gnrh-r (LOC106605452)



Basic Information


Item Value
gene id gnrh-r
gene name LOC106605452
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29925736 ~ 29930354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>NM_001124351.1
CATAAAAACTTTGATGTGTATATGATAATAATGTATGTAATCACGATAATGACATACATGTTTTACTTTGTCATCTACAGTCATTCATATAAACCTTGTCTTTTCCAACCCAGGATGTCTGGCAACCTGTCCCTCCTGAGGCCTCCCTTAGTGGGTGCCACCGGGTCAATGCAACCCGCCCTCTCAAACATGTCCCAGTTTCCACCTCTGGTTGACTGGGAGGCGCCCACCTTCACCCGAGCTGCCCAATTCCGTGTCGGCGCCACCTTAATCCTCTTCCTATTTGCTGCCTGCAGCAACCTTGCGTTATTGGTCAGTGTGTGCCGGGGGCGTGGCCGGCGCCTGGCTTCTCACTTGCGACCACTCATCATGAGCCTGGCCACCGCCGACCTGATGATGACCTTTGTGGTGATGCCACTGGACGCCATTTGGAACATCACGGTGCAGTGGTATGGCGGAGACGCCATGTGTAAGATGCTGTGCTTCCTCAAGCTGTTTGCCATGCACTCGTCAGCCTTCATCCTGGTGGTGGTCAGTTTGGACAGGCACCACTCCATCCTGCACCCGCTGGACTCACTCAACTCCCACCACCGGAACAAGAGGATGCTGGGTCTGGCCTGGGGCCTCAGCGTGCTTCTGGCCTTACCACAGCTGTTCATCTTCCGGGCCATCAAGGCAGAGGGCGTAGATTTCACCCAGTGTGTGACCCATGGCAGCTTCAAAGAGCGATGGCAGGAGACGGTCTACAACATGTTCTACTTCGTCACTCTCTACGTGTTCCCCCTGCTGGTCATGAGCTTCTGCTACACACACATCCTTATTGAGATCAATCAGCAACTCCACAGGAACAAAGCTGGCGAGTCCTGCCTGAGGCGCAGTGGCACAGACATGATCCCCAAAGCACGAATGAAGACTCTAAAGATGACCATCATCATTGTGATGTCCTTCGTGGTCTGCTGGACGCCCTACTACCTCCTGGGTATCTGGTACTGGTTCCAGCCGGAGATGCTGCAGGTCACGCCTGAATACATCCACCACGCCCTGTTTGTCTTCGGCAACCTGAACACATGTTTTGACCCGGTCATCTATGGCTTCTACACGCCCTCGTTCCGGGCCGACCTGGCCATGTGCTGGTGCTATAGAAGAAGGGACATTAATATGTCGCCCAGGTCTCTGGACCGCCTGTCCGCCCACCAGGGCCCCCACAGTGGAGAGCAGGACTCTGACGCCCCCGGTGTGGAACAGACCAAAGAGACTGGAGGTGACGGTAGATGACTGGCGCTGACAGTAAGTACATCTGTAAGGTTGGAGGGCTGAGGGAGAGCAGACCTGGAAATGAGCGCTACTAGGGAGTATGTAGACCGATCTACTTATTCTGTGAGGTGAAGACAGTGACAGGCTAAACAGCACCGCCAAAATGTCTCCCCTCTGATTGTACGCCCATCTTTGACATTTTGAGGACATTGATGATCTCGATAGCCACACATCACTATACAGAACTGTCAAATTACAAACACATTTACAAATGCATTTGATGGTACAATAAAATGGTTGGTCGTTTCACTCGGAAGACAAACA

Function


NR:

description
unnamed protein product

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0097211 cellular response to gonadotropin-releasing hormone biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004968 gonadotropin-releasing hormone receptor activity molecular_function

KEGG:

id description
K04280 GNRHR; gonadotropin-releasing hormone receptor

RNA


RNA id representative length rna type GC content exon number start site end site
NM_001124351.1 True 1578 mRNA 0.53 3 29925736 29930354

Neighbor


gene id symbol gene type direction distance location
LOC110486403 LOC106580236 coding upstream 10995 29900857 ~ 29914741 (+)
LOC110486369 LOC106605449 coding upstream 91931 29815780 ~ 29833805 (+)
LOC110486333 LOC106605448 coding upstream 157109 29765682 ~ 29768627 (+)
LOC110486279 LOC106605442 coding upstream 228050 29685855 ~ 29697686 (+)
LOC110486269 LOC106580132 coding upstream 240586 29679207 ~ 29685150 (+)
LOC110486448 cr3l4 coding downstream 148294 30078648 ~ 30083392 (+)
LOC110486462 NA coding downstream 166817 30097171 ~ 30103693 (+)
LOC110486473 LOC106605459 coding downstream 185181 30115535 ~ 30168611 (+)
gon4l LOC106605460 coding downstream 249631 30179985 ~ 30205554 (+)
LOC110534650 LOC106580339 coding downstream 275346 30205700 ~ 30209797 (+)
G130479 LOC106605450 non-coding upstream 25557 29892273 ~ 29900179 (+)
G130468 NA non-coding upstream 34218 29880312 ~ 29891518 (+)
G130419 NA non-coding upstream 84954 29840459 ~ 29840782 (+)
G130427 NA non-coding upstream 119605 29805174 ~ 29806131 (+)
G130773 NA non-coding downstream 63563 29993917 ~ 29994140 (+)
G130879 NA non-coding downstream 224942 30155296 ~ 30156840 (+)
G130906 NA non-coding downstream 299061 30229415 ~ 30229738 (+)
G130907 NA non-coding downstream 300084 30230438 ~ 30230681 (+)
G130414 NA other upstream 135905 29789576 ~ 29789831 (+)
G130308 NA other upstream 284640 29600026 ~ 29641096 (+)
G129155 NA other upstream 440606 29484633 ~ 29485130 (+)
LOC110534631 LOC106580029 other upstream 447606 29424822 ~ 29478401 (+)
G131491 NA other downstream 769828 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 817701 30748055 ~ 30749954 (+)
LOC110534710 LOC106605356 other downstream 1361116 31262054 ~ 31294577 (+)
eaf1 LOC106581241 other downstream 1430082 31360408 ~ 31366322 (+)
G132342 LOC100136303 other downstream 1927294 31834170 ~ 31887572 (+)

Expression



Co-expression Network