LOC110486705 (ccne2)


Basic Information

Item Value
gene id LOC110486705
gene name ccne2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30748055 ~ 30758543 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945520.1
TTTCGCCCTGTCTCCGTTTCAGTGGATCATTTTCGGTGGAACTCTGAAGCCTTCAATTGACAGAATGGCTAACGTTAGACGCAGTGGTCGCATCACATTGAAAGCAAGAGATGAGAACGCACCAGAAGAGAATGTCAAGATCAGACGAAAAAGAAAATCTGAGCCATCCAAAAAGATGCCACCCGCAGTGAAGAAACAAAGCTATGAAATTCAGAAACGGTGGTCAGAAGAAGGGGCAAGTCCATGTGTCCTCGTAGAAACGCCACACAAGGAGCTGGAGATGACAAGAGACCGGTCTAGCTTCAAGCAGTTCCGATTCAAGAACATCTTCATCAAGACCTCACCGCTGCCCTGCCTCAGCTGGGCCAGCTCAGATGACGTGTGGATTAAGATGCTGAACAAGGAGCTGAAGTATGTCCATGACAAGGGCTTCCTACAGCAGCACCCCAAACTAAAGCCCAAGATGAGGGCCATTCTCCTGGACTGGCTTCTAGAGGTGAGTGAGGTGTACACTCTGCATCGACAGACTGCTTATCTGGCTCAGGACTTCTTTGACCGCTTCATGCTGACACAGGACGATATGGAGAAGGACCGACTGCAGCTCATAGGCATCACAGCCCTCTTCATCGCGTCTAAGATGGAGGAAATCTACCCTCCAAAGCTCCATGAGTTTGCCTACGTTACTGACGGCGCCTGTGAGGAAGATGCGATCCTGGAGATGGAACTTGTCATGTTGAAGGCGCTGAACTGGAACCTGTGTCCAGAGACAGTGATCACATGGCTTAAGCTCTATGCTCAGGTGGAGTCCCTAAAGGATGGCGTCAACTTCCTGGTACCTCAGTTCTCTCAGGACACCTACATCCAGATCACACAGCTTTTAGACCTGGCCATACTGGACATCAACTGTCTGGACTACCAGTATGGGATACTGGCTGCTGCTGCCTTCTGCCATTTTTTCTCATTTGACGTTGTCCACAAAGTATCAGGTCTGACGTGGGATAGTATTGCTCCCTGTGTCCGGTGGATGAGCCCCTTCATGCGCACGGTCAGCGCCTGTCCCAGAGCAGAGCTCAAAGACTTTAAGAAAGTGACGTCTGACGACAGACACAACATCCAGACCCACGTAGACTACCTGTCCATGCTGAGCGACGCTCACCAGAGGCAACCGGACAGCCAAGACAGTCTGTCGCCTGCTGCCATAGGAGGGATATTGACTCCACCAAAAAGCACAGAGAAACCAGCCAATCACTGAGCCCCAGGGTCTCCTCGTGTTGATCTTCTGGCCAACCCGATGAAGGGAGAATTCCCTAGACGTCACGCCTGACCAGTCGGAGGCCGGGAAACTTAACTTCGGAACCTCATCCTCacgtgaccaatcaaatttgccTTTTGGTAATAACTCACCTTTGTGTAGCATGTTAAGAGGTGTTATTTTACTTTATATACCAAGCTGGATATCAGAGTATATATGCAGTACAACCATGGAAATTAGCTCATGGTTACTATATTGACTTATTTAGTCAAATGATTGCAACAAAAACCCTGTTCTCATAATCTTAATCCCCAGAATTAGAATTTTACATGGAGATAATTTGAGGTGAATCAAATCTTTCTCCATAGGAAACATGTCTGCTGCTCCCTCTTTTACTTGAAGCTGAACATCTCAATACATGGGATGTTTTGATAGCTAAAAAGCGAATATTTTATTTGGTACATAATACACAGTTGAGTTGCTCAACTCAGTCTCTTAGCATTGTGGTATCGTATGTATTTAGTGCTGTTTAGTCTAAATCTGGGTACTCCTGGGAAAGCTCAGCCGTACAATAACGCCGAAAGAAGTATTGATGTTTGCTGTGGTTACGTTTGAACATTTGAGCCGTTTTGAAAGGGTTGTGCAGGGTTAACTGTTTACGATACCATCTTGAGCACCATTTTTGAACGTATGTATTCTCTCCACTGTGAACGACTCACTTCCATGTGCCTGGTGCATTCTCCTGCCACAACACATTCCTGGAACACTTGACTTCAGTAGTTTGATTTTAGGCCTCTTGGACCAATTTACAACCATGTCATTTTAAACTTGTATTTATTTGTTCATTTAAGCCTTACAATGTTTTTATCTCCGTATATACATTCTTCATAGGGCTATGAATTCAGTTCTTTAACAATGCCAAAGGAAGGCAACCTATTTAAGTCACGGGATGCATGTTATTTATGATTTTGACattgttatggggggggggggtataatgcAGTTACATATGAAATGTTATGTTGCGTAGTTTTGCGCTAGCCTGTCCGTGGTGCCGTAGTTGAACTAGTATGGTGCTGTAAAGACTTGAGAACCCAGAGGCTCCAGTGGAGGGCTCTAACACCCAGTCTGTCCAGCAAACCTGTGACTGTCAACTGAACCCTTCAGTGTTGTGCAGATGCCTGCCGAGGCAGCGGTATACAAAGAACCATGTTTAAACTGTAAATACCCATGTGTATATGTTATGTACATAAACTGAATGTTCTGTTTTCTAATGGGAACATGAAATGTATTGAATAAATGAAATGGAAATTAA
>XM_021558487.2
GCACTTGCCATGGAATGGTCATATATATAAAGATTGGCGCCGGCGCGACAGCTGATCATTCATTATTCGTTCATTCATTTCTGAGGTGGATCATTTTCGGTGGAACTCTGAAGCCTTCAATTGACAGAATGGCTAACGTTAGACGCAGTGGTCGCATCACATTGAAAGCAAGAGATGAGAACGCACCAGAAGAGAATGTCAAGATCAGACGAAAAAGAAAATCTGAGCCATCCAAAAAGATGCCACCCGCAGTGAAGAAACAAAGCTATGAAATTCAGAAACGGTGGTCAGAAGAAGGGGCAAGTCCATGTGTCCTCGTAGAAACGCCACACAAGGAGCTGGAGATGACAAGAGACCGGTCTAGCTTCAAGCAGTTCCGATTCAAGAACATCTTCATCAAGACCTCACCGCTGCCCTGCCTCAGCTGGGCCAGCTCAGATGACGTGTGGATTAAGATGCTGAACAAGGAGCTGAAGTATGTCCATGACAAGGGCTTCCTACAGCAGCACCCCAAACTAAAGCCCAAGATGAGGGCCATTCTCCTGGACTGGCTTCTAGAGGTGAGTGAGGTGTACACTCTGCATCGACAGACTGCTTATCTGGCTCAGGACTTCTTTGACCGCTTCATGCTGACACAGGACGATATGGAGAAGGACCGACTGCAGCTCATAGGCATCACAGCCCTCTTCATCGCGTCTAAGATGGAGGAAATCTACCCTCCAAAGCTCCATGAGTTTGCCTACGTTACTGACGGCGCCTGTGAGGAAGATGCGATCCTGGAGATGGAACTTGTCATGTTGAAGGCGCTGAACTGGAACCTGTGTCCAGAGACAGTGATCACATGGCTTAAGCTCTATGCTCAGGTGGAGTCCCTAAAGGATGGCGTCAACTTCCTGGTACCTCAGTTCTCTCAGGACACCTACATCCAGATCACACAGCTTTTAGACCTGGCCATACTGGACATCAACTGTCTGGACTACCAGTATGGGATACTGGCTGCTGCTGCCTTCTGCCATTTTTTCTCATTTGACGTTGTCCACAAAGTATCAGGTCTGACGTGGGATAGTATTGCTCCCTGTGTCCGGTGGATGAGCCCCTTCATGCGCACGGTCAGCGCCTGTCCCAGAGCAGAGCTCAAAGACTTTAAGAAAGTGACGTCTGACGACAGACACAACATCCAGACCCACGTAGACTACCTGTCCATGCTGAGCGACGCTCACCAGAGGCAACCGGACAGCCAAGACAGTCTGTCGCCTGCTGCCATAGGAGGGATATTGACTCCACCAAAAAGCACAGAGAAACCAGCCAATCACTGAGCCCCAGGGTCTCCTCGTGTTGATCTTCTGGCCAACCCGATGAAGGGAGAATTCCCTAGACGTCACGCCTGACCAGTCGGAGGCCGGGAAACTTAACTTCGGAACCTCATCCTCacgtgaccaatcaaatttgccTTTTGGTAATAACTCACCTTTGTGTAGCATGTTAAGAGGTGTTATTTTACTTTATATACCAAGCTGGATATCAGAGTATATATGCAGTACAACCATGGAAATTAGCTCATGGTTACTATATTGACTTATTTAGTCAAATGATTGCAACAAAAACCCTGTTCTCATAATCTTAATCCCCAGAATTAGAATTTTACATGGAGATAATTTGAGGTGAATCAAATCTTTCTCCATAGGAAACATGTCTGCTGCTCCCTCTTTTACTTGAAGCTGAACATCTCAATACATGGGATGTTTTGATAGCTAAAAAGCGAATATTTTATTTGGTACATAATACACAGTTGAGTTGCTCAACTCAGTCTCTTAGCATTGTGGTATCGTATGTATTTAGTGCTGTTTAGTCTAAATCTGGGTACTCCTGGGAAAGCTCAGCCGTACAATAACGCCGAAAGAAGTATTGATGTTTGCTGTGGTTACGTTTGAACATTTGAGCCGTTTTGAAAGGGTTGTGCAGGGTTAACTGTTTACGATACCATCTTGAGCACCATTTTTGAACGTATGTATTCTCTCCACTGTGAACGACTCACTTCCATGTGCCTGGTGCATTCTCCTGCCACAACACATTCCTGGAACACTTGACTTCAGTAGTTTGATTTTAGGCCTCTTGGACCAATTTACAACCATGTCATTTTAAACTTGTATTTATTTGTTCATTTAAGCCTTACAATGTTTTTATCTCCGTATATACATTCTTCATAGGGCTATGAATTCAGTTCTTTAACAATGCCAAAGGAAGGCAACCTATTTAAGTCACGGGATGCATGTTATTTATGATTTTGACattgttatggggggggggggtataatgcAGTTACATATGAAATGTTATGTTGCGTAGTTTTGCGCTAGCCTGTCCGTGGTGCCGTAGTTGAACTAGTATGGTGCTGTAAAGACTTGAGAACCCAGAGGCTCCAGTGGAGGGCTCTAACACCCAGTCTGTCCAGCAAACCTGTGACTGTCAACTGAACCCTTCAGTGTTGTGCAGATGCCTGCCGAGGCAGCGGTATACAAAGAACCATGTTTAAACTGTAAATACCCATGTGTATATGTTATGTACATAAACTGAATGTTCTGTTTTCTAATGGGAACATGAAATGTATTGAATAAATGAAATGGAAATTAA

Function

symbol description
ccne2 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in G1/S transition of mitotic cell cycle and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within regulation of cell cycle. Predicted to be part of cyclin E1-CDK2 complex and cyclin E2-CDK2 complex. Predicted to be active in centrosome; cytoplasm; and nucleus. Is expressed in brain; digestive system; head; and proliferative region. Human ortholog(s) of this gene implicated in castration-resistant prostate carcinoma. Orthologous to human CCNE2 (cyclin E2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K06626 CCNE; G1/S-specific cyclin-E1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945520.1 False 2567 mRNA 0.45 11 30748055 30752717
XM_021558487.2 True 2631 mRNA 0.45 12 30748055 30758543

Neighbor

gene id symbol gene type direction distance location
gbp LOC106605477 coding downstream 189095 30557560 ~ 30558960 (-)
LOC110486664 LOC106605475 coding downstream 230028 30509858 ~ 30518027 (-)
aldh5a1 LOC106605473 coding downstream 238903 30503625 ~ 30509152 (-)
LOC110486614 LOC106580462 coding downstream 263695 30481004 ~ 30484360 (-)
pnp4b LOC106605471 coding downstream 334282 30394852 ~ 30413773 (-)
LOC110486727 tp53inp1 coding upstream 2742 30761285 ~ 30773403 (-)
nagpa LOC106605373 coding upstream 20916 30779459 ~ 30798791 (-)
c2h8orf37 cssa05h8orf37 coding upstream 131272 30889693 ~ 30896340 (-)
trnas-aga NA coding upstream 136338 30894881 ~ 30894962 (-)
trnas-aga-2 NA coding upstream 137600 30896143 ~ 30896224 (-)
G131630 LOC106605377 non-coding downstream 16754 30730724 ~ 30731301 (-)
G131629 NA non-coding downstream 18408 30729432 ~ 30729647 (-)
G131628 LOC106605377 non-coding downstream 19081 30728577 ~ 30728974 (-)
G131620 LOC106580611 non-coding downstream 28065 30719750 ~ 30719990 (-)
G131619 NA non-coding downstream 28345 30719394 ~ 30719710 (-)
G131661 NA non-coding upstream 51781 30810324 ~ 30810727 (-)
G131663 NA non-coding upstream 56130 30814673 ~ 30815862 (-)
G131712 NA non-coding upstream 156795 30915338 ~ 30918439 (-)
G131723 NA non-coding upstream 342436 31100979 ~ 31101745 (-)
G132020 NA non-coding upstream 393048 31151591 ~ 31175420 (-)
LOC110486376 LOC106605451 other downstream 869487 29859575 ~ 29878744 (-)
LOC110534614 LOC106605399 other downstream 2270224 28475823 ~ 28533709 (-)
G129582 NA other downstream 2437323 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 2598069 27933389 ~ 28149986 (-)
G129250 NA other downstream 2981523 27766157 ~ 27766532 (-)
trnae-cuc LOC106605367 other upstream 138483 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 433876 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 438530 31196917 ~ 31199241 (-)
G132197 NA other upstream 777504 31536047 ~ 31543009 (-)

Expression


Co-expression Network