aldh5a1 (LOC106605473)


Basic Information

Item Value
gene id aldh5a1
gene name LOC106605473
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30503625 ~ 30509152 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945424.1
TTAAAGTCTGCTTGTGACTGAAAGTTGACAGATTTAAGACTACTAATGATGCAACGTACACATGTCTACATTTCAGGGAAGCTGGTTATAGTTTGTGTGCTCTTATTGGACGCAAGAGAAGATATCCAAGCGTGTGGATTGGCCAACTGAACACATCAATGGCGATGGGAAAGACCGACGATGTAACGCTGTAACAAACTAGTATCTTAGATACCGTCTCTGCATTGTAACGTATTGTAGCACTTGCAGTCAATACGAAGAATACATGCAGCTACACATTTGGTTGCTTTCGATAATGGCAGTTGTGTTATAATGTATACATTTTGAGCGAAGGAACACACGAATTATGGTTTAGTCAGTAATGTATTGTGTATGCGTGAATGTGTATGATCACGTGTTTAATGCGACCGCCTTCAAGACTGGTTCGAACTCGTATCTATCCACGGACGACAACCTTATTGAAATTCACAAGTCACTGCAGCAGTTTTGCTTTGACTGACAGCGAGACAGCATTCTACTTAACCTCTTGTGGACAAATATATTCTCGTGCTATGGGTAGTTTCTGTCTCCTAAGAAGTCTGTGTCTCCCCCGCCAGGTCGGCCTACCATTGGTCATGCATAGGCAATACAGCCTCGATATTTCCGCTCAGCTTCTCCGAACGCAGGGCTATGTGAACGGGCAATGGATCAATGCTCCCTCTACCTTCCCAGTGCTGGACCCAGCGACGGGGGAAGAGATTGCGAAAGTCGCCGACTGCGGTCCAGCAGAAGCTAAACTAGCTGTCGACGCAGCCTACAAGGCATTCTACTCCTGGAAGCAACACACAGCGAAGGAAAGAAGTGTCCTTCTACGGAAATGGTACGATCTGTTGACGTTGAACAAGGAGGACCTTGCTAAGCTGATCACCTTTGAGTGTGGCAAGCCCATGAAGGAGTCTCTGGGGGAGATTGCTTACGCTGCTGGCTTCCTGGAATGGTTCTCTGAGGAGGCACGCCGTGTCTACGGGGATGTTGTGCCCTCGGCTGCCAAGGACCGTAGGATCCTTCTGCTCAAACAACCTGTGGGTGTGGCCTCAATCATCACTCCGtggaACTTCCCCAGTGCTATGATCACCAGGAAAGTAGGTGCTGCCCTGGCCGCGGGCTGCACCATCGTGGTGAAACCTGCCGAGGACACACCCCTCTCTGCCCTGGCGCTCGCTGAGCTCGCAAGTCAGGCCGGGATCCCTGCGGGGGTGTTTAACGTGGTTCCCTGCTCCAGAGAGAAGACCCCCTCTGTTGGGGCGGTCCTCTGCACAGACCCCCTGGTGGGGAAGGTCTCCTTCACTGGATCCACTGCCACTGGAAAGATTCTCTTGAAGCTCGCCGCCGACACTGTCAAGAGGGTTTCAATGGAGCTGGGTGGCCATGCCCCCTTCATTGTGTTTGACAGTGCGGATGTGGACAAGGCTGTGGCGGGAGCCATGAACTCCAAGTTCAGGAACTCAGGACAGACATGTGTCTGCTCCAACCGCTTCCTGGTCCAGAGTAAGATCCACGATTGCTTCATAGAGAAGTTGGGGAAGGCCATGGATGCAGAGCTCCGTCTGGGCCACGGCTCTGACCCAAACACCACCCAGGGACCCCTCATCAATGTCCGTGCCTCTGAGAAGGTGGAGCACCAGGTAATGGATGCAGTGTCGCGGGGGGCCAAGGTGCTAAGGGGGGGGAAGCGTCTGGACGGCTCGTTCCATCAGCCCACTCTGCTGGCTGATGTCACCACAGACATGCTATGTACCAGAGAGGAAACCTTCGGTCCTCTCCTGCCTGTCATCAGGTTTAGCACAGAGAAGGAAGCACTTGCCATTGCCAATGCATCTCATGTGGGTTTAGCAGgatacttCTTCTCCCAGGACGTCAGTCAGATCTGGCGGGTGGCGGAGAATCTGGAGGTAGGCATGGTGGGGGTGAACGAGGgtctcctctccaccccagaGGCCTCCTTCGGCGGGGTCAAGCAATCGGGCCTGGGCCGTGAGGGCTCCAAGTATGGCATCGAGGAGTACCTGGACGTCAAGTACATGTGCTTTGGAGGGCTAACCCCCTGAGGGAACACTACACCCCCCCAACTCCTGGACTTCCCCAAGTAGGAAGCGGTGCATTTGGGAAAAGGGAGGATTCTTAGGCTCTAGTAACAGTTACTTACTCATATTTaacataaaaaacaacaacaattgatGTCAATCATCAAATATGATTCCTTCACAAATTATTGTGATTCTGATCCTCATCCTCATTGAGAGCCTTCATCACTGCCGAGAAATCCATGTTCCATGCTCTACATGGTTTCCTCTCCTTATCCTCTCTGACCACTGGCCTATAAGAACTGGTGAAGGGAAAGCAATATGGTGACAACCCAAACCAGTTATCCATGTTAGTTAAAGACCTAGTGCAGTCTAAAACATGAATTTcctgttttttatacatttccaCATTAAGGTTGAATCAGTTTTGTGAAAAAGGTGATCATGCCCTTTTTTAGTTTAAGAGCTGTTTGGAAAGACCGCCTGAAGTTATTGCCTGCCTGGTGATATCACCAGatggtaaattggttaatagaccaataagaaagagttctaaacctctctgccaataaccaCTCATTTTCCCCCTCCTCACTCAGGCCACTCCTAGCCAATCTTAGCAAAattcttgtttgagaaattgctctttgctaagaagctatttttgttccttttgttttcaattaaaatgttcaaaatcacagtaaggtacttgtTACCCAGATATGATTTGATGTTGAGATAAAAACGTCTGCATTGGAACTTTTTAAGGGTAGCCCCTTAAAGAGGATCGGAAGCCACAATAGTATTTGGACATAACCCAATAGTCTCCAACCTGTGGGATCCCATAACGATTTGGACCTTTAGGGCTGAATCATATGTTGAGATACAAATAAACAAACGTGTGTTCTCAATGTAGGATTGGACCCTTAATGAGAAGCACTATATAACTTGAACTTGAAGCCTAGCATAGAGTTGGGTAGATTTAATAAGCACATCAATTGCAAATACTGAGATTATTGATACGCACAAGGGACTTAAATCTGTTTTTAATAGGAAGATTATTTATAATTTGGCTATTTTCTAGAAAAGGGGGCTTGGCTGTATCCAGATCCCAGCTGTATTAGATATGTCACTTGATAATAGTGTGGTGAAATTATGAATGACCCTATTTTGGTAACCGTTGAGGAATAGCCTTGTTGGGCTAAGCAGTTAGAAtgaaatgtactgtgtaacatccTCTGTAAATAGTTAACTATCCTAACTACTAAAAACTATTGTAGACCATGCCACTATATTAGTACAGGTTATATTGTCGTTGGTAACTAGTCTTCCCACATACAATATATTATCCAGTAGAGCTGCCTTTGATATTCAGACAGTTTGTACCACCTATGTTCTGTATCTGAACCTGCAATGTAAATGTTGTAGTGTTCTCTGAAACTGAAGTAATGTCTCTTGCCAAACAAGTGCCGTTTGAATAATTTTACCAATTCTGTTTTCTGGTTGTGACActcattgtaaaaaaatatttctAACTATTGTAAATATTAATGGAGTACTTcataaaatgttaaataaatgaCTGTGTTACTTTG

Function

NR:

description
succinate-semialdehyde dehydrogenase, mitochondrial

GO: NA

KEGG:

id description
K00139 ALDH5A1; succinate-semialdehyde dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945424.1 True 3661 mRNA 0.46 10 30503625 30509152

Neighbor

gene id symbol gene type direction distance location
LOC110486614 LOC106580462 coding downstream 19265 30481004 ~ 30484360 (-)
pnp4b LOC106605471 coding downstream 89852 30394852 ~ 30413773 (-)
calb1 LOC106580458 coding downstream 120684 30364891 ~ 30382941 (-)
LOC110486577 pmvk coding downstream 151296 30348834 ~ 30352329 (-)
tmem79b LOC106605462 coding downstream 253980 30224586 ~ 30249645 (-)
LOC110486664 LOC106605475 coding upstream 706 30509858 ~ 30518027 (-)
gbp LOC106605477 coding upstream 48408 30557560 ~ 30558960 (-)
LOC110486705 ccne2 coding upstream 238903 30748055 ~ 30758543 (-)
LOC110486727 tp53inp1 coding upstream 252133 30761285 ~ 30773403 (-)
nagpa LOC106605373 coding upstream 270307 30779459 ~ 30798791 (-)
G131351 NA non-coding downstream 11693 30491829 ~ 30491932 (-)
G131348 NA non-coding downstream 17616 30485352 ~ 30486009 (-)
G131347 NA non-coding downstream 18363 30484791 ~ 30485262 (-)
G131341 NA non-coding downstream 31806 30471501 ~ 30471819 (-)
G131256 NA non-coding downstream 52172 30451091 ~ 30451453 (-)
G131358 LOC106605474 non-coding upstream 12353 30521505 ~ 30521863 (-)
G131360 NA non-coding upstream 16589 30525741 ~ 30527010 (-)
G131362 LOC106605474 non-coding upstream 18858 30528010 ~ 30528292 (-)
G131363 NA non-coding upstream 19257 30528409 ~ 30530321 (-)
G131366 NA non-coding upstream 23881 30533033 ~ 30533458 (-)
LOC110486376 LOC106605451 other downstream 625057 29859575 ~ 29878744 (-)
LOC110534614 LOC106605399 other downstream 2025794 28475823 ~ 28533709 (-)
G129582 NA other downstream 2192893 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 2353639 27933389 ~ 28149986 (-)
G129250 NA other downstream 2737093 27766157 ~ 27766532 (-)
c2h8orf37 cssa05h8orf37 other upstream 380541 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 387874 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 683267 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 687921 31196917 ~ 31199241 (-)
G132197 NA other upstream 1026895 31536047 ~ 31543009 (-)

Expression


Co-expression Network