LOC110486492 (LOC100194668)


Basic Information

Item Value
gene id LOC110486492
gene name LOC100194668
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30210483 ~ 30214827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558124.2
GGGTTGTACGGCTGTTCATCAAAATTCCCTCGTCCTTAATTGGTCATTTATTTCCCAACCCGCCCAGCCACAAACAAATTAGCCTTTCCTGTGCTGCGTTTGAGAACTTGGTAGCCGGTTGATCTACGCACGCTGCCAAAATGATGGGAAGACCAATCGTCGTGTTGAGCCAGAATATGAAAAGAGAGTCTGGACGCAAGGTTCAGAAAGGGAACATCAGTGCAGCAAAGGCAATAGcagatgtcatcagaacatgcCTGGGACCAAGAGCCATGATGAAGATGCTGCTAGACCCCATGGGCGGCATTGTCATGACCAACGATGGCAATGCCATCCTCCGAGAGATTCAAGTGCAGCACCCGGCAGCCAAGTCCATGATTGAGATCAGCCGCACCCAGGATGAGGAGGTGGGAGACGGCACCACGTCAGTCATCATCCTTGCTGGGGAGATGCTGTCTGTAGCAGAGCAGTTCCTGGAGCAGCAGATGCACCCCACAGTCATCATCAGTGCCTACAGACACGCCCTTGACGACATGCTTGAGATGCTCAAAGACATCAGCACCCCGGTGGATGTGAATGACAGGGCGCAGATGCTGAAGATCATCAACTCTGCCATCTGCACCAAGGCCTTGAGCCGTTGGTCTACCATGGCGTGTAATATTGCCCTGGATGCCGTGCGCACTGTGGAGTTGGAGGAGCACGGGCGCAAGGAGATCAACATTAAGCTGTACGCCAAAGTGGAGAAGGTGCCTGGTGGCTTCATTGAGGACTCATGTGTGCTAAAAGGCGTGATGGTCAACAAGGACGTCACTCACCCCCGCATGCGCAGAATGATCAAGAACCCCCGCATCATCCTGCTGGACTGCTCCCTGGAGTACAAGAAGGGCGAGAGCCAGACTGACATTGAGATCACACGTGaggaggatttttctagaatccTTCAGATGGAGGAAGAGTACATCCAGACAATCTGTGAAGACATCATCCGCCTCAAGCCAGACCTCATCTTCACCGAGAAGGGCATCTCAGACCTGGCACAACACTATCTGATGAAGGCCAACATCACAGCCATCCGCCGTGTCAGAAAGACTGACAACAACCGCATTTCAAGGGCATGTGGGGCTCGCATCGCCAGCCGTACAGATGAGCTGCGTGAGGAGGACGTGGGAACCGGCGCCGGCCTGTTTGAGATCAAGAAGATTGGAGATGAGTACTTCACCTTTGTCACAGAGTGCAAAGACCCCAAAGCCTGCACCATCCTGCTGAGAGGAGCCAGCAAAGAGATCCTGGCTgaGGTGGAGCGTAACTTGCAGGATGCAATGCAGGTGTGTCGTAACGTGCTACTGGACCCATCTCTACTCCCTGGAGGTGGGGCGGTGGAAATGGCTGTGTCCAAGAGGCTGATGGAGCGTTCCAAGACCCTGACTGGGGTGGAGCAGTGGCCCTACCGTGCCGTGGCCCAGGCCCTGGAGGTTATCCCCCGTACACTCATCCAAAACTGTGGTGCCTCAACCATCCGTGTGCTCACCTCTCTCAGGGCCAAGCACACCCTGGAGGCCTGTGCATCATGGGGTGTGAACGGAGAGACTGGCACCTTGGCAGACATGATGGAGCTTGGCATCTGTGAGCCGCTGGCTGTCAAGGCCCAGACTTACAAGACTGCTGTGGAGACGGCCATCTTGCTGCTCCGCATTGATGACATTGTGTCTGGAATCAAGAAGAAAGGCGATGACCAGgctggaggaggacagggagcagAATGAAGATAAATGAGGAAAGAAATGGGTTGGTAGACCAGTGGGCCAACAGACCGCTAGTGTACATAGTACAGCCTACTGTTCTCTTTTGGGATGCTATTTTGCAAAAATACTAAATGTTTGGCCTGGATTGTCTGTTCTCAACCAAGTATGTGTGTCGATAATCAAGCATCACAGTAGCCATGTATGTTTGATTTGCTATAAAATTCAAATCGAATGCG

Function

NR:

description
T-complex protein 1 subunit gamma-like

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09495 CCT3, TRIC5; T-complex protein 1 subunit gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558124.2 True 1978 mRNA 0.53 14 30210483 30214827

Neighbor

gene id symbol gene type direction distance location
LOC110534650 LOC106580339 coding upstream 686 30205700 ~ 30209797 (+)
gon4l LOC106605460 coding upstream 4929 30179985 ~ 30205554 (+)
LOC110486473 LOC106605459 coding upstream 41872 30115535 ~ 30168611 (+)
LOC110486462 NA coding upstream 106790 30097171 ~ 30103693 (+)
LOC110486448 cr3l4 coding upstream 127091 30078648 ~ 30083392 (+)
LOC110486525 LOC106605463 coding downstream 19693 30234520 ~ 30249314 (+)
LOC110486531 LOC106605464 coding downstream 46646 30261473 ~ 30311269 (+)
LOC110486559 LOC106605466 coding downstream 99758 30314585 ~ 30321121 (+)
LOC110486570 LOC106580396 coding downstream 111663 30326490 ~ 30349970 (+)
decr1 decr1 coding downstream 137941 30352768 ~ 30359695 (+)
G130879 NA non-coding upstream 53643 30155296 ~ 30156840 (+)
G130773 NA non-coding upstream 216343 29993917 ~ 29994140 (+)
LOC110486403 LOC106580236 non-coding upstream 298550 29900857 ~ 29914741 (+)
G130479 LOC106605450 non-coding upstream 310304 29892273 ~ 29900179 (+)
G130906 NA non-coding downstream 14588 30229415 ~ 30229738 (+)
G130907 NA non-coding downstream 15611 30230438 ~ 30230681 (+)
G130921 NA non-coding downstream 39656 30254483 ~ 30254722 (+)
G130793 NA non-coding downstream 98420 30313247 ~ 30313950 (+)
G130950 NA non-coding downstream 111105 30325932 ~ 30326157 (+)
G130414 NA other upstream 420652 29789576 ~ 29789831 (+)
LOC110486279 LOC106605442 other upstream 516632 29685855 ~ 29697686 (+)
G130308 NA other upstream 569387 29600026 ~ 29641096 (+)
G129155 NA other upstream 725353 29484633 ~ 29485130 (+)
LOC110534631 LOC106580029 other upstream 732353 29424822 ~ 29478401 (+)
G131491 NA other downstream 485355 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 533228 30748055 ~ 30749954 (+)
LOC110534710 LOC106605356 other downstream 1076643 31262054 ~ 31294577 (+)
eaf1 LOC106581241 other downstream 1145609 31360408 ~ 31366322 (+)
G132342 LOC100136303 other downstream 1642821 31834170 ~ 31887572 (+)

Expression


Co-expression Network