LOC110486614 (LOC106580462)


Basic Information

Item Value
gene id LOC110486614
gene name LOC106580462
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30481004 ~ 30484360 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945348.1
TTTACGGAGAATCGAAACCAACATTTTCCAGTCTGAACTTCTACTGCAATCCATGGTCTGTCATGAAAAtagttatatttattttatagtctGAATTTGAAAATCTGCATTACTATATAGCATGTAGTGTTAAGTAAGCAGCCTAACTTACATGTCACCTTATTTGGAAAGGAcctgtaggcctactctgtcagTTGGGAGTAAGTGGAGCTGAATGCAGTTTTGGTTGTGTAAAAGTGAAAACGTGAACAGAGATGGGGGACAAGAAACAAGACTCAGTGGAAAGGCCAGCAGATGGCAATAAGAACCAGACGAGTGACTCCCTCCAACAGGTTACAGCCCCTGGAAATTCCAaggggagaaagaagagaggaaagaaaaaGAGGAGTGCCAAGAAGATGGAGgacaaggagggagagatggacaaaTTTGCCCCATTGCAGTCTGTCCTGGTTCAATCACAATCAGAGGAATCTAGCCCAGCCCAATCCCCATCAGTGCAAGCTGACCCACCCTTAGGGCAATCTAATCGAGAGAAACCTACACCAGAGCAACCTATCCCGGAGCAACCCAAACCAGAGACACCCAAACCAGCACAACGTAACCCTGCCCAACCACTTACAGGGCATCAAAACCCAGCCACGCTCCCTTCAGCGCTACCCAATCAAGCCCAACCAGAGCAACCCAATCCAGTGCACCCTAACCTATCCCAACCACCTTTAGACCATCTCTCCCTAACCCAGTCAAAGGACCAGCCAACTGAAGCCCAACCACATCCAGATCAGGGTCCTCCAACCTGGTTATCCACAGATCAGTCATCTCCACAACAGTCTTCGCCAGATCCGTCATCTCCACACCAGTCATCACCAGATCAGTCATCTCCAAACCAGTCATCACCAGATCAGTCATCTCCACAACAGTCATCACCAGATAATCCAGATCTGTCATCTCCACACCAGTCATCACCAGATCCGTCATTTCCAAACCAGTTATCACCAGATCAGTCATCTCCACAACTGTCATCTCCACAACAGTTATTACCTAAACATCCAGATCAGTCATCACAGTCATCTCCAGACGAGGACAAACCTAAGAAAAAGGGAGATCCAAACAAACTTTCCCTTCTGACCTGGAACATAGATGGCCTGGACCTGAACGATATCAAGGAACGTCTCTCAAGGCTACTGGACTACCTGATCAAGTACCACCCCGACATTGTGCTACTGCAAGAGGTTATTTCACCAATTTACCAGGTTTTACAGCAGGTTCTGAAGCCGTATCATGTGTTGCCGGGTAGTGACAGAAGCTATTTCACTGCCATACTGCTGAGGAAGTCCAGAGTTCAACTTCTGGAGAGTAGCATAGTGAATTACCCTACCACAGAGATGAGGAGAAATCTGCTTATGGCCCATGTTTCTTTCCTTGGCCATCCGTTGTGTGTGATGACGTCCCACTTGGAGAGCATGAAGCCCCGATCCCTGGAACGCCAGAACCAGCTGAGGACGGTGTGGAAGACAATGAGGGAGCAGCCCCAGGACCACAGCGTCATCTTTGGGGGAGACACCAACCTCAGGGACTGggaggtgaAGAACCAGGGCGGTCTACCCGAGAACATCTGTGACGTATGGGAGTCCCTGGGCCAGCCGGAAGACTGCCGGTACACCTGGGACTGTGTCACCAATGACAACAAGGACCTCCCTTTCCCCGCACGCCTGCGCTTTGACCGCATCTTCCTGAGGCAGGCCGGCGAGGGGTCAAAGGTCAGCCCAGATGGCATCACCCTGGTGGGCCTGGAGAGGTTGAATGACTGTCAACGCTTTACCAGTGACCACTGGGGTCTCCTCTGCACCTTCGTCATAAAACCACTCAGTCAAGCAACACCTGAATGATACAAAGGGAACAGTTAGCTGTCCATGTCATGTCAACCTGGAACAGCATATAAGTCTTTGCCCATCTTCTTTATGTACATTGGGAGATTTTGAGATTTTGACCTAGGAAAGAACAGGATTATGGGCACAGCAATAGTGATTAATGACTTCAATTTCTATGTTTGGCAACTGCTGCTGTTCCAAGGCACACTTTTAATTTATCCAGCCATATATTTGTCTGTGCCAACAGGTTATGTACCCTATTCAAGGGCACATTCATACTGTCTTTGGACTTGGAAGCAGAAACTATATTGGCTATCCTCCAGGTTACAGTATCTGATTATTTTCTATCACTgttttaaacatcacagcatcaAGCCAATTTCACAATAAACTCATTTTGTTCCAGACAata

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K19619 TDP2; tyrosyl-DNA phosphodiesterase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945348.1 True 2283 mRNA 0.48 6 30481004 30484360

Neighbor

gene id symbol gene type direction distance location
pnp4b LOC106605471 coding downstream 67231 30394852 ~ 30413773 (-)
calb1 LOC106580458 coding downstream 98063 30364891 ~ 30382941 (-)
LOC110486577 pmvk coding downstream 128675 30348834 ~ 30352329 (-)
tmem79b LOC106605462 coding downstream 231359 30224586 ~ 30249645 (-)
slc39a1 zip1 coding downstream 412345 30062714 ~ 30068659 (-)
aldh5a1 LOC106605473 coding upstream 19265 30503625 ~ 30509152 (-)
LOC110486664 LOC106605475 coding upstream 25498 30509858 ~ 30518027 (-)
gbp LOC106605477 coding upstream 73200 30557560 ~ 30558960 (-)
LOC110486705 ccne2 coding upstream 263695 30748055 ~ 30758543 (-)
LOC110486727 tp53inp1 coding upstream 276925 30761285 ~ 30773403 (-)
G131341 NA non-coding downstream 9185 30471501 ~ 30471819 (-)
G131256 NA non-coding downstream 29551 30451091 ~ 30451453 (-)
G131246 NA non-coding downstream 40781 30439053 ~ 30440223 (-)
G131241 NA non-coding downstream 46162 30434612 ~ 30434842 (-)
G131239 NA non-coding downstream 47498 30433278 ~ 30433506 (-)
G131347 NA non-coding upstream 431 30484791 ~ 30485262 (-)
G131348 NA non-coding upstream 992 30485352 ~ 30486009 (-)
G131351 NA non-coding upstream 7469 30491829 ~ 30491932 (-)
G131358 LOC106605474 non-coding upstream 37145 30521505 ~ 30521863 (-)
G131360 NA non-coding upstream 41381 30525741 ~ 30527010 (-)
LOC110486376 LOC106605451 other downstream 602436 29859575 ~ 29878744 (-)
LOC110534614 LOC106605399 other downstream 2003173 28475823 ~ 28533709 (-)
G129582 NA other downstream 2170272 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 2331018 27933389 ~ 28149986 (-)
G129250 NA other downstream 2714472 27766157 ~ 27766532 (-)
c2h8orf37 cssa05h8orf37 other upstream 405333 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 412666 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 708059 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 712713 31196917 ~ 31199241 (-)
G132197 NA other upstream 1051687 31536047 ~ 31543009 (-)

Expression


Co-expression Network