gbp (LOC106605477)


Basic Information

Item Value
gene id gbp
gene name LOC106605477
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30557560 ~ 30558960 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558465.2
GGTTACTTGATTACTTGCTTTTCTGCCGAGCAACGTGGTGAGAGGAAGGAACTGAGCTACGCTCCCATTCATTTCGAAAATACAGCTGAGAAACACACAAAATACAACAAAATGCCTTGTCGAAAGGAGAACTACATCCTCTTGGAGCAGTCTGTTACCGTCGATTCGAAAGAAGTGGACGCTTTGGTCACGAAAATCGGCGAGGCGCTGCAGCTTCACAACAATAGTGCTAATCAAAAGACGATGTCGTGTCTCCACGGTCTCAACGGCAACTGCAGCAGTAGCAACATCAAACAagctaacaacaacaacaatggcGTGGCCCAGCAAAAACGAACCGGGTGCTGCATACGGCTTCGAAACCGGGGGCAACGTAGTAACAGAGCTAGTCCATACAGCTTCCCTGGCTCAAGTAACCAGGAGTGGGACAATTTCAAACCTTGGAACCGAAAGAGGATCAGCGCAGCTGTCGAGAACGACGACCCACATCAGTTACTTCAGGAATTAATATTGTCTGGGAATCTAATCAAAGAAGCGGTCAGGCGGCTGCAGTTCTCTACGACGGAGTGTGGAGATCTTTCGGACAATCTGTAATGCTGATGATGCGGACAATGTATTCATTATCGAGATGTTACGGACAAAACGAAAATACTATTTTGCTGACCTAGCCAGCTATAacgttatactatacatgtttaACGATTAAATATGTCATGGTGGTAACGTTAGTATGTCTAATTTGTGAACGCTAATTTAGGGTTTTCATTTAGCCAATTAACGTTAGCCATGTTTGAAACTCCACCTTTTGATGGttcatttagatttttgtttaTGGGTTGGGACTCTCCTTTTCACTACTCGCTGGCTTAGTTTGTAGCTAGTTATGTAAACCAAGTGAACGCTTTACGTTGACCTAGTTTACAAATCGTAATCTCAGGCCGCCAGTATTGCCTGTTTTGTATTTGTCCGTTAAATTTGAAACGATTCAAATCAAAGGTCTTACGTTACTAGTTAGCATGCTAGGCTAGCGCCACACTCATGCCAGGATGAATTCCAAACGTCCCTAGCAACCCAACACTGACGGCAGCTTTGTATTTCCTTTACAAAGAAGGAACGGGATCAACAACGAGCTACCAAAACCGTGTAAGAGCCGGAGTCAGGCGACATTTCAAATGGTTGACTAAATGTCTCTTCGAACTGTCTGGGGGCggtgtattttttttataatgaTGGGACACTTGTGCTTAACCTTATAATTCCAATGCGGATTTGTGTTTATCATTTTCCAATTGTCTGTCAAGTTATTTACCATGACCACTTCGCAACGAAGTATTTCCTAATGTTCCTGAGTATTCAGGCCTTTTGGTGTCTTAAAATAAACacggtgttttttttcttcaa

Function

NR:

description
GSK-3-binding protein-like

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG:

id description
K03096 FRAT2; frequently rearranged in advanced T-cell lymphomas 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558465.2 True 1401 mRNA 0.43 1 30557560 30558960

Neighbor

gene id symbol gene type direction distance location
LOC110486664 LOC106605475 coding downstream 39533 30509858 ~ 30518027 (-)
aldh5a1 LOC106605473 coding downstream 48408 30503625 ~ 30509152 (-)
LOC110486614 LOC106580462 coding downstream 73200 30481004 ~ 30484360 (-)
pnp4b LOC106605471 coding downstream 143787 30394852 ~ 30413773 (-)
calb1 LOC106580458 coding downstream 174619 30364891 ~ 30382941 (-)
LOC110486705 ccne2 coding upstream 189095 30748055 ~ 30758543 (-)
LOC110486727 tp53inp1 coding upstream 202325 30761285 ~ 30773403 (-)
nagpa LOC106605373 coding upstream 220499 30779459 ~ 30798791 (-)
c2h8orf37 cssa05h8orf37 coding upstream 330855 30889693 ~ 30896340 (-)
trnas-aga NA coding upstream 335921 30894881 ~ 30894962 (-)
G131372 NA non-coding downstream 13362 30543929 ~ 30544198 (-)
G131371 LOC106580557 non-coding downstream 15019 30541589 ~ 30542541 (-)
G131368 LOC106605476 non-coding downstream 21067 30536211 ~ 30536493 (-)
G131366 NA non-coding downstream 24102 30533033 ~ 30533458 (-)
G131363 NA non-coding downstream 27239 30528409 ~ 30530321 (-)
G131419 NA non-coding upstream 32184 30591144 ~ 30591375 (-)
G131420 NA non-coding upstream 32897 30591857 ~ 30592124 (-)
G131436 NA non-coding upstream 43195 30602155 ~ 30602390 (-)
G131447 NA non-coding upstream 49446 30608406 ~ 30608639 (-)
G131577 NA non-coding upstream 80684 30639644 ~ 30679587 (-)
LOC110486376 LOC106605451 other downstream 678992 29859575 ~ 29878744 (-)
LOC110534614 LOC106605399 other downstream 2079729 28475823 ~ 28533709 (-)
G129582 NA other downstream 2246828 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 2407574 27933389 ~ 28149986 (-)
G129250 NA other downstream 2791028 27766157 ~ 27766532 (-)
trnae-cuc LOC106605367 other upstream 338066 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 633459 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 638113 31196917 ~ 31199241 (-)
G132197 NA other upstream 977087 31536047 ~ 31543009 (-)

Expression


Co-expression Network