LOC110534650 (LOC106580339)


Basic Information

Item Value
gene id LOC110534650
gene name LOC106580339
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30205700 ~ 30209797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110534650
AATGCAGAGCAGTGAGAGGTAGTGAAAAGCAGAGGAtatcagctacagtatatagctATTGGGAGCAATTAATTCTGCTGCGATGGGTACCTTGGGTCCATTTAGCCTGTTCTTGCTTTTTGCGTTGTCTCAGCAGAACGTCTTTGTAGCCGCCAGCGACGTGCTCGAGCTCCGGAATTCTGATTTCGATTACACGGTAGCAGAGTGTGGTCACCGCCAGCAACTAGCCCCAGAATATGAAACTGCAGCAACAAAACGAAAAGGGACAGTATCTTTAGCTAAAATAGACTGCACAGTGAACTCTGAGACGTGTGGACGTTTTGGCGTCAATGGGTACCCCACCACACTCAAAATCTTGCGCAATGGAGAGGACTTTGCTGCTTATGATGGACCCAGGAGTGCAGGTGGCTACTTTAAAATCATTGCTGCTCTggtttgtgtctgtgtttttaGTGTATGTATGACTCATCTAATGTTGTCCCATGTTCCCATATATGGCATTGTGAGCTTCGTGAAAAAACAGGCAGGTCCCAGTTCCATTCCTCTGCACAATGAGAGAGACCTGGATGCATTCAACAATTTTGAAGCCAGTGTGGTTGTTTTTTTCTCAGGTGCTGACAGCTCTCAGATGGCTGAGTTTTTGAAGGCGTCTAGTGCAATGAGAGACAGCCACCGCTTTGCCCACACTGCAAACCTGAGCCTGGGCCTCAAACACGGCGTGGAATCAGAAACGGTGGTGCTCTTCCGGCCCCCACGACTCAACAGCAAGTTTGAGGACAGCGTGATGATGGCATGGGGCAAATTCACTTAGTCCCTATAAACCTGATGGCCAgctggtgagggccacagcacgGGGAAAGAAACTGCTCTTACCTgatatccacctctctctttttctctctccatcactttcACTACCCCATCTTTCTCCCTAGGGTGATGAAAGTGACCACTCAGTTCCAGTCTCAGGGGCTGAGTTACGCTGTGGCCAACAGAGCAGAGTTCCAGGATGAGCTGGAGGAGGAGTTTGGCCCAGGGGAGAGCTACCTCTCATCACCATCAGGAACAGGGAGGGCCACAAGTACAGCATGCAGGAGGAGTTCACACGGGACGGGAAATCCCTGGAGAGGTTCTTGGAGGACTACTTTGCTGGTAAACTGAAGAGACCGGTCTGCTATTTTAATCTCATCTGTTGTTGTCCTTCTTCCCAGTTTCCCCGCTATTTTCTTCGTCTCAGCAGGACAGAAGGACCAACCTCGGAAATACAAGGGTGGCCGTGAGGTGAATAATTTCCTCAAATATCTGAAGGAGGAGGCCACACATCCCCTTGTCCTGGGCACTGCCAGAGAAGACTTGTGAGAGCGcaatgaagagagagaagaaaaaacaaGGGATGAGTTGGTGGACTGGCAAAGAAGCAGAAGACATGAACTATAAGGGGGAAAAAGGAGCCATCCATTGCAATACACAGTTTCCCGAACAGAAGATCTCCTTTGGGTTTCTGTGCCTTACCAGCAACACTGAATACTCATAACATAGAGGACttctaaataaaaaaatctgcagtttttTCATGGGGCTTCAAAAGAGTAATGTTCTCAATGTGAGAGGATGGAGCATCTGCAAGTACAGTAATAGGCAACATGTGCAGATTGGTTTTGCAGTTAAACTGGTGACTTGGTGGTTGCTATTAATATTCCCAAGAAAGGCATACTAGTGTAGCGTCCTTGACTCTGAGTAAGGTACCTCAGTCAGACTATAGATAAATGTAGAAAATGAAAAATTATGTGCAACAGTTTTTGCAAAGTTGCTTACGGGTACAAATAAAAAAGTGCCTGCTAAGCAAATAGATAAAAATAGAATAAAATGTCTGATacaggggcctcccgagtggtgcagcggtctaaggcactgaggcgtcactacagacccgggtttgatcccgggctgtatcacaaccggttgttattgggagtctcatagggcggtgcacaattgtcccagcgttgtccgggtaaggggagggtttggccggggggctttacttggctcatcacgctctagcgactccttgtggctggCCGGGTGTTTGCAGGCTGACCTCTGTTGTCAGTTGTGTTTCCTCCGGTGTTTCACAAggttgtttcctctgacacattggtgcagctggcttccgggttaagtgggtggGTTTTAAGAAGCGAggttggtgggtcatgtttcggaggatgactcgacctttgcctcccgagccccttggggagttgcagtgatgagggAGAAAAAAGAGGGTACaaacacaaaaaacaaacaaaaagttaCAAAATATCTGATACAAAAAGATTTAGACAAGAAAATACATTTGAcattacattttggtcatttagcatgtggtttcccaaactcggtccttggGCCCCCCTGCGTGCAGATGTAGTTTTTTCCCCCCTAGCACGACACAGTTTTCTCAAATAGtcgaagcttgatgatgagttggttatttgaatcagctgtgtactgagtttgggaaactgtgtcttagcagacactcttatccaattTTGTGTGAAAATAGGGTGAAGACTACTGAAGCACTATGGACAGGCTTAGATTTCAGTTGGACTTTTATGCCAAGCATCTCATCTGGGTATGTCTTTCTTTTTGACATACATTTGCACACTTTTGTGCATCTTCCATAAATGCTCTTGAGGAGAGGCAACctagttgggccagtaaccgaaaggttgctggattgaatccccgaccTGATATGGTAAAAATCTGacgttctgccccagaacaaggcagttaacccactgtgccccggtaggccgtcattgtaaataagaatttgttcttattaactgacttgtctagttaaataaataaaacgttTGAAATG
>TU150730
ACAGTTAGAACTGTGCAGCTAACGTTAGCCGATAAAACTGTCTTAATCTAGATCGCTTTAATGACTCAATGTGTCTGCTCAATTCAAACTAACAGTGTTAGATTATTTGTGCATTCTGCGCTGACATGTTTGAGTAGTGGATTATGACTAGTCTAGGTCTCTCTTTAACACTTTTCTAAGTCACCTGATATCTCAGCTGTCACACTTGCCTCAAGCATTTGTGACATTTTATCATTCGCTTCCTTTGTATGGCGCCTCCCTTCATCCGATCTCTCTTTCAGGTGTGGTCACCGCCAGCAACTAGCCCCAGAATATGAAACTGCAGCAACAAAACGAAAAGGGACAGTATCTTTAGCTAAAATAGACTGCACAGTGAACTCTGAGACGTGTGGACGTTTTGGCGTCAATGGGTACCCCACCACACTCAAAATCTTGCGCAATGGAGAGGACTTTGCTGCTTATGATGGACCCAGGAGTGCAGCTTCGTGAAAAAACAGGCAGGTCCCAGTTCCATTCCTCTGCACAATGAGAGAGACCTGGATGCATTCAACAATTTTGAAGCCAGTGTGGTTGTTTTTTTCTCAGGTGCTGACAGCTCTCAGATGGCTGAGTTTTTGAAGGCGTCTAGTGCAATGAGAGACAGCCACCGCTTTGCCCACACTGCAAACCTGAGCCTGGGCCTCAAACACGGCGTGGAATCAGAAACGGTGGTGCTCTTCCGGCCCCCACGACTCAACAGCAAGTTTGAGGACAGCGTGATGATGGCATGGGGCAAATTCACTTAGTCCCTATAAACCTGATGGCCAgctgGGTGATGAAAGTGACCACTCAGTTCCAGTCTCAGGGGCTGAGTTACGCTGTGGCCAACAGAGCAGAGTTCCAGGATGAGCTGGAGGAGGAGTTTGGCCCAGGGGAGAGCTACCTCTCATCACCATCAGGAACAGGGAGGGCCACAAGTACAGCATGCAGGAGGAGTTCACTTTCCCCGCTATTTTCTTCGTCTCAGCAGGACAGAAGGACCAACCTCGGAAATACAAGGGTGGCCGTGAGGTGAATAATTTCCTCAAATATCTGAAGGAGGAGGCCACACATCCCCTTGTCCTGGGCACTGCCAGAGAAGACTTGTGAGAGCGcaatgaagagagagaagaaaaaacaaGGGATGAGTTGGTGGACTGGCAAAGAAGCAGAAGACATGAACTATAAGGGGGAAAAAGGAGCCATCCATTGCAATACACAGTTTCCCGAACAGAAGATCTCCTTTGGGTTTCTGTGCCTTACCAGCAACACTGAATACTCATAACATAGAGGACttctaaataaaaaaatctgcagtttttTCATGGGGCTTCAAAAGAGTAATGTTCTCAATGTGAGAGGATGGAGCATCTGCAAGTACAGTAATAGGCAACATGTGCAGATTGGTTTTGCAGTTAAACTGGTGACTTGGTGGTTGCTATTAATATTCCCAAGAAAGGCATACTAGTGTAGCGTCCTTGACTCTGAGTAAGGTACCTCAGTCAGACTATAGATAAATGTAGAAAATGAAAAATTATGTGCAACAGTTTTTGCAAAGTTGCTTACGGGTACAAATAAAAAAGTGCCTGCTAAGCAAATAGATAAAAATAGAATAAAATGTCTGATacaggggcctcccgagtggtgcagcggtctaaggcactgaggcgtcactacagacccgggtttgatcccgggctgtatcacaaccggttgttattgggagtctcatagggcggtgcacaattgtcccagcgttgtccgggtaaggggagggtttggccggggggctttacttggctcatcacgctctagcgactccttgtggctggCCGGGTGTTTGCAGGCTGACCTCTGTTGTCAGTTGTGTTTCCTCCGGTGTTTCACAAggttgtttcctctgacacattggtgcagctggcttccgggttaagtgggtggGTTTTAAGAAGCGAggttggtgggtcatgtttcggaggatgactcgacctttgcctcccgagccccttggggagttgcagtgatgagggAGAAAAAAGAGGGTACaaacacaaaaaacaaacaaaaagttaCAAAATATCTGATACAAAAAGATTTAGACAAGAAAATACATTTGAcattacattttggtcatttagcatgtggtttcccaaactcggtccttggGCCCCCCTGCGTGCAGATGTAGTTTTTTCCCCCCTAGCACGACACAGTTTTCTCAAATAGtcgaagcttgatgatgagttggttatttgaatcagctgtgtactgagtttgggaaactgtgtcttagcagacactcttatccaattTTGTGTGAAAATAGGGTGAAGACTACTGAAGCACTATGGACAGGCTTAGATTTCAGTTGGACTTTTATGCCAAGCATCTCATCTGGGTATGTCTTTCTTTTTGACATACATTTGCACACTTTTGTGCATCTTCCATAAATGCTCTTGAGGAGAGGCAACctagttgggccagtaaccgaaaggttgctggattgaatccccgaccTGATATGGTAAAAATCTGacgttctgccccagaacaaggcagttaacccactgtgccccggtaggccgt

Function

NR:

description
protein disulfide-isomerase A3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110534650 False 2902 mRNA 0.47 7 30205700 30209797
TU150730 True 2604 lncRNA 0.34 8 30206058 30209730

Neighbor

gene id symbol gene type direction distance location
gon4l LOC106605460 coding upstream 146 30179985 ~ 30205554 (+)
LOC110486473 LOC106605459 coding upstream 37089 30115535 ~ 30168611 (+)
LOC110486462 NA coding upstream 102007 30097171 ~ 30103693 (+)
LOC110486448 cr3l4 coding upstream 122308 30078648 ~ 30083392 (+)
gnrh-r LOC106605452 coding upstream 275346 29925736 ~ 29930354 (+)
LOC110486492 LOC100194668 coding downstream 686 30210483 ~ 30214827 (+)
LOC118944173 NA coding downstream 4481 30214278 ~ 30214413 (+)
LOC110486525 LOC106605463 coding downstream 24723 30234520 ~ 30249314 (+)
LOC110486531 LOC106605464 coding downstream 51676 30261473 ~ 30311269 (+)
LOC110486559 LOC106605466 coding downstream 104788 30314585 ~ 30321121 (+)
G130879 NA non-coding upstream 48860 30155296 ~ 30156840 (+)
G130773 NA non-coding upstream 211560 29993917 ~ 29994140 (+)
LOC110486403 LOC106580236 non-coding upstream 293767 29900857 ~ 29914741 (+)
G130479 LOC106605450 non-coding upstream 305521 29892273 ~ 29900179 (+)
G130468 NA non-coding upstream 314182 29880312 ~ 29891518 (+)
G130906 NA non-coding downstream 19618 30229415 ~ 30229738 (+)
G130907 NA non-coding downstream 20641 30230438 ~ 30230681 (+)
G130921 NA non-coding downstream 44686 30254483 ~ 30254722 (+)
G130793 NA non-coding downstream 103450 30313247 ~ 30313950 (+)
G130950 NA non-coding downstream 116135 30325932 ~ 30326157 (+)
G130414 NA other upstream 415869 29789576 ~ 29789831 (+)
LOC110486279 LOC106605442 other upstream 511849 29685855 ~ 29697686 (+)
G130308 NA other upstream 564604 29600026 ~ 29641096 (+)
G129155 NA other upstream 720570 29484633 ~ 29485130 (+)
LOC110534631 LOC106580029 other upstream 727570 29424822 ~ 29478401 (+)
G131491 NA other downstream 490385 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 538258 30748055 ~ 30749954 (+)
LOC110534710 LOC106605356 other downstream 1081673 31262054 ~ 31294577 (+)
eaf1 LOC106581241 other downstream 1150639 31360408 ~ 31366322 (+)
G132342 LOC100136303 other downstream 1647851 31834170 ~ 31887572 (+)
G130451 NA non-coding upstream 273239 29855976 ~ 29932819 (+)

Expression


Co-expression Network