LOC110486681 (LOC106580557)


Basic Information

Item Value
gene id LOC110486681
gene name LOC106580557
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30532828 ~ 30542573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558454.2
TGTGCTCGTTGCTactcaacattttgaaaaagcacCGCGAGCTAAAAGGGTTAGAACAATCCGGAATCATTGGTTCCTCCATACCATAACATTAACCCCTACCATTAACCACAACCCttacctaaccataaccttaaaccATTTTTGTATTTCAACTTTAAAGGGATAGGGACGTCCACAATAACAAGGACAGAGCCAAGATGGTCGAGTGCGCGGTGCGCATCTGAGGTCATAGAGCTGTCTGAAACGCACGGAGTTTTGTCATGTTTTCTTCGAGTAACTGGCGCTCTTTTCACTTCTGCTCACAAGAAGATAAGAATCATGACCAACACTAGTGTCAAAACGCATAGCTGGCTGTTTTACGCAGAGTATAAAAAATAACTTGGCTAATGGAGAGAATGGAAATCTCAACCATCCCTTTTATCAAGATGAAAACTCTCGATATATAGCCAGGTGCCCTTCAGGTTTTCCCCTCCACCCCAGGCAGGCCTGTGACCGCCATGATGAGCAGCTCATCCAGCCCAGCTGAGTTCTACAGGGACAGCACCTCCCTCCTGTCCATAGACTCCAGCGTCTTCTACAGCGAACCCCCTCCTGTCTGTGGCAACCCACTGGACTTCTTCACCATCAATGTGGGTGGCAGCCGCTACGTTCTCTCCCAGGAGCTGCTGGCATCCCACCCAGAAACCCGGCTGGGCAAGCTGGCCCTGTCCACACGGGACTCTGCCCTAGAGCTCTGCGACGACACTGACTTCCTGGAGAATGAGTTCTTCTTCGACCGCAACTCACAGACCTTCCAGTATGTGATAAACTTCTACCGCACAGGCCACCTGCATGTCAGGGAGGAGCTTTGCGTGCTCTCCTTCCTCCAGGAGATTGAGTACTGGGGCATCGACGAGCTCTGCATCGATCCCTGCTGCCGGGGACGCTACTACCGCCGCAAGGAGCTCAAGGAGAGCCTGGACATGCGGAACGAGGCTGAGGCTGACGAAAGCCAGGACGAAGACTTCAACGACGCCGCGTGCCCAGATCTCCGCCGGCACCTGTGGGACCTGCTGGAGAAGCCAGAGTCTTCACGAGCGGCTCGCGCCTTCGGCACGCTGTCAATCATCTTCGTGGCGGTATCCATTGTCAACATTGTGCTCATCTCGCTGGACCTGGGGGATGTGGGTGGGAACGGGATCGGTGACGAGAGTGGGGGCAGTGACGGGGGTACACCTTTCTTCGTGGATGCACTGGAATATGTGTGCGTGGTGTGGTTCACTGGCGAGCTGGTGCTACGCTTCATCTGCGTACGCGACAAGTGCCGCTTCACCCGTAGTGTTCCCAATGTGATCGACCTGCTAGCCATCCTGCCCTTCTATGTGACTCTGGCAGTTGAGATTCTGCACGGTGGCTCTACAGAGCTGGAGAACATGGGCCACGTGGTGCAGTTGCTCAGGCTCATGAGGTCCCTGCGCATGCTCAAACTGGGACGCCACTCCACAGGCCTCAAGTCCCTGGGCCTGACCATTGCCCAGTGCTACGAAGAGGTGGGtctcctgctcctcttcctctccgTGGGCATCTCCATCTTCGCCATGGTGGAGTTTGCCCTGGAGCATGACATCCCCGGTACCTCATTCAGCAGTGTGCCGTGTGCCTGGTGGTGGGCCACCACCTCCATGACCACGGTGGGCTACGGAGACATCCGCCCCGACACCACCCTGGGCAAGGTGCTGGCCTTTCTCTGCATCTTGTCTGGCATCCTGATCTTGGCACTGCCCATCGCTATCATCAACGACCGCTTCTCTGCCTGCTACTTCACTCTCAAGATGAAGGAGGCGGCGCTGCGGCACGGGGAGGCGCTCAAGAGGCTGGCGCGGGGTTCCCTGGGTGACTCGGAGGTGGGTGGGGCagcaaggggaggaggggtgaacCTGAGAGATGTTTACGCCAGGAGTGTGACGGAGATGCTGAAGctgcaggggagggagagggccAGCACGCGGAGTAGTGGAGGGGGTGAGCTCTGGTGGTAGTGTGGAAGACGGACCACAAGGGCAGCTGTGGAGAAAAAACTATGGAAAAAGTTAAGTCAATTGGGTTAAAGATGGAATCTGCAGTTGGGGGAAACAACACTACTGGCTGCTCCAccactgttgtttttgttgctgaGCTGAGGAGCGTCGCGAATCGTGGTAAAAATGTTAATCGCTGTGCTCTTATCGCACGTGCAATGAAGGGCGAAAAACATTGTAAGCTGACGTGGttgtttcaccattaaggattccagctttaggAATACCATCAGAATATGACAACAGTGTGTACAATGTATAGGACATATCTAAAGGATGATGGGGGGACAATTACTTAAATGTCACCTGAAAGATTTGCCACAACTTTCATGCCTAACCTTTTTCGGTGTTGTGTTCTCTGACACAACTGTTGCATGTTCTGTCTCCTCTGTATGTgacacatgaccatctgatcatttatcactccagtgttaatctgcaaaattgtaattattcgcctaccttctcatgccttttgcacacaatgtatatagactatttttttctactgtgttattgac

Function

NR:

description
potassium voltage-gated channel subfamily V member 1-like

GO: NA

KEGG:

id description
K04934 KCNV1, KV8.1; potassium channel subfamily V member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558454.2 True 2581 mRNA 0.53 3 30532828 30542573

Neighbor

gene id symbol gene type direction distance location
LOC110486625 LOC106605474 coding upstream 2482 30518443 ~ 30530346 (+)
LOC110534660 LOC106605472 coding upstream 27709 30485372 ~ 30505119 (+)
decr1 decr1 coding upstream 173133 30352768 ~ 30359695 (+)
LOC110486570 LOC106580396 coding upstream 182858 30326490 ~ 30349970 (+)
LOC110486559 LOC106605466 coding upstream 211707 30314585 ~ 30321121 (+)
si:dkey-22o22.2 LOC106605377 coding downstream 75430 30618003 ~ 30746151 (+)
LOC110486724 LOC106581338 coding downstream 256207 30798780 ~ 30807966 (+)
plekhf2 plekhf2 coding downstream 279203 30821776 ~ 30844299 (+)
LOC110534679 LOC106605381 coding downstream 308724 30851297 ~ 30856046 (+)
LOC110534689 LOC106605368 coding downstream 331160 30873733 ~ 30891386 (+)
G131304 NA non-coding upstream 803 30531809 ~ 30532025 (+)
G131295 NA non-coding upstream 44863 30487745 ~ 30487965 (+)
G131293 NA non-coding upstream 45889 30486700 ~ 30486939 (+)
G131290 NA non-coding upstream 53851 30478752 ~ 30478977 (+)
G131315 NA non-coding downstream 5662 30548235 ~ 30548448 (+)
G131279 LOC106605477 non-coding downstream 14993 30557566 ~ 30572768 (+)
G131406 NA non-coding downstream 38399 30580972 ~ 30581270 (+)
G131416 NA non-coding downstream 47340 30589913 ~ 30590180 (+)
G131421 NA non-coding downstream 50092 30592665 ~ 30593696 (+)
G130414 NA other upstream 742997 29789576 ~ 29789831 (+)
LOC110486279 LOC106605442 other upstream 838977 29685855 ~ 29697686 (+)
G130308 NA other upstream 891732 29600026 ~ 29641096 (+)
G129155 NA other upstream 1047698 29484633 ~ 29485130 (+)
LOC110534631 LOC106580029 other upstream 1054698 29424822 ~ 29478401 (+)
G131491 NA other downstream 157609 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 205482 30748055 ~ 30749954 (+)
LOC110534710 LOC106605356 other downstream 748897 31262054 ~ 31294577 (+)
eaf1 LOC106581241 other downstream 817863 31360408 ~ 31366322 (+)
G132342 LOC100136303 other downstream 1315075 31834170 ~ 31887572 (+)

Expression


Co-expression Network