LOC110486448 (cr3l4)


Basic Information

Item Value
gene id LOC110486448
gene name cr3l4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30078648 ~ 30083392 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558068.2
CATCCGCCGTGTCAGTATGGTTATTCGGCCTCCGGGATGATTGACATGAGAATTGCCAGCTGGATTTTTGGGAGAAATGCGTTTTACACTGGTTGATCTTTAAACACTACTCGTCTGCATTTTTCTCCTCACGTTGGGCCTTCTATTGTTGGGGCCTTCTATTGTTGTAATGCTCTTGAAGTAGacctatatatatactatattcgGAAGAATCATCGTTTCTGAAAACAGCAGCAGACAAGACATGGATATAGAGAATGGAGAGCTGTTTTTCCGTCACAAAGAGGACAGTATGACAGAGGAGAGTTGGGGACTGGAAGGGCCATTTTCTTGCTCTGATGTTATCTATGCTGGCTCTGAAAAACCCCTAGATGAATGCACGGTAGACCCCCAAAGTGGTCTAAACGACAGTGAGCCAGAGGATGTGCTTTATGCCATCAATCCAAATGACGTCTTCCCTACCAGAGACCCAGTGGAGACCTCCTCAGAGAGCGACAGTGGCATCTCTGAGGAACCCTGCTCCAAGAGCCCCCTAACTGCCACGGTGGACCCCTCTCAGGTCCCCACAACTATCTATCAGGTGGTCTATGACATCAGCACCCTGGCCAACATCAAGACGGAGCCAGAGCAGCATAGTGTTGATGTCATTTCCATAGaactggATGATTGGAGTTCTCAGATGTTGATCTCGGAGTCCTGTATCGTCAACGAGTTACCCCTAGTATCCGCTAGTAGATTTGACCATGGTCATCTTTCTACCCACTCTGGTACCACCTCAGGTCCCACCAGTCCAGACAGCCCGCTGCTTTACCCTGACCTCACACTGACTGAGGAGGAGCAGAAACTGCTGAACCAAGAGGGGATCTCTCTGCCCAACAACCTGCCCCTCACcaagGCTGAGGAACGGATTCTGAAAAAAGTGAGACGCAAAATACGCAACAAACAGTCAGCCCAAGACAGCCGTCGCAGGAAGAAGGACTATGTGGATGGGCTTGAGAGCAGGGCAGCAGCTTGCTCAGTGCAAAACAAAGAGCTGCAGAGGACCGTGGAACAGCTGGAGAAACACAACATGTCTCTCCTGGCTCAGCTGCGCAGACTACAGTCGCTGATCAAGCAGACGGTCACTAAAGCAGCACAGACCAGCACCTGCGTCATGATTATCATCTTCTCTCTGGGCCTCATCATCTTCCCAAGTTACAGCCCCTTCCACTGGGGCGCCTCATCCATAGAAGAGGACTATACACCAAAAGGAGTTATCTCCAGAAGCATCCTCACAGATCCTGCTTCATCCTTGCAAGCTGCTGAGGATGTGGACAACCGTATCATTCAGCCCGATTCCCTACCCGTTTCCCGTGACCTCAGCCAATCAGATCCCCCGGATGCTTCCATAATACTAAAGCAACCAATAGAAAGTCCCAAAATCACTGACATTGAGGATGTGGCCCTGGAGGagagccaaccagggaacagctCGACTCTGGATGAAGGGCAGACTGAACCTCTGGCCCTGGTGTCAGCAACAGGAAAAGGGAGCGCAAGCCTTGACCCCACCAAACCAGCCCACACTGATGAGATGTAGACATTGTTGATGAACTAGTTTGACTACATTCCTTTTGCTTTATAGAGCTCTTCAAAGCTCCTTGAATTCATTATGAACAATGGACAAGTCCAATATGCTGCCCCATTACCacattgtttttcaacaagacccCTTTGGGTGCCTTCAATGCCTAACCATTGCCTTACTCTTTTTTGGTGCTGTGGTGCAAACAAAGTCTAATCTGGGATTCGGTGGAATAGTcctcaaaatggattaaacattTTTGACTGTTTTGACTTTTCTATTTAAGCACCACTTCTTAATGTTTGTATGGTAAAGATTTCTGTACATTTCTAACTTTGAACTCCGAGGAGTTAGTTAGTACATCCTGTGGGAAGGATGAAGGTTGTTAGATTGTAGCCTCAAAAACACCACAGATATGAATATATTGTTTTGGCTATGCATTCTTTCAGCAAGTCTTAgtgtacaccacacacactccttGAAAGTGAGCCTACACCGATGGATTATGTTTTGGACTAACTAACTACTCGTGTGCAAACTGTTTGTGAAACTGCCTAGCTAGTTTCTGACTGGCATCTGTGCTTAATGTAGTTTGCAGCTCCCATAACTGAATGCTGAGAGACTCATTTGGGACTGTAAGCAAACTGTCATATCTTTTGCGtgcacttaaaaatgtcctttgGCCCTCATTCAGTTAAGAGGTAAACAGTGTGTACAATCCAAACATGTCCTTATCTTAAGCATGGAATTGTGGTCCAAATGTATACTCTTCACAGAACTTGCTATCCTAATTTTAGTGTTTGCTGGTGTCCTATTTTATGTGCTTTACTTTACTTTTTATATTTATTAAATGGGAACAATACTGGTTTTGCTTTATGGTAATTAAATAGCCGACCTGAA
>XM_021558076.2
CATCCGCCGTGTCAGTATGGTTATTCGGCCTCCGGGATGATTGACATGAGAATTGCCAGCTGGATTTTTGGGAGAAATGCGTTTTACACTGGTTGATCTTTAAACACTACTCGTCTGCATTTTTCTCCTCACGTTGGGCCTTCTATTGTTGGGGCCTTCTATTGTTGTAATGCTCTTGAAGTAGacctatatatatactatattcgGAAGAATCATCGTTTCTGAAAACAGCAGCAGACAAGACATGGATATAGAGAATGGAGAGCTGTTTTTCCGTCACAAAGAGGACAGTATGACAGAGGAGAGTTGGGGACTGGAAGGGCCATTTTCTTGCTCTGATGTTATCTATGCTGGCTCTGAAAAACCCCTAGATGAATGCACGGGTCTAAACGACAGTGAGCCAGAGGATGTGCTTTATGCCATCAATCCAAATGACGTCTTCCCTACCAGAGACCCAGTGGAGACCTCCTCAGAGAGCGACAGTGGCATCTCTGAGGAACCCTGCTCCAAGAGCCCCCTAACTGCCACGGTGGACCCCTCTCAGGTCCCCACAACTATCTATCAGGTGGTCTATGACATCAGCACCCTGGCCAACATCAAGACGGAGCCAGAGCAGCATAGTGTTGATGTCATTTCCATAGaactggATGATTGGAGTTCTCAGATGTTGATCTCGGAGTCCTGTATCGTCAACGAGTTACCCCTAGTATCCGCTAGTAGATTTGACCATGGTCATCTTTCTACCCACTCTGGTACCACCTCAGGTCCCACCAGTCCAGACAGCCCGCTGCTTTACCCTGACCTCACACTGACTGAGGAGGAGCAGAAACTGCTGAACCAAGAGGGGATCTCTCTGCCCAACAACCTGCCCCTCACcaagGCTGAGGAACGGATTCTGAAAAAAGTGAGACGCAAAATACGCAACAAACAGTCAGCCCAAGACAGCCGTCGCAGGAAGAAGGACTATGTGGATGGGCTTGAGAGCAGGGCAGCAGCTTGCTCAGTGCAAAACAAAGAGCTGCAGAGGACCGTGGAACAGCTGGAGAAACACAACATGTCTCTCCTGGCTCAGCTGCGCAGACTACAGTCGCTGATCAAGCAGACGGTCACTAAAGCAGCACAGACCAGCACCTGCGTCATGATTATCATCTTCTCTCTGGGCCTCATCATCTTCCCAAGTTACAGCCCCTTCCACTGGGGCGCCTCATCCATAGAAGAGGACTATACACCAAAAGGAGTTATCTCCAGAAGCATCCTCACAGATCCTGCTTCATCCTTGCAAGCTGCTGAGGATGTGGACAACCGTATCATTCAGCCCGATTCCCTACCCGTTTCCCGTGACCTCAGCCAATCAGATCCCCCGGATGCTTCCATAATACTAAAGCAACCAATAGAAAGTCCCAAAATCACTGACATTGAGGATGTGGCCCTGGAGGagagccaaccagggaacagctCGACTCTGGATGAAGGGCAGACTGAACCTCTGGCCCTGGTGTCAGCAACAGGAAAAGGGAGCGCAAGCCTTGACCCCACCAAACCAGCCCACACTGATGAGATGTAGACATTGTTGATGAACTAGTTTGACTACATTCCTTTTGCTTTATAGAGCTCTTCAAAGCTCCTTGAATTCATTATGAACAATGGACAAGTCCAATATGCTGCCCCATTACCacattgtttttcaacaagacccCTTTGGGTGCCTTCAATGCCTAACCATTGCCTTACTCTTTTTTGGTGCTGTGGTGCAAACAAAGTCTAATCTGGGATTCGGTGGAATAGTcctcaaaatggattaaacattTTTGACTGTTTTGACTTTTCTATTTAAGCACCACTTCTTAATGTTTGTATGGTAAAGATTTCTGTACATTTCTAACTTTGAACTCCGAGGAGTTAGTTAGTACATCCTGTGGGAAGGATGAAGGTTGTTAGATTGTAGCCTCAAAAACACCACAGATATGAATATATTGTTTTGGCTATGCATTCTTTCAGCAAGTCTTAgtgtacaccacacacactccttGAAAGTGAGCCTACACCGATGGATTATGTTTTGGACTAACTAACTACTCGTGTGCAAACTGTTTGTGAAACTGCCTAGCTAGTTTCTGACTGGCATCTGTGCTTAATGTAGTTTGCAGCTCCCATAACTGAATGCTGAGAGACTCATTTGGGACTGTAAGCAAACTGTCATATCTTTTGCGtgcacttaaaaatgtcctttgGCCCTCATTCAGTTAAGAGGTAAACAGTGTGTACAATCCAAACATGTCCTTATCTTAAGCATGGAATTGTGGTCCAAATGTATACTCTTCACAGAACTTGCTATCCTAATTTTAGTGTTTGCTGGTGTCCTATTTTATGTGCTTTACTTTACTTTTTATATTTATTAAATGGGAACAATACTGGTTTTGCTTTATGGTAATTAAATAGCCGACCTGAA

Function

NR:

description
cyclic AMP-responsive element-binding protein 3-like protein 4 isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09048 CREB3; cyclic AMP-responsive element-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558068.2 False 2464 mRNA 0.46 10 30078648 30083392
XM_021558076.2 True 2449 mRNA 0.46 10 30078648 30083392

Neighbor

gene id symbol gene type direction distance location
gnrh-r LOC106605452 coding upstream 148294 29925736 ~ 29930354 (+)
LOC110486403 LOC106580236 coding upstream 163907 29900857 ~ 29914741 (+)
LOC110486369 LOC106605449 coding upstream 244843 29815780 ~ 29833805 (+)
LOC110486333 LOC106605448 coding upstream 310021 29765682 ~ 29768627 (+)
LOC110486279 LOC106605442 coding upstream 380962 29685855 ~ 29697686 (+)
LOC110486462 NA coding downstream 13779 30097171 ~ 30103693 (+)
LOC110486473 LOC106605459 coding downstream 32143 30115535 ~ 30168611 (+)
gon4l LOC106605460 coding downstream 96593 30179985 ~ 30205554 (+)
LOC110534650 LOC106580339 coding downstream 122308 30205700 ~ 30209797 (+)
LOC110486492 LOC100194668 coding downstream 127091 30210483 ~ 30214827 (+)
G130773 NA non-coding upstream 84508 29993917 ~ 29994140 (+)
G130451 NA non-coding upstream 145829 29855976 ~ 29932819 (+)
G130479 LOC106605450 non-coding upstream 178469 29892273 ~ 29900179 (+)
G130468 NA non-coding upstream 187130 29880312 ~ 29891518 (+)
G130879 NA non-coding downstream 71904 30155296 ~ 30156840 (+)
G130906 NA non-coding downstream 146023 30229415 ~ 30229738 (+)
G130907 NA non-coding downstream 147046 30230438 ~ 30230681 (+)
G130921 NA non-coding downstream 171091 30254483 ~ 30254722 (+)
G130414 NA other upstream 288817 29789576 ~ 29789831 (+)
G130308 NA other upstream 437552 29600026 ~ 29641096 (+)
G129155 NA other upstream 593518 29484633 ~ 29485130 (+)
LOC110534631 LOC106580029 other upstream 600518 29424822 ~ 29478401 (+)
G131491 NA other downstream 616790 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 664663 30748055 ~ 30749954 (+)
LOC110534710 LOC106605356 other downstream 1208078 31262054 ~ 31294577 (+)
eaf1 LOC106581241 other downstream 1277044 31360408 ~ 31366322 (+)
G132342 LOC100136303 other downstream 1774256 31834170 ~ 31887572 (+)

Expression


Co-expression Network