calb1 (LOC106580458)


Basic Information

Item Value
gene id calb1
gene name LOC106580458
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30364891 ~ 30382941 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558325.2
CggcgggaggagaggaggtgactTGCGCGTTTGGCTAGTTTCCCAACGTCGGGGAAGGGGGGGCGACAGTGAAAGATTAGCGTGATAGTGCTCCCTTTAAATACGGGGCACCGACTAATCAAAGCGTCTCATTCATAGCATATCCTCCGCCAGTGCAGCTATCTGGTACGCGCTCCGGTCCCCAAACCTAACCCGCGACATGGCAAACGCTTACCTGCAAGGAGTAGAGATCTCTGCATCACAGTTCCTGGATATTTTTCACCATTATGATAACGATGGTAATGGATATATTGAAGGGAAGGAGTTGCAGAGTTTTATAAAAGAACTTCAGCAAGCTCGAAAACAGGCAGGACTTGAGCTTACAGACCAAATGAAGGCTTTTGTACAGGAATATGAGAAAAATACAGATGCCAAAATTGGAATTGTTGAGCTAGTCCAAATATTGCCCACAGAGGAGAACTTCTTGTTATTTTTCCGGCAACAGTTGAAGTCTTGTGCGGACTTTATGCAGGCTTGGCGGTGTTATGATGCAGACCATAGTGGCTACATTGAAGCAGATGAGCTGAAGAACTTTTTGAAAGATCTGCTTCAGAAGGCTAAGAAACCATATGACGAAAAGAAGTTAGATGAGTATACACATACCACACTCAAAATATTTGACTCAAACCACGATGGGAAGTTGTGTTTGGCAGAAATGGCAAGgCTGCTACCGGACGAGGAGAACTTTCTACTCAAGTTTCAGAATGTGAAGATGGTGAGAAGAGAGTTCAACAAGATCTTTGAGTTATACGATCAGgatGAGAACGGCTATATGGATGAGAATGAGCTGGATGCCCTCCTCAAAGATTTGTGTGAGAAGAACAAGAAGGTGCTGGAAGTCAACAAAATCCCCACATATAAGACCGCCATTATGGCGCTATCAGACGGGGGCAAGCTGTACAGGACAGAGCTAGCACTGGTGCTCTGTGCTGAGGACATTTCAGCCCCTGCCCCCTTATAAACCACTCCTCTTTCCACCTAACCACACCCCCTCCATCCCCTTCCAACCCGCCTCCCTTCCCCTCACTCATGAAGTGTTTAAAGATACTGTAGCTTGAAACTCCAAGAACGTAGGGTGTATTTTTGTTTCagtttttgcttttctttcaagaaatctgtcaatttgccagtgacagtgtgtgtgtagctaGGGCACATTATCAGAGACATAGGGTGTCACATACTTTTCAAATCTTTTGTTTCTATACTCTTTGTAAATGTACAGATTTTTGTAACAATGAGATTGATACCACCATTGAAAGTCCCTGTACTTTGTCTTCTCTATACTACATACTCCAACCTCTCATTGGCTGAAAGAGAGGGTGTGTCCCCTACTGACCAGTGACAACAATGTTTACTGTACTGTTAATTAATATCTCTACACCAAGTAGTCAAACTACTAGTAACAATAACTTATTATAATTATATCCCTCCAGTAGCCTAAGCAATACGTTACTAAAATGTTTCTGTAATGTGGTGCATGGAAATTAAAGATAAAGAAAATAGCGGAAGAACAGTTCCGTGATGTGAGACAATTTTAAGCTATATATCGTTTTGCAGTGCATGTTAGTTGCTGAAGGCTAGCCTTGTATGGAGATACTACTGAATGGACAAGCACATATCTCAGAGTTGTGTAGCCTAACCCCCATGACCCCTGACCTGCCCTGTGTACAACGATGGTGCCAGTCTCTGATGTGCTACATGGACCTTTTTTTGCACTGTAAACAATGCCATGCCCCACCATGCTGGGCACCAGAAACACTGTGTAAGATGTAATAAAAACTCAATTTAACAACTACCTTA

Function

NR:

description
PREDICTED: calbindin-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K14757 CALB1, CALB; calbindin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558325.2 True 1842 mRNA 0.43 11 30364891 30382941

Neighbor

gene id symbol gene type direction distance location
LOC110486577 pmvk coding downstream 12562 30348834 ~ 30352329 (-)
tmem79b LOC106605462 coding downstream 115246 30224586 ~ 30249645 (-)
slc39a1 zip1 coding downstream 296232 30062714 ~ 30068659 (-)
LOC110486432 LOC106580288 coding downstream 302491 30044707 ~ 30062400 (-)
LOC110486409 LOC106605454 coding downstream 323397 29995917 ~ 30041494 (-)
pnp4b LOC106605471 coding upstream 11911 30394852 ~ 30413773 (-)
LOC110486614 LOC106580462 coding upstream 98063 30481004 ~ 30484360 (-)
aldh5a1 LOC106605473 coding upstream 120684 30503625 ~ 30509152 (-)
LOC110486664 LOC106605475 coding upstream 126917 30509858 ~ 30518027 (-)
gbp LOC106605477 coding upstream 174619 30557560 ~ 30558960 (-)
G131212 NA non-coding downstream 2833 30361150 ~ 30362058 (-)
G131207 NA non-coding downstream 42828 30321818 ~ 30322063 (-)
G131202 NA non-coding downstream 50736 30313001 ~ 30314155 (-)
G131150 NA non-coding downstream 98605 30265829 ~ 30266286 (-)
G131117 NA non-coding downstream 101425 30262569 ~ 30263466 (-)
G131161 NA non-coding upstream 9686 30392627 ~ 30393415 (-)
G131235 NA non-coding upstream 42835 30425776 ~ 30426224 (-)
G131236 NA non-coding upstream 44816 30427757 ~ 30428027 (-)
G131239 NA non-coding upstream 50337 30433278 ~ 30433506 (-)
G131241 NA non-coding upstream 51671 30434612 ~ 30434842 (-)
LOC110486376 LOC106605451 other downstream 486323 29859575 ~ 29878744 (-)
LOC110534614 LOC106605399 other downstream 1887060 28475823 ~ 28533709 (-)
G129582 NA other downstream 2054159 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 2214905 27933389 ~ 28149986 (-)
G129250 NA other downstream 2598359 27766157 ~ 27766532 (-)
c2h8orf37 cssa05h8orf37 other upstream 506752 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 514085 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 809478 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 814132 31196917 ~ 31199241 (-)
G132197 NA other upstream 1153106 31536047 ~ 31543009 (-)

Expression


Co-expression Network