LOC110534660 (LOC106605472)


Basic Information

Item Value
gene id LOC110534660
gene name LOC106605472
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30485372 ~ 30505119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945475.1
gactggtactgtatattgaagaTATCTCGTCCCCATCCCCTTGCATGGAAGGCAAGCCACCGAGGCCAGGCAGTGATGGTGAGCATCATGACATGAGCATCCTTTCCCCGAATATCAGTGCGCACTAATTTTGCTCAGCTGCAGATAAAATTGCTTCTCGAGACACACCACCACCCAGCCGGATGCGCCCAAAAGAGCTACAAAGGATGTGTACTGGTAACAGCAGCAGGGGAACAGCGGAGAAGGATGGTACAGTAGCTGGCGTGAACAAGACAGTGGCACCCGAGCCGAGCTAAGCGTATTTCGACTGCAGTGTCTGAGCGCCGGGAAATTACACCCCCTAATTTGTATTTTCGACTGGAACAACGACGTTCACTTCTAACGCTATTTGGATACATTGTTGCACCCTTCATCCTTGGTTTAGATCAGTCTGTCCGGTGCATCATGCAGACAGGAGCTCACCTGCTTCTCTGTTTCATCCTGCACTATGTGGAAGGATAGTGAACTACAGAACACATCCTTGGCCAGCTCAGGGCCAACATTCACGCCCAAACCACAGAATGACAGTGTTCACTCCTCCCAACCGAGCCAAATAAGGACTTCCCATCCTACTAAAGCCCCATCTCATCTGTCCAGTACTGTACCCCTGACCACATCCACACAGACAGAGCAAACATTGCCCAGGGACACAGTGGAACTGGTAGCCCCCGTCGGCCCAGAGCCCCAAACCGCGGCGAGAAGGAACCAGACCCCCAAAGCCGTCACCCTCCCAGTAACCCAGGTCGTGTCACTTTCAACCATCATCAACGGCAGCCAGAGTACTGGTGATGGAGTGATCATCAGCCATCACTGGGAGCAGGTTGGAGATCCATCCATAGAGCTTGGAGCTTTCTCGGACACACAGATTCTCAACCTATCCAACCTTGCCCCTGGGGAGTACACGTTCAGGTTGACCATTACAGATTCTGACGGGTTGTCAGACTCCACCATGGCTACAGTGAAAGTCATTCAGTCAGTGGAGAATGACCAAATGCCCTACCCCAGCCATGTCACTCTCACCTCCAGCCCCGGTCTTGCTGCTACCCTGGCCCACAGGCAGGATGACCCTACTGCAGCTACCCCCTCTGCCAGAGCCTCTGTCACTCAGAAGACAGAGAACAAAATCACCCCCATAGCTGAGGTCAAGGTGTCAAACAGAGCCCCTGTGGCTATAGTGGGTCCTAACAGGCAGCTGACCCTCCCAGTGACCAGCGTCACCTTGGACGGAAGCAGCAGCACTGATGACCACGCCGTCACCAGCTACCACTGGGACACCATCAGAGGTCCTCCAGGGTCAAGGACACAGGGTGTGGACAAGCCCATAGCTATAGTAACGAGCCTCAGAGCGGGCCGCTATACATTTAGTCTGACTGTGAGTGACCAGGAAGGGCTGAAAGACAGTGCCTTGCTCACAGTCAGGGTTCAAGAGGCCAGAAGCCTTCCACCTGTAGCACATGCCAGCGGCAGCCACACCCTCACCCTGCCCAACAACTCCCTGGTGCTCAGAGGCTCAATGACGGATGGTGACCCAGCCACGGTGCACTTCCTCTGGGTCCGGGACAGTCAGAGCCCTGCTGCTGGCGACGTGCTGTATGGTTCAGAGCAGCAGGCCTCCCTGTACCTGGCCAACTTGGTGGAGGGGACCTATCTATTCCAGCTGCGTGTCACAGACACCCAGGGACGCAGCAGCACCGCCACAGCCACCATGGAAGTGCGGCcagACCCTGGTGGTcgtgaggaggtggaggtggagatgttGGTAGCGCTGGCCCAGGTGAGTGTGTCAAAGAAGGACACCGTGCTCAGACAGTTGGCCGCACTGCTCCACGTCCTGGACAATGGCATCCACCTAAGGGGCCTATGGGGACACTCAGATATCAGGTATTGCCCAATGCAGAAAATGCATACAAAGCACCCATTCCCTGGTCCTAAACTGGCCATTCTGCTGCGAAGTCAGCTGCTGAGGGAGAAGACTGAATACCTGCTCTTCAGAGTCCTTCGAGTGGATACAGTCATGTGCTTGCTCCGCTGCTCGGCGTGTGACCCAATCACCAAGGAGTGTGTCTGTGACCCCTTTTGGACAGAGAACCTCATTCGCCGGTTCTTTGGCGATGGAGAGAGCAACTGTGAGTGGCAGGTTCTCTACTTCATCCTGTCCTTCATGGTCATTGTCTTCATCGTGACAGTCACCTGGACGTGTGTCTACTGCTGCAAAAGgAGAAGGCGCACTAAGGTCAGGAAGAAAACCAAGTACACTATACTGGACAACATGGACGAACAGGAGAAAATGGAGCTGAGGCCCAAATACAACATCAAACACAGGAGCACGGAGCACAACTCCAGCCTCATGATGTCCGAGTCAGAGCTGGACAGTGACCAGGACACTGTCTTCAGTCGAGACCGACCGGTCCGGAGCAGAAACCGGACCAATGCTCAGGCTGCCCGCAACGGGAACACCTACGGATGAGCAGGAACGCACAGAACTGGGGTGGTTATTGTACAACATGAGTGAAACCCACTCTTGGGATTATGGCCGGGGTGCACAGCTCGAGTGCCATTGTGTCTGCTTGTTTTTGGTCTCGTTTTCTATTCAAATACTGGTTTCGACCAGATGTGTACTTTCTATGACATTCATTGGACAACTCAGCACCAGGGAGATGTGAAAATCCAAGGGCTGTAGGATAGTAGAGTTGGGCATCCCTGGATTCTGGGAAATAACAGTGGCATTAAGTTTACATGCATACAGACTGTAATTTGACACTAAGGATGAAGGTGCTCTTTGTGAGGAGGTTCTGTGGCCCCACATACTTCTACAGATAACCAGATTGGTGAATGCACATACAACTATCCATTATGCATACTAGTCTACCGACTACTACTGACCTTTAACTTTGCCTTGTTATCCAATGTTTTTTTACTGTCATTATTTTGTAGGAAATGGAGACAAGCCCAACCCTGGTTGTGAGCATCTGACGCCTCTCCTGTAAATGTTTTGACAAATTGGATTTGTCAAAATGGCTAGATGGAAAAGTCTAAATTCTTATGTTTAGTACCCAAAGTCCATCTTGTGATGCTACTCGTGAATCATTTAATCAGAATCAAACTCAATTTATCTGTGATCTGAGTGTCTTGGACTTTGACACAATACATCACAGCATTATATTGTATTTGAACTACTGTTTTGAGTTAGCACACTTGTCCTCCAAACTAGTTTTGGTATCTATCTCATTTTAAAGCTTCTTTATGCTAAATAAGCATAATGGGTCTCATAAATGGGCCCGAAGAAACAGAACCAGGCATTTCATGGGACAAGCCATAAAGGTGCCAAAATGCTCTATAAGCCTGTGGCTAACAGAGAGCCTATTATATCCAAGTACTTGGTAATGCATCCATTCTTCCTTCCCTTGGCAAGATCTATTATCTAACTTGAACATGGTGGGTAACATGCATTCAATCATtaattcctttgtgtaatgatggATTTTTCCTCCCTCTCATTCACTGTCAGAGAATGTCTGATTACATGAGTATAGTGCTAAATAATTAGGACACACAGTTTAAGGATTAAGAAGAGGACAGATGGAATTGATAATTAACATTACTATGCAGGACAGGTAGCCATTGATGGAATGGATCAAATACTTGACATTAAAGCAACATAAGCATGTCCAATGGTTGCTTTATATTTTTCTTCCCGTAAGGGACTGGGGAGATATTTCCCCAATATGGACAGAAACActaacagccatgttatattcatGGCTTTTTCCCATTACACCACCCAATTTTTGGTATTTGCTCTGTTTACTTAACTAATTACAGCTACCAATGTTTTTACAGAAAATTAAATGCATCAAATCAATGAACAGTGTTCTGAATTCTGTGTAATTTTCTTTCCTGTCCAAAATTAGTAAGATGTAAGGCAGTTTctaccaaccctggtcctccagaacCCTCGACAGCACAAATTGCTATTCCAACGCTGGACAagcatacctgattcaactaatcatcaagccctcaatgtgTTGAATGAGGgttgtccagggctacaacaagtgtgtactgttggggttactggaggaccagggttgggaaacactgatctaACGTAAACCAATTGATATTGTTTGACAAACAAAGTAACACAGtcatttatttaacattttatgAAGTACTCCATTAATATTTACAATAGTTagaaatatttttttacaatgagTGTCACAACCAGAAAACAGAATTGGTAAAATTATTCAAACGGCACTTGTTTGGCAAGAGACATTACTTCAGTTTCAGAGAACACTACAACATTTACATTGCAGGTTCAGATACAGAACATAGGTGGTACAAACTGTCTGAATATCAAAGGCAGCTCTACTGGATAATATATTGTATGTGGGAAGACTAGTTACCAACGACAATATAACCTGTACTAATATAGTGGCATGGTCTACAATAGTTTTTAGTAGTTAGGATAGTTAACTATTTACAGAggatgttacacagtacatttcaTTCTAACTGCTTAGCCCAACAAGGCTATTCCTCAACGGTTACCAAAATAGGGTCATTCATAATTTCACCACACTATTATCAAGTGACATATCTAATACAGCTGGGATCTGGATACAGCCAAGCCCCCTTTTCTAGAAAATAGCCAAATTATAAATAATCTTCCTATTAAAAACAGATTTAAGTCCCTTGTGCGTATCAATAATCTCAGTATTTGCAATTGATGTGCTTATTAAATCTACCCAACTCTATGCTAGGCTTCAAGTTCAAGTTATATAGTGCTTCTCATTAAGGGTCCAATCCTACATTGAGAACACACGTTTGTTTATTTGTATCTCAACATATGATTCAGCCCTAAAGGTCCAAATCGTTATGGGATCCCACAGGTTGGAGACTATTGGGTTATGTCCAAATACTATTGTGGCTTCCGATCCTCTTTAAGGGGCTACCCTTAAAAAGTTCCAATGCAGACGTTTTTATCTCAACATCAAATCATATCTGGGTAacaagtaccttactgtgattttgaacattttaattgaaaacaaaaggaacaaaaatagcttcttagcaaagagcaatttctcaaacaagaatTTTGCTAAGATTGGCTAGGAGTGGCCTGAGTGAGGAGGGGGAAAATGAGtggttattggcagagaggtttagaactctttcttattggtctattaaccaatttaccatCTGGTGATATCACCAGGCAGGCAATAACTTCAGGCGGTCTTTCCAAACAGCTCTTAAACTAAAAAAGGGCATGATCACCTTTTTCACAAAACTGATTCAACCTTAATGtggaaatgtataaaaaacaggAAATTCATGTTTTAGACTGCACTAGGTCTTTAACTAACATGGATAACTGGTTTGGGTTGTCACCATATTGCTTTCCCTTCACCAGTTCTTATAGGCCAGTGGTCAGAGAGGATAAGGAGAGGAAACCATGTAGAGCATGGAACATGGATTTCTCGGCAGTGATGAAGGCTCTCAATGAGGATGAGGATCAGAATCACAATAATTTGTGAAGGAATCATATTTGATGATTGACatcaattgttgttgttttttatgttAAATATGAGTAAGTAACTGTTACTAGA
>TU151255
ATGGGTCTCATAAATGGGCCCGAAGAAACAGAACCAGGCATTTCATGGGACAAGCCATAAAGGTGCCAAAATGCTCTATAAGCCTGTGGCTAACAGAGAGCCTATTATATCCAAGTACTTGGTAATGCATCCATTCTTCCTTCCCTTGGCAAGATCTATTATCTAACTTGAACATGGTGGGTAACATGCATTCAATCATtaattcctttgtgtaatgatggATTTTTCCTCCCTCTCATTCACTGTCAGAGAATGTCTGATTACATGAGTATAGTGCTAAATAATTAGGACACACAGTTTAAGGATTAAGAAGAGGACAGATGGAATTGATAATTAACATTACTATGCAGGACAGGTAGCCATTGATGGAATGGATCAAATACTTGACATTAAAGCAACATAAGCATGTCCAATGGTTGCTTTATATTTTTCTTCCCGTAAGGGACTGGGGAGATATTTCCCCAATATGGACAGAAACActaacagccatgttatattcatGGCTTTTTCCCATTACACCACCCAATTTTT
>TU151256
TGCCAAAATGCTCTATAAGCCTGTGGCTAACAGAGAGCCTATTATATCCAAGTACTTGGTAATGCATCCATTCTTCCTTCCCTTGGCAAGATCTATTATCTAACTTGAACATGGTGGGTAACATGCATTCAATCATtaattcctttgtgtaatgatggATTTTTCCTCCCTCTCATTCACTGTCAGAGAATGTCTGATTACATGAGTATAGTGCTAAATAATTAGGACACACAGTTTAAGGATTAAGAAGAGGACAGATGGAATTGATAATTAACATTACTATGCAGGACAGGTAGCCATTGATGGAATGGATCAAATACTTGACATTAAAGCAACATAAGCATGTCCAATGGTTGCTTTATATTTTTCTTCCCGTAAGGGACTGGGGAGATATTTCCCCAATATGGACAGAAACActaacagccatgttatattcatGGCTTTTTCCCATTACACCACCCAATTTTTGGTATTTGCTCTGTTTACTTAACTAATTACAGCTACCAATGTTTTTACAGAAAATTAAATGCATCAAATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945475.1 False 5672 mRNA 0.45 18 30485372 30505119
TU151255 False 531 lncRNA 0.57 1 30502746 30503276
TU151256 True 538 lncRNA 0.46 1 30502809 30503346

Neighbor

gene id symbol gene type direction distance location
decr1 decr1 coding upstream 125677 30352768 ~ 30359695 (+)
LOC110486570 LOC106580396 coding upstream 135402 30326490 ~ 30349970 (+)
LOC110486559 LOC106605466 coding upstream 164251 30314585 ~ 30321121 (+)
LOC110486531 LOC106605464 coding upstream 174103 30261473 ~ 30311269 (+)
LOC110486525 LOC106605463 coding upstream 236058 30234520 ~ 30249314 (+)
LOC110486625 LOC106605474 coding downstream 13324 30518443 ~ 30530346 (+)
LOC110486681 LOC106580557 coding downstream 27709 30532828 ~ 30542573 (+)
si:dkey-22o22.2 LOC106605377 coding downstream 112884 30618003 ~ 30746151 (+)
LOC110486724 LOC106581338 coding downstream 293661 30798780 ~ 30807966 (+)
plekhf2 plekhf2 coding downstream 316657 30821776 ~ 30844299 (+)
G131290 NA non-coding upstream 6395 30478752 ~ 30478977 (+)
G131286 NA non-coding upstream 10661 30474503 ~ 30474711 (+)
G131276 NA non-coding upstream 13759 30471159 ~ 30471613 (+)
G131266 NA non-coding upstream 26415 30458729 ~ 30458957 (+)
G131262 NA non-coding upstream 29913 30455230 ~ 30455459 (+)
G131304 NA non-coding downstream 26690 30531809 ~ 30532025 (+)
G131315 NA non-coding downstream 43116 30548235 ~ 30548448 (+)
G131279 LOC106605477 non-coding downstream 52447 30557566 ~ 30572768 (+)
G131406 NA non-coding downstream 75853 30580972 ~ 30581270 (+)
G131416 NA non-coding downstream 84794 30589913 ~ 30590180 (+)
G130414 NA other upstream 695541 29789576 ~ 29789831 (+)
LOC110486279 LOC106605442 other upstream 791521 29685855 ~ 29697686 (+)
G130308 NA other upstream 844276 29600026 ~ 29641096 (+)
G129155 NA other upstream 1000242 29484633 ~ 29485130 (+)
LOC110534631 LOC106580029 other upstream 1007242 29424822 ~ 29478401 (+)
G131491 NA other downstream 195063 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 242936 30748055 ~ 30749954 (+)
LOC110534710 LOC106605356 other downstream 786351 31262054 ~ 31294577 (+)
eaf1 LOC106581241 other downstream 855317 31360408 ~ 31366322 (+)
G132342 LOC100136303 other downstream 1352529 31834170 ~ 31887572 (+)
G131295 NA non-coding upstream 14781 30487745 ~ 30487965 (+)
G131293 NA non-coding upstream 15807 30486700 ~ 30486939 (+)

Expression


Co-expression Network