LOC110486727 (tp53inp1)


Basic Information

Item Value
gene id LOC110486727
gene name tp53inp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30761285 ~ 30773403 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558542.2
TTAGTTCGCCTCAACAATAACAAAGGGAACAGTGGGACCTCGGAAAGGCTCGGAAAAGTAACGAACTGTGTTGTTCCGAAAACAAAGGTCCATGTACTAAATTTCTTCCGTgaagaaaacttttttttatatTCTCGAAAAGATACAATCTACCTCAAAGGATTTTATCACTAAATATCCGTCCTTTGCTGTTAACATTTTTTCTTGCCGCAGgtcctttgTAATTTTGCACACGTCGAGGTGAGCTATGACCAGACTTTACACAGCTCCCCTCAGATGATAGACATCCGTACCTTATTGAAGCACTTTAACACCTGCAGCTGATGACCAAAACGCCTGTTCCTCGCACCGCTCAGCCCCCCCCCTTGGTCcctctgtgcccccccccaaggAGTTCCAGTATGTTCCAGAGGCTCACCAGTGTCCTGTTCGGGGACAATGTGGAGGAGGTGAGCCGGGGAGGCCCTGGAGAACAGGGCTTTGGCCAGAAGGAGGAGGGTGAAGAGTGGATCCTGGTGGACTATCTGGCCGAGGCCTGCTCTAGCCCCTGTGGTGATGGCCTGTCTGAGGTGGACCTGacttcagaggaggaggaggaccttgTGGTCGTCCCCTCTCCCATCGCCAGCTCCCCCATCCGCTATGCCTCCTGCTCCTCCCTGGACTCCACCGCCGATATCGAGGATGGGGATCCCGATGAGGAAGAGGGGGGTTTCCTGTGCCCGGAGGCCTGTTCTCTAGAGGAGAGCTGGTTCGTCACTCCCCCACCCTGCTTCAGCGGGGGGAGGAGGGGCAAGCCTATGGTACTAGAGACCAGTCCCCTGGAGAACCTGCTGATAGAACACCCCAGCATGTCTGTGTACACCACCCACTGTCCCCCACGAATCTCCCTCAAcctccctctcaatctctgtctcccccttgttGACGTACCTGCCGCCGTAGTCAAGGAGCCGGGTCGACGTTCGCTTGACACCCCCTGCCACAGGCCAGAGATGGTAGTGCAGCGCAGAGCCGGGCTCCATGCTGGCTGCTATGCAGCAGCCGTCTCAGCCCGGGCCTCAGGCCTCCTAGACCAGGTCCAGCAGCACGGACGCCTGGCCCAAAGGGTACGTGGCGCCGCCCAGCACCAGCTCCTCTCCCGCAACGCCCTACGCCGCCTCAACCTGCTGCGCACTAGAGGGGCCAAGCAGGCCAAGACCACCACCACCTATCTACACCAGCCTGGCCAGAGGCACCTCAACTACTGAGGTCCTGGCCCTATCCCTTACCCTCCATCCATCAATTCATCCATCTGTCTCAACCTGGATCCACGAAAAAGAGTTAATCCTGCAACATGCTCTCCATCTTCCCTCCATCCACCGATCCTCCACTCTGGAATGAAGAGACGTGATGAGGACTCCTTTAGAATCAATGCCATAGGTCACTTTACTCCGCTGCAGGTTCCCACCACCACATGGTAACTGGGAGAGACTGGTTCAATCAGATATTACACCTGTAGCGACACTCTCCGCTTTCACCCACACTGCAATGTTTGTGTGATGTCATAGTGTGGCTGTATGCGGCCATAGAATGGTTGTGTGATGTCATTGATTGATATCATGGAGTTGCTTGTATGCTGTCGTAGTGACATTGTAAGTGATGTCATTGAGCTGTTGTATGCTGTCATAGAGTGGTTGTGTGCTATCAGAAGAGGGTTTGTGTCTTAATAGAATGACTGTGATGTCTTTAGAGTAGGAGTAGGCATTTAGAAAAGGAGCATGTCTTTCACTTGTAATTAGGACAGTTTATTAACAAAGTTGTTTCTAATGTCCCTCCTATGAAATTGCTTCCTCTATCACTTCATGACAAACTAATATAATTTGTCAACTTACTTTTCAAAATCATCACCCTCTCTTGACTATGGGTGAACCTGCCTTGAACTTAGTAATTCAGTACTTTCACAATATTGATTGAGGAAATGTTGGTCAAATACTGGGTTAAATATCACTTAACGCCTTGTTATAAAAGTAGAATTTAAgatgaaaaataaatgtaaaatgtattataAAAAAAACGtccaaaatatttttaaaaagaaaAAACCGTATATTACATATCAGTATGAAGTTAGTATGAGTGTTTATCTACATAGGTATGTTTGTAAGCAGTGGTGTGACTATGTTAGTGTGTGATTTGTTGCATGGTTGTATAGCGCTagaaaacagaaaaaaaatgtgtttttgtatctTATCTCTCATTGTTTGTTCTAAATCTGCAGTCCACTTCTCAGGGTCATAGCCAATCACCTTTACACTTTACTACAATGCAGATTACTTGACCGATGTTAATTGTCTTTGTACATACTGGAGACCTTCCAAATTTGTCATAGTGTGCTTTGCCTTGTGGTAATGTTTGTGATCAATGATTGACCTTTTAAAAGAATCGTGTGCGTCTCGAGAAAATTGAATTTGAACGTTTGCTTGTCCAAGGACTGTGAAAATGAACTCCTACTCTCTCAATCGACTGTTATAACCCCAAGATGGAGTGAAACTGTCTTTTTTTCAtttttgtttatatattttttctgtgtACTTTCCATTGTTTTGAGATAGATATTTACCCTGTTCTTTATTTGCTTAGTTACATAACTTAATAATATTATGATAAAATATCAACCAAAAAAGTAGCGGCAAACTCTAACCTTGCAATAGTTTATATTACTATTGTTTTTGCTTTTACAGTATATTCTTCTTTACTTTAACAATGTTTGCAAATTGAAGACTTTGTTCTGAAATGGTCAAGTTTGTGACAACATGAATCTGTGCGCTCTTGTGGTAAGAAAGCACAGAGAGACACAATTCAAACACCTAAGTAGCCTATTTTAAGTTTCACAGAACCTCTAAAAGTCAAGTATCCAGGGCAAACTCAATCATTTACATGACCTAATTATTATGACCTTATATTATGACCTAATATCACCTGTTTCTTTGTACTTATTGGGGGAAatacacagtacatacatacTCAGATGTATTTAGCATGGTAGCATTAAGAAGCACTAAGGTGGTTTTGTTTGGTTTTGTCTATATAGTTGTAAACTGATTATAGTGAAGTGATTTAAGCCTAGTCATTGTATTTGTGTATCTTTTTTATTTTCAGATGTGTCAGATTGCAAAACTTGCATCATTTGACGCGTCAATTTTTGTACTGCATTGTTGTGACACGGGCAACAGGACGAAGGGAATGGAGGAGATGGCTAAGTCCTCATTTTTGATGTGTGAAGCTGGAAGGAGACATTTTGTTTTGTCCTCAGCTGTCTGTATGAGCTCTTGATGATAATAACAGGGATTTGTATTTTGTTTTATGCCTTGAATTTGTTGTGGATCACGTGCCTTCCAGGTTAAACAGTATAATGACAATGCATTAATGAAGAACTTGAACTGTTGTCCAAAAGGACAACACATACAAAAGCAAATCAACTATGCATACAGAAGGTAGCTTCTCTTCGTGAACCACCCAGCCCATGTACAGCTTTTATACACAAATGTAGCAAACCTGTTTTCTCCTGTGTGAAGAATATTTGGTGGCATTTTTTTTAGACTTTTGCTTTGATTTAGTTTACTGGAATAATACAGCACTTTGCCAAAAAAGTGTAGGAATTTGAGCGTTAACTGTTATTTATCTACTTAACTGATCGCATTATTTTATTTTGGATGTATGAGAGATCAATTCACTCTGTTTTTATGGTCAGCAAAatttgcaaatgagaatgtgGTAGTCTGTTCTAAAACTGTAATACATGATCTGTTGTCATGATGTAAGCCACAGTCTACAATAAATGTTTTCATACACATA

Function

symbol description
tp53inp1 Predicted to be involved in autophagosome assembly and positive regulation of transcription, DNA-templated. Predicted to act upstream of or within negative regulation of cell population proliferation; regulation of autophagy; and regulation of transcription, DNA-templated. Predicted to be located in PML body and cytosol. Predicted to be active in autophagosome and nucleus. Is expressed in nervous system and neural tube. Orthologous to human TP53INP1 (tumor protein p53 inducible nuclear protein 1).

NR:

description
tumor protein p53-inducible nuclear protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558542.2 True 3837 mRNA 0.43 4 30761285 30773403

Neighbor

gene id symbol gene type direction distance location
LOC110486705 ccne2 coding downstream 2742 30748055 ~ 30758543 (-)
gbp LOC106605477 coding downstream 202325 30557560 ~ 30558960 (-)
LOC110486664 LOC106605475 coding downstream 243258 30509858 ~ 30518027 (-)
aldh5a1 LOC106605473 coding downstream 252133 30503625 ~ 30509152 (-)
LOC110486614 LOC106580462 coding downstream 276925 30481004 ~ 30484360 (-)
nagpa LOC106605373 coding upstream 6056 30779459 ~ 30798791 (-)
c2h8orf37 cssa05h8orf37 coding upstream 116412 30889693 ~ 30896340 (-)
trnas-aga NA coding upstream 121478 30894881 ~ 30894962 (-)
trnas-aga-2 NA coding upstream 122740 30896143 ~ 30896224 (-)
trnae-cuc LOC106605367 coding upstream 123934 30897026 ~ 30899564 (-)
G131630 LOC106605377 non-coding downstream 29984 30730724 ~ 30731301 (-)
G131629 NA non-coding downstream 31638 30729432 ~ 30729647 (-)
G131628 LOC106605377 non-coding downstream 32311 30728577 ~ 30728974 (-)
G131620 LOC106580611 non-coding downstream 41295 30719750 ~ 30719990 (-)
G131619 NA non-coding downstream 41575 30719394 ~ 30719710 (-)
G131661 NA non-coding upstream 36921 30810324 ~ 30810727 (-)
G131663 NA non-coding upstream 41270 30814673 ~ 30815862 (-)
G131712 NA non-coding upstream 141935 30915338 ~ 30918439 (-)
G131723 NA non-coding upstream 327576 31100979 ~ 31101745 (-)
G132020 NA non-coding upstream 378188 31151591 ~ 31175420 (-)
LOC110486376 LOC106605451 other downstream 882717 29859575 ~ 29878744 (-)
LOC110534614 LOC106605399 other downstream 2283454 28475823 ~ 28533709 (-)
G129582 NA other downstream 2450553 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 2611299 27933389 ~ 28149986 (-)
G129250 NA other downstream 2994753 27766157 ~ 27766532 (-)
LOC110486852 LOC106605360 other upstream 419016 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 423670 31196917 ~ 31199241 (-)
G132197 NA other upstream 762644 31536047 ~ 31543009 (-)

Expression


Co-expression Network