LOC110486559 (LOC106605466)


Basic Information

Item Value
gene id LOC110486559
gene name LOC106605466
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30314585 ~ 30321121 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558269.2
AGTCCATAGCCAGGAATTTCTTCAGCCAAGATAGCCTACCTGTCAATAGAGACACGCCCATggttataaaatgaatgagtgagTGCTTCAAGTCCACCATAGCCATATCCCACCTGTCCCGCTGCAGCCACACCAGGTTGTCTTGGAAATAGACTAAAACATCAAGTAATTTCAGAGACCTCCTGTCAAGCGGATACGAAACGTTACTCTGTCACTCCCATCATGGAAGCTCTGCAGAAGTCTATGCAAAAAAACACTCCCAAAGCCAGTTCTCATGCGATGTGGTGGGGTACACTGGGCACTGTGCGACCCTTCCCCAACTTCAACTCAGAGAAGGATGCCCGCGACATTCAAACTGCCCTGGAGAGCAAAGACAGTGATGTGAACACTTTGGTGAGAATCCTGACCAATCGAAACAATGTTCAGAGACAGAGCATCGCAGAGTCCTACCGTAACCTCACACAGAAGGATGTATGTCCTGCCCTGAAGAAAGCTCTGTCAGGGGGGCTGGAGCAACTCATGCTGGGGCTGATGATGACCCCCTCTCAGTTTGACGCCCATCGCCTCAGACAGTCCATGGAGGGTATTGGTACAGACGAAGAGAGTCTATTGGCTGTGTTGTGTACCAAATCACCACAGCAGCTTAAAGATGCCACTATTGCCTACAAACAGGAGTTTGGACGTTACTTGGAGAATGATCTTATCAGTGAGACTAGTAAAGACTTCACTAAGCTGGTACTGGCCATACTCAAGAAGGAGGAGCTGAATTCAAAGGAGATGGTTGATTATCAGCTCATTTACCAGGATGTTAAGgctctGAATGATGCTGTGAATGGTAAGAAAAAGGACCCAGCCCCCTGGATTCAGGTGTTAACCACGAgagactcaaaccatctcaaCAGAGtgCTATCCAGGTTGGAGGATCTGAGAGGGGAGACTGTGGATAAAACAGTACAGAGTCACTTCTCTGGGGACCTGAGGCTTGGCTTCCGCACTCTGGTTGGCTCCATCCCAAGTATTCCTTTGTTTCTGGCCCAGCGTCTACACAGCAACATTAAGAAAGGCAGTTTAGTGCAGGGGATTCTTATCAGCCACAGTGAAGAGGACCTCCTCTGTGTGAGAATCGAGTATCGCAGACTGACCAACACTTCACTCTACTCTACATTGCAGAAAGAATACAAAGGAGAGATGCAGCAGGCTCTCCTAGCCTTGTGTCGATCTGAAGACCTGTAGAGGAAGAATACCTTTTAACCTACACACGTTGTTGTAACCTAAGAACTGGTATTATGTCTCTCCATTAAACAATTTACACGTCTTTGATATTTCAGCATATTTTGCCATAATTCTACCATGTCTATTTCACCCATAGTGCTAACCATTATGATCGGGTAATTGGCCTTATAGCAACCGAATTTCAAACATCTCACACCTTTGTTTCTACTTCTATGAATATcatccagtgtgtgtgagagttggtGGGGAACAGGGTCCAGGCGCTTCAAATTCtaagtgtctctctccctctgttcgtCCTAATCCCAGGTCAATGTTAGCCAGGAAGTATTAATATCCCTCAAGCATCTCATAGCTAGCATCTCAgactcccctcttcccctccccaccaTTACCCACTGATTCAATCGGTGTTAATCAAATGTGATGTTGGCAGCCTTGGATGTTTGTGTGAGTCGAGACAAAGAGTTTGGATCCTATGATGAGACGCATCAAAAACCACATGTAACTGTTCCTTAATAATGCAACTTTGAACTTGTACAAAGTTCAAAACGATAAATAATAAAAGTTAGTTTTAAACATAAAA
>XM_021558261.2
taaaatgaatgagtgagTGCTTCAAGTCCACCATAGCCATATCCCACCTGTCCCGCTGCAGCCACACCAGGTTGTCTTGGAAATAGACTAAAACATCAAGTAATTTCAGAGACCTCCTGTCAAGCGGATACGAAACGGTACTATCAGTTACTCTGTCACTCCCATCATGGAAGCTCTGCAGAAGTCTATGCAAAAAAACACTCCCAAAGCCAGTTCTCATGCGATGTGGTGGGGTACACTGGGCACTGTGCGACCCTTCCCCAACTTCAACTCAGAGAAGGATGCCCGCGACATTCAAACTGCCCTGGAGAGCAAAGACAGTGATGTGAACACTTTGGTGAGAATCCTGACCAATCGAAACAATGTTCAGAGACAGAGCATCGCAGAGTCCTACCGTAACCTCACACAGAAGGATGTATGTCCTGCCCTGAAGAAAGCTCTGTCAGGGGGGCTGGAGCAACTCATGCTGGGGCTGATGATGACCCCCTCTCAGTTTGACGCCCATCGCCTCAGACAGTCCATGGAGGGTATTGGTACAGACGAAGAGAGTCTATTGGCTGTGTTGTGTACCAAATCACCACAGCAGCTTAAAGATGCCACTATTGCCTACAAACAGGAGTTTGGACGTTACTTGGAGAATGATCTTATCAGTGAGACTAGTAAAGACTTCACTAAGCTGGTACTGGCCATACTCAAGAAGGAGGAGCTGAATTCAAAGGAGATGGTTGATTATCAGCTCATTTACCAGGATGTTAAGgctctGAATGATGCTGTGAATGGTAAGAAAAAGGACCCAGCCCCCTGGATTCAGGTGTTAACCACGAgagactcaaaccatctcaaCAGAGtgCTATCCAGGTTGGAGGATCTGAGAGGGGAGACTGTGGATAAAACAGTACAGAGTCACTTCTCTGGGGACCTGAGGCTTGGCTTCCGCACTCTGGTTGGCTCCATCCCAAGTATTCCTTTGTTTCTGGCCCAGCGTCTACACAGCAACATTAAGAAAGGCAGTTTAGTGCAGGGGATTCTTATCAGCCACAGTGAAGAGGACCTCCTCTGTGTGAGAATCGAGTATCGCAGACTGACCAACACTTCACTCTACTCTACATTGCAGAAAGAATACAAAGGAGAGATGCAGCAGGCTCTCCTAGCCTTGTGTCGATCTGAAGACCTGTAGAGGAAGAATACCTTTTAACCTACACACGTTGTTGTAACCTAAGAACTGGTATTATGTCTCTCCATTAAACAATTTACACGTCTTTGATATTTCAGCATATTTTGCCATAATTCTACCATGTCTATTTCACCCATAGTGCTAACCATTATGATCGGGTAATTGGCCTTATAGCAACCGAATTTCAAACATCTCACACCTTTGTTTCTACTTCTATGAATATcatccagtgtgtgtgagagttggtGGGGAACAGGGTCCAGGCGCTTCAAATTCtaagtgtctctctccctctgttcgtCCTAATCCCAGGTCAATGTTAGCCAGGAAGTATTAATATCCCTCAAGCATCTCATAGCTAGCATCTCAgactcccctcttcccctccccaccaTTACCCACTGATTCAATCGGTGTTAATCAAATGTGATGTTGGCAGCCTTGGATGTTTGTGTGAGTCGAGACAAAGAGTTTGGATCCTATGATGAGACGCATCAAAAACCACATGTAACTGTTCCTTAATAATGCAACTTTGAACTTGTACAAAGTTCAAAACGATAAATAATAAAAGTTAGTTTTAAACATAAAA

Function

NR:

description
annexin A2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558269.2 False 1819 mRNA 0.45 13 30314585 30321121
XM_021558261.2 True 1763 mRNA 0.45 13 30314651 30321121

Neighbor

gene id symbol gene type direction distance location
LOC110486531 LOC106605464 coding upstream 3316 30261473 ~ 30311269 (+)
LOC110486525 LOC106605463 coding upstream 65271 30234520 ~ 30249314 (+)
LOC110486492 LOC100194668 coding upstream 99758 30210483 ~ 30214827 (+)
LOC118944173 NA coding upstream 100172 30214278 ~ 30214413 (+)
LOC110534650 LOC106580339 coding upstream 104788 30205700 ~ 30209797 (+)
LOC110486570 LOC106580396 coding downstream 5369 30326490 ~ 30349970 (+)
decr1 decr1 coding downstream 31647 30352768 ~ 30359695 (+)
LOC110534660 LOC106605472 coding downstream 164251 30485372 ~ 30505119 (+)
LOC110486625 LOC106605474 coding downstream 197322 30518443 ~ 30530346 (+)
LOC110486681 LOC106580557 coding downstream 211707 30532828 ~ 30542573 (+)
G130793 NA non-coding upstream 635 30313247 ~ 30313950 (+)
G130921 NA non-coding upstream 59863 30254483 ~ 30254722 (+)
G130907 NA non-coding upstream 83904 30230438 ~ 30230681 (+)
G130906 NA non-coding upstream 84847 30229415 ~ 30229738 (+)
G130950 NA non-coding downstream 4811 30325932 ~ 30326157 (+)
G130947 NA non-coding downstream 43259 30364380 ~ 30364733 (+)
G130799 NA non-coding downstream 73068 30394189 ~ 30397680 (+)
G130988 NA non-coding downstream 108107 30429228 ~ 30429516 (+)
G130993 NA non-coding downstream 118811 30439932 ~ 30440195 (+)
G130414 NA other upstream 524754 29789576 ~ 29789831 (+)
LOC110486279 LOC106605442 other upstream 620734 29685855 ~ 29697686 (+)
G130308 NA other upstream 673489 29600026 ~ 29641096 (+)
G129155 NA other upstream 829455 29484633 ~ 29485130 (+)
LOC110534631 LOC106580029 other upstream 836455 29424822 ~ 29478401 (+)
G131491 NA other downstream 379061 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 426934 30748055 ~ 30749954 (+)
LOC110534710 LOC106605356 other downstream 970349 31262054 ~ 31294577 (+)
eaf1 LOC106581241 other downstream 1039315 31360408 ~ 31366322 (+)
G132342 LOC100136303 other downstream 1536527 31834170 ~ 31887572 (+)

Expression


Co-expression Network