pnp4b (LOC106605471)


Basic Information

Item Value
gene id pnp4b
gene name LOC106605471
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30394852 ~ 30413773 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558337.2
CTAGGTTGCGTGGCACTATCTCACTCCCTCATGATCTCTCTTAACTCTATCTATCGTCGCCAGCTTTGATTAACTCTAAACTCTCCACCAGACTGCACCTGACAGACCTGTTTGTGGATCATGCATACCAAAGGAAGTACAGAATGCTGTTGCTCTTTTGAAGACTACAATCAGACGACAGAATGGCTTCTGAGCCGGACGAGACACAGGCCTAAGATCGCAGTGGTGTGTGGCTCAGGCCTGGGCCTGCTCGCCGATGGTGTTACCAACAAAGAGATCTTCCCTTACGCAGATATCCCCAACTTCCCCGTCAGCACAGTCCCGGGTCATGAGGGGTGTCTGGTGTTCGGTATTCTGAAAGGCAAATCCTGCGTCTTCATGCAAGGCAGATTCCATCTCTACGAGGGCTATTCACTCTGTAAGGTCACATTCCCGGTGCGGATCTTCAAGCTTTTGGGCGTGGAGACCCTCATTGTGACTAACGCCTCAGGGGGCCTGTGTCCGGACTTCAAAGTGGGCGACATCATGCTCATTAAGGACCACATTAACCTGCCAGGCTTCGCCGGCCAGCACCCTCTGTGCGGCCCCAATGACGAACGGTTTGGGATCCGGTTCCCCTGCATGTCAGATGCCTACAGTAAGGACCTGAGGAAGCTAGCTCTAGATATCAGTCATGAGCTGGACTATACCAACTTTGTGCGGGAAGGGGTGTACTGCATGGTGAGCGGGCCCAACTTCGAGACCATCGCTGAGGCACGCATGTTGCAGGTCTTGGGGTGCGACTCTGTGGGCATGAGTACGGTCCCAGAGGTAACAGTGGCCAAGCACTGTGGCCTGAGGGTCTTTGGTCTCTCACTCATCACCAACAAGGTCTCCCTGGACTACAGCCGTGAGGAGAAGGTGAACCATGAGGAGGTCCTGGAGATCAGCAAGATGAGGGCGGAGCATGTGCAGATGATGCTCAACACACTTATTGCCCGCTCAGACCAGCTGGACGAGGGCATCAATGTCAACTGAAGGAGGAagggggatggagaaagagacagagacatactctAATGTTGaagcacactctctcacacacagacactcacaaacACGCAGAAATGTACACAGACATGTGCAAACATGTACATATCATTCCCTGTGAATCTTTACAATAATCAACCACCCATGATGAAAGAATTTAGTCCATTTTCCAGTTTAATAAAATGTTctaaagttgtttttttttttacacaagaaCCAGTCTGTTAAAACATTAAATGCTTATTTGATGATAGGGCACTGACATGAGAATACGTAATGCTCCTATTTAACATCAGCTGAAGGGGTGCCACTACCAGTTGAACAACTGAAcaccttcaactgaaatgtgtcttctgcctTTAACCCAacctaggtatccccctttccttacGTGAGgaaattcagagagagagagagagagattgtcacGCCCTGTGActttctttgttggcctagtatggtttgttgtctctgattggggatcatacttaggcagccctttttcccaccttcagttgtgggatcttgtttttgtgcagttactgtgtagcctgcagaacgTTACGTTCGTTTATCTTTTGTTGTTTTTATCTAAATAAAGAaagatgtacgcttaccatgctgcgccttggtccgatccttcaaaCAACGGACATAACAGAAGATCGTTGtttgaaggatcggaccaaggcgcagcatggtaagcgtacatcttTATTTAGATGAACACCAAAAAAACTAAAGATAAACGAGGTGGGAAacaaggctgcctaagtatgatccccaatcagagacaacaatagacagctgcctctgattgggaaccatacccggccaacaaagaaatagaaaaactagaatgcccacccaaatcacaccccgacctaaccaaaaagagaaataaaaaggctctctaaggtcagggcgtgacagagattATACATTAATTCCACCAAATGTTtctctccc

Function

NR:

description
purine nucleoside phosphorylase-like

GO:

id name namespace
GO:0009116 nucleoside metabolic process biological_process
GO:0004731 purine-nucleoside phosphorylase activity molecular_function

KEGG:

id description
K03783 punA, PNP; purine-nucleoside phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558337.2 True 1998 mRNA 0.48 7 30394852 30413773

Neighbor

gene id symbol gene type direction distance location
calb1 LOC106580458 coding downstream 11911 30364891 ~ 30382941 (-)
LOC110486577 pmvk coding downstream 42523 30348834 ~ 30352329 (-)
tmem79b LOC106605462 coding downstream 145207 30224586 ~ 30249645 (-)
slc39a1 zip1 coding downstream 326193 30062714 ~ 30068659 (-)
LOC110486432 LOC106580288 coding downstream 332452 30044707 ~ 30062400 (-)
LOC110486614 LOC106580462 coding upstream 67231 30481004 ~ 30484360 (-)
aldh5a1 LOC106605473 coding upstream 89852 30503625 ~ 30509152 (-)
LOC110486664 LOC106605475 coding upstream 96085 30509858 ~ 30518027 (-)
gbp LOC106605477 coding upstream 143787 30557560 ~ 30558960 (-)
LOC110486705 ccne2 coding upstream 334282 30748055 ~ 30758543 (-)
G131161 NA non-coding downstream 1437 30392627 ~ 30393415 (-)
G131212 NA non-coding downstream 32794 30361150 ~ 30362058 (-)
G131207 NA non-coding downstream 72789 30321818 ~ 30322063 (-)
G131202 NA non-coding downstream 80697 30313001 ~ 30314155 (-)
G131150 NA non-coding downstream 128566 30265829 ~ 30266286 (-)
G131235 NA non-coding upstream 12003 30425776 ~ 30426224 (-)
G131236 NA non-coding upstream 13984 30427757 ~ 30428027 (-)
G131239 NA non-coding upstream 19505 30433278 ~ 30433506 (-)
G131241 NA non-coding upstream 20839 30434612 ~ 30434842 (-)
G131246 NA non-coding upstream 25280 30439053 ~ 30440223 (-)
LOC110486376 LOC106605451 other downstream 516284 29859575 ~ 29878744 (-)
LOC110534614 LOC106605399 other downstream 1917021 28475823 ~ 28533709 (-)
G129582 NA other downstream 2084120 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 2244866 27933389 ~ 28149986 (-)
G129250 NA other downstream 2628320 27766157 ~ 27766532 (-)
c2h8orf37 cssa05h8orf37 other upstream 475920 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 483253 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 778646 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 783300 31196917 ~ 31199241 (-)
G132197 NA other upstream 1122274 31536047 ~ 31543009 (-)

Expression


Co-expression Network