOC106605449)


Basic Information

Item Value
gene id LOC110486369
gene name LOC106605449
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29815780 ~ 29833805 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557906.2
CTCCCCACCCCCGCTGCGACGCTCCGCGTCTTCTAAACTAGTGGTTGCGGGAGGGATACgggtgaagagggggagggggagagaggctcGACGTTATCACAATATCGGGGGGATATTACAGACTGAAGTCTGGCTTTTATATCAGAAAAAAAACATATGCCAAATGGATCTGAATTAAACTTGTTTCATCCATGGTTCACCAGCTTCCTCTTGAAGATGGCCAGTCAACGCTAAGCTAACTAGCTGGGTGTAGCAGATTTGACTGGAAGAAGAGGTGCCAAAGGCACCATGGGAGATGGAGGAGCCCTCCATACAGAGGGGAACGCCCTCCTCAAAGCCGTCTTCCAGGGCAAGCTGCGACTGACCCGGCTCCTCCTGGAAGGGGGTGCCTACATCAACGAAGGCAACGAGCGGGGCGAGACCCCCATctctgctgcctgcctggctggctacGAGGACCCCCAGAGCCGCCAGAGGATGGTGCGCTACCTCCTGGAGAAAGGAGCCGATCCCAACATCCCAGACAAGTCTGGGCGGACCTCCCTGATGCATGCCTGTGTCGAGCAGGCGGGCAAAGAGGTGGTGTCCCTGCTCCTAGAGAATGGAGCTGACCCCAGCCTCAAGGACTACACAGGCTCCTCCGCCCTGGTCCATGCCATCAACAGAGGTGACAGAGACACCCTCCAGGTCCTGCTGGATGCCTGCAAGGCCAAGGGCAAGGAGGTAATCATCATCACCACCGACACGTCACCCTCGGGCACCAAGAAGACCAAGCAGTATCTCAACTCCCCCCCATCACCAGGGGTGGTGAACACGCTCTCACCCGTGGCCTGCATGTCACCCTCAGAGGTAGCGATCCGGACCTCCAATTCCCCAGCAGCAGAGAAGGTTGAGGAGGAGGACAGTATCTTTAGCTTTGCGCTGACATCAGCCTTACCCCTACCCTCCACTAGAACCGTAGGGGAGAAAAGGCCGCCTCCCCGCAAACTCCTGAAGAGGCTCAACTCTGAGCCTTGGGGGCTGGTAGCACCCTCAGTGCTCAGCAGGGTCCCACAGGAGAGGGTTGATGGTGGACTGGAGGAGGAAGGTGGAGGTAGGATCATCACTGAGATTAATGGTCTGTCAATCTCGGGTCCTGGCAGGCCTCTCCTGTCTCGTCGGCATAGCATCGAAACACATGACCCCTGCTCGCCCAAACTCATTGACCGATCCTGCTCAGAGGACTGCGCAGCCCTTTGTAGCTCCTCCTGGGCCGACAAGGTCCAACAGCACCAGATCCTGTACCGCAGGAACACCGCGCCGGAGTCTCAGGAAAATGCAGGCGGACCAGGGGGGGTGGCTTCACGCACCCTGACTCACCCCAAACTTACACGTATGGAGCACTATGAGTCAGACACACACCTGTGTCCTGAGTCCATCCCTGGATCTCCAGACTCGGGGCGCGTGTCTGTGGAGCGGAGGAAGTACAACGCCTcgcccctctctcttctcaccacctCCTCCCGGGAGTCCCTTGAGAGCATCCCCAATTCTGTCTCCCCCATCACCATGCGCAGACGGCCCCCAGGCCTCCTGGAGCGCAGAGGCTCAGGCACCCTCCTCTTGGACCACATCTCCCACACCCGCCCCGGGTTCTTGCCCCCACTCAATGTCAACCCCCACCGGCCCATCCCAGACATCCGGGCCAATGGCAAGCCTACTTCCCCCGTCCACTCTGGTCCCAAGATCCTGGTTCCAGTTGCCCCTGCCTCACCCAAGAGAGGCCCAGACTTCAAGATGAAGAAGAAACTGATGAGGAGGCACTCCATGCAGACGGAACAAATGAAGCAGCTTTCCACCTTCCAGGAGATCCTGACAGAGAAGGTCATTGAGTCCAACGGGGACTGAGACATAAAAGGACATGTGAGGGTACAGTGGTGGATCAATTAGTCTATCTAATTAGTCCATCATTATCCTCAACCAGTGCTTAAACCAGGACTACTAACGTGAATTTGGTTCATTCAGAGTGAGGCCTCAGTCCCATCCTTGTTCTGTGTCAAGTGCAGatggttatttttatttttaggtGACCTATTTTAATTTGTTGTGTTTCCTTTCTGTGCTGTCACAGAAAGCTGGTTGATTGAGTAATACGGTATACAGCAGATGTTCTTTTCATTTCTCCTCAAATTATTTATTAATATACCCATTTACAGTCAACAGAAATAGAaacgtatttctgtgtttttagATGTTTACACACTGCAAAATGTGTACCAATGTCATGCCTACTGTTCCGTGTGCTGAAGACATTTTCTTCCCTTCTGAAATCAGTCACCTTATCTATCTATGACACTTTaagtcaaaataaaaaaaatcaacagTAGAGATGCTAGCAACAGCTTACCTTGTCATTCTGAATGCCCTGTCTTCCCGATGTTCAATTCTTGCGTTAGCTGCTTTAAAACGTCAAACTTCAATCCTAAAATGCTCTCATGTTGATGGGTTTGTTTGGGGGAGAATAATGCTGCATTCCATGAAATAGTTTTCAAGACATATTGCCCAAAAATGTCACTGTCATTGTATTGTTGCTGTTATCTACTTTCACTGTATTTATTTGCCTTTACCTTTTAATCACTTGAGATTTTGTGTTTTAGAGAGCAATTTAGCTATATGGTCTAACCACACGCCTGACTTACCCTGACAACTACAGTGGGATCAACATGTGGGACTCTTTATGAGTATCACACTGTAATAATGTTATTATCAATTgattaaaaaaatttaaaaaataagtcAATTGAGGTGCAATTAATTTCATACTAAATTCCAAAGAAATCCCATGAAAGCATGTTTGTTTACATTGGAGTGTGTGAATACTGTTAGATGGCTTTTAGAAGAATTAACCTCAAATAATTGCACATTGACGCTGTGCCTTTCCATATGGAAAGAGCTCCTAGCACATATTAACTGTAAATAATGTAAAGATAAGACAAACCTAATTTGCTTATGAAATATGTCCATGTGCAATATGCTGTACTGTAATGTCAATGGATTTCCTTCATCTATGGTGGATGTGAAGTTGTCTTTACAAATTGTACATTAAAAGCAATCTGAAGCACTTCTTAACATTTACTGTACACAGATTTGCCGAAAGGGAGAGTTTTAGGCTCACAAAACTAACATTTACAGTTACTTACACATTTAGATTGTCACTTTTAAATAATTCCCATTTGTATAGTGAGATTTAAGAGAAAAAAAGTTAGAAAATGTTTACCAAGCTTACAATGTGACTGCTTGTCCCGCTTCCATTTCAAATATTTCTGTCTTTAATGAAATAATGTGTATGTGCTACAAGGTTTAATATTGACCTCCTGTCGATTGAACTGTAATGTAGGTTCCTTGAAGTTTAAGAGaaatacaaacaaaaaatacatatttttgtatGCCTGTTAGGAAATAGCAAAGTAAATTCTAATATGTAATCTATTTTCACGTTTGAACTTGATTGTAATTTGATTGTGaaataaacatttgttaaatgttcGTAAGTGAATTATA

Function

NR:

description
ankyrin repeat domain-containing protein 34A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557906.2 True 3540 mRNA 0.47 2 29815780 29833805

Neighbor

gene id symbol gene type direction distance location
LOC110486333 LOC106605448 coding upstream 47153 29765682 ~ 29768627 (+)
LOC110486279 LOC106605442 coding upstream 118094 29685855 ~ 29697686 (+)
LOC110486269 LOC106580132 coding upstream 130630 29679207 ~ 29685150 (+)
LOC118936731 dcst2 coding upstream 153752 29654875 ~ 29662028 (+)
LOC118944146 NA coding upstream 221564 29594164 ~ 29594216 (+)
LOC110486403 LOC106580236 coding downstream 67052 29900857 ~ 29914741 (+)
gnrh-r LOC106605452 coding downstream 91931 29925736 ~ 29930354 (+)
LOC110486448 cr3l4 coding downstream 244843 30078648 ~ 30083392 (+)
LOC110486462 NA coding downstream 263366 30097171 ~ 30103693 (+)
LOC110486473 LOC106605459 coding downstream 281730 30115535 ~ 30168611 (+)
G130427 NA non-coding upstream 9649 29805174 ~ 29806131 (+)
G130424 NA non-coding upstream 15953 29799535 ~ 29799827 (+)
G130411 NA non-coding upstream 29837 29785704 ~ 29785943 (+)
G130410 NA non-coding upstream 30415 29785126 ~ 29785365 (+)
G130335 LOC106580167 non-coding upstream 70913 29726551 ~ 29744867 (+)
G130419 NA non-coding downstream 6654 29840459 ~ 29840782 (+)
G130451 NA non-coding downstream 22171 29855976 ~ 29932819 (+)
G130468 NA non-coding downstream 46507 29880312 ~ 29891518 (+)
G130479 LOC106605450 non-coding downstream 58468 29892273 ~ 29900179 (+)
G130414 NA other upstream 25949 29789576 ~ 29789831 (+)
G130308 NA other upstream 174684 29600026 ~ 29641096 (+)
G129155 NA other upstream 330650 29484633 ~ 29485130 (+)
LOC110534631 LOC106580029 other upstream 337650 29424822 ~ 29478401 (+)
G131491 NA other downstream 866377 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 914250 30748055 ~ 30749954 (+)
LOC110534710 LOC106605356 other downstream 1457665 31262054 ~ 31294577 (+)
eaf1 LOC106581241 other downstream 1526631 31360408 ~ 31366322 (+)
G132342 LOC100136303 other downstream 2023843 31834170 ~ 31887572 (+)

Expression


Co-expression Network