LOC110486724 (LOC106581338)


Basic Information

Item Value
gene id LOC110486724
gene name LOC106581338
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30798780 ~ 30807966 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558527.2
GAAAACGTCCACTATAAATGACACGGAAATGCACAGTTGTAGCTGCTACATATTGTTCGCTAAATTAGCAAAGTTAACCAATAATTAACTAACTTGAGACAAATACTTTACCTAAAACGAGTGTTCTGTATTTAAAAATACAACAGAAAGCGGAACACAAATTAAATAGGGAGGAAGACTTTTGTTGCGACACAAGGTAAGGGTGAAAGTTGAAGGGTATGTTGTCAACATGGCATCTGGCATTAGTGCAAAGCATGGACTATTAACCACAAAATGTTCGGTATTTCACTCACTCCAAAGAAAGATATTGCCACACGCTATTTGCATTCAACGACCTACAGAAGTGAAATGTCTACGAGCTTCAACAAACTCGACTATAGAGTCGCAGCACAACGAAAAATACTGTATCGACATTGTGAGGTCTCGGGACTATGACGGTTTTGTGTCCTCCCTGCTTCTCCCTGAGGATGCGCGACGCTCCTCACTGGCCCTGAGGGCCTTCAATGTCGAGCTGGCTCAGGTGAAGGACTCTGTTTCCCAGAAGACTATAGGTCTGATGCGGATGCAGTTCTGGAAGACTACAGTGGAGGAGATCTACAGGGACGACCCCCCAGTGCAGCCTGTCAGTGCAGAACTATGGAGGGCGGTGAAGAAACACTACCTGACAAAGAGGTGGATGCTTAGGATAATCTCTGAGAGAGAGAAAGACATGGAAGACAGAGCTTATAGAAACCTCCAGGAGTTGGAGGCCTATTCAGACAATACCCAGTCCTCACTACTGTACCTTCTTCTGGAGAGTTTAGgtgtgaaagatGTCCATGCTGATCATGCTGCCAGCCATATTGGTAAGGCCCAGGGGATCGTGATGTGCCTAAGAGCCACGCCCTACAACAGCAGCAGACGCAAAGTCTACCTACCTATGGACATCTGCATGCTGCACAGAGCCTCCCAGGAGGACTTCATCCGAGGAAGCCGGGAACAGAATGTGAGGGATGTGGTATATGACATTGCCAGCCAAGCCCACGTACACCTACAACACGCCAGATCATTCAGCAAGAACATACCAGCTTCTGCTTTCCCTGCCTTCCTCCAAACGGTGGTGCTGGAAGACTACCTTCAAAGGGTGCGGCGGGTAGACTTTGATGTGTTCCATCCCAGCCTACAGAAAAGAAACCCACTGATCCCCATCCAGCTCTATTTCCGCTCCTGGAAGAAGACCTATTGACCTGTATAGTGGGACCTTATCGTTTGCCCTATTGTAATTTATACCAGGTTTAAACATCCGGTTTCCCAAAGTCCCGCTCTCGTATGTTGGTTTCTAAGTAGACCTATCTACAACAGTGGATTTCAAGAGACTCCTCCATCTATGATGTCAGCACTCCCCAAAAAAAGGATTCTGATCTAAAACATGCCTCTGCCATCTAAACCAGTTCACCTGTGTTATTCCCTGTTGTAGACTAGACAGCTGAGGACCACAGACAGAGATTATTGTAAAGCAATAACTACAGTACTGGAGACTGAACTGATGCCCTGATATATTGAGTATTTTCAGTAATAAATCGTGTAGCCATGTTGGTCTGTGTTTTCTCTCCTTTTTAAAGCTTAAATAAAGATGTCACAACCATAA
>XM_036945539.1
GAAAACGTCCACTATAAATGACACGGAAATGCACAGTTGTAGCTGCTACATATTGTTCGCTAAATTAGCAAAGTTAACCAATAATTAACTAACTTGAGACAAATACTTTACCTAAAACGAGTGTTCTGTATTTAAAAATACAACAGAAAGCGGAACACAAATTAAATAGGGAGGAAGACTTTTGTTGCGACACAAGGTAAGGGTGAAAGTTGAAGGGTATGTTGTCAACATGGCATCTGGCATTAGTGCAAAGCATGGACTATTAACCACAAAATGTTCGGTATTTCACTCACTCCAAAGAAAGATATTGCCACACGCTATTTGCATTCAACGACCTACAGAAGTGAAATGTCTACGAGCTTCAACAAACTCGACTATAGAGTCGCAGCACAACGAAAAATACTGTATCGACATTGTGAGGTCTCGGGACTATGACGGTTTTGTGTCCTCCCTGCTTCTCCCTGAGGATGCGCGACGCTCCTCACTGGCCCTGAGGGCCTTCAATGTCGAGCTGGCTCAGGTGAAGGACTCTGTTTCCCAGAAGACTATAGGTCTGATGCGGATGCAGTTCTGGAAGACTACAGTGGAGGAGATCTACAGGGACGACCCCCCAGTGCAGCCTGTCAGTGCAGAACTATGGAGGGCGGTGAAGAAACACTACCTGACAAAGAGGTGGATGCTTAGGATAATCTCTGAGAGAGAGAAAGACATGGAAGACAGAGCTTATAGAAACCTCCAGGAGTTGGAGGCCTATTCAGACAATACCCAGTCCTCACTACTGTACCTTCTTCTGGAGAGTTTAGgtgtgaaagatGTCCATGCTGATCATGCTGCCAGCCATATTGGTAAGGCCCAGGGGATCGTGATGTGCCTAAGAGCCACGCCCTACAACAGCAGCAGACGCAAAGTCTACCTACCTATGGACATCTGCATGCTGGCCAGATCATTCAGCAAGAACATACCAGCTTCTGCTTTCCCTGCCTTCCTCCAAACGGTGGTGCTGGAAGACTACCTTCAAAGGGTGCGGCGGGTAGACTTTGATGTGTTCCATCCCAGCCTACAGAAAAGAAACCCACTGATCCCCATCCAGCTCTATTTCCGCTCCTGGAAGAAGACCTATTGACCTGTATAGTGGGACCTTATCGTTTGCCCTATTGTAATTTATACCAGGTTTAAACATCCGGTTTCCCAAAGTCCCGCTCTCGTATGTTGGTTTCTAAGTAGACCTATCTACAACAGTGGATTTCAAGAGACTCCTCCATCTATGATGTCAGCACTCCCCAAAAAAAGGATTCTGATCTAAAACATGCCTCTGCCATCTAAACCAGTTCACCTGTGTTATTCCCTGTTGTAGACTAGACAGCTGAGGACCACAGACAGAGATTATTGTAAAGCAATAACTACAGTACTGGAGACTGAACTGATGCCCTGATATATTGAGTATTTTCAGTAATAAATCGTGTAGCCATGTTGGTCTGTGTTTTCTCTCCTTTTTAAAGCTTAAATAAAGATGTCACAACCATAA
>XM_036945545.1
GAAAACGTCCACTATAAATGACACGGAAATGCACAGTTGTAGCTGCTACATATTGTTCGCTAAATTAGCAAAGTTAACCAATAATTAACTAACTTGAGACAAATACTTTACCTAAAACGAGTGTTCTGTATTTAAAAATACAACAGAAAGCGGAACACAAATTAAATAGGGAGGAAGACTTTTGTTGCGACACAAGGTAAGGGTGAAAGTTGAAGGGTATGTTGTCAACATGGCATCTGGCATTAGTGCAAAGCATGGACTATTAACCACAAAATGTTCGGTATTTCACTCACTCCAAAGAAAGATATTGCCACACGCTATTTGCATTCAACGACCTACAGAAGTGAAATGTCTACGAGCTTCAACAAACTCGACTATAGAGTCGCAGCACAACGAAAAATACTGTATCGACATTGTGAGGTCTCGGGACTATGACGGTTTTGTGTCCTCCCTGCTTCTCCCTGAGGATGCGCGACGCTCCTCACTGGCCCTGAGGGCCTTCAATGTCGAGCTGGCTCAGGCAGGTGAAGGACTCTGTTTCCCAGAAGACTATAGGTCTGATGCGGATGCAGTTCTGGAAGACTACAGTGGAGGAGATCTACAGGGACGACCCCCCAGTGCAGCCTGTCAGTGCAGAACTATGGAGGGCGGTGAAGAAACACTACCTGACAAAGAGGTGGATGCTTAGGATAATCTCTGAGAGAGAGAAAGACATGGAAGACAGAGCTTATAGAAACCTCCAGGAGTTGGAGGCCTATTCAGACAATACCCAGTCCTCACTACTGTACCTTCTTCTGGAGAGTTTAGgtgtgaaagatGTCCATGCTGATCATGCTGCCAGCCATATTGGTAAGGCCCAGGGGATCGTGATGTGCCTAAGAGCCACGCCCTACAACAGCAGCAGACGCAAAGTCTACCTACCTATGGACATCTGCATGCTGCACAGAGCCTCCCAGGAGGACTTCATCCGAGGAAGCCGGGAACAGAATGTGAGGGATGTGGTATATGACATTGCCAGCCAAGCCCACGTACACCTACAACACGCCAGATCATTCAGCAAGAACATACCAGCTTCTGCTTTCCCTGCCTTCCTCCAAACGGTGGTGCTGGAAGACTACCTTCAAAGGGTGCGGCGGGTAGACTTTGATGTGTTCCATCCCAGCCTACAGAAAAGAAACCCACTGATCCCCATCCAGCTCTATTTCCGCTCCTGGAAGAAGACCTATTGACCTGTATAGTGGGACCTTATCGTTTGCCCTATTGTAATTTATACCAGGTTTAAACATCCGGTTTCCCAAAGTCCCGCTCTCGTATGTTGGTTTCTAAGTAGACCTATCTACAACAGTGGATTTCAAGAGACTCCTCCATCTATGATGTCAGCACTCCCCAAAAAAAGGATTCTGATCTAAAACATGCCTCTGCCATCTAAACCAGTTCACCTGTGTTATTCCCTGTTGTAGACTAGACAGCTGAGGACCACAGACAGAGATTATTGTAAAGCAATAACTACAGTACTGGAGACTGAACTGATGCCCTGATATATTGAGTATTTTCAGTAATAAATCGTGTAGCCATGTTGGTCTGTGTTTTCTCTCCTTTTTAAAGCTTAAATAAAGATGTCACAACCATAA

Function

NR:

description
NADH dehydrogenase (ubiquinone) complex I, assembly factor 6-like

GO: NA

KEGG:

id description
K18163 NDUFAF6; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558527.2 False 1627 mRNA 0.46 9 30798780 30807966
XM_036945539.1 False 1525 mRNA 0.45 8 30798780 30807966
XM_036945545.1 True 1631 mRNA 0.46 9 30798780 30807966

Neighbor

gene id symbol gene type direction distance location
si:dkey-22o22.2 LOC106605377 coding upstream 52629 30618003 ~ 30746151 (+)
LOC110486681 LOC106580557 coding upstream 256207 30532828 ~ 30542573 (+)
LOC110486625 LOC106605474 coding upstream 268434 30518443 ~ 30530346 (+)
LOC110534660 LOC106605472 coding upstream 293661 30485372 ~ 30505119 (+)
decr1 decr1 coding upstream 439085 30352768 ~ 30359695 (+)
plekhf2 plekhf2 coding downstream 13810 30821776 ~ 30844299 (+)
LOC110534679 LOC106605381 coding downstream 43331 30851297 ~ 30856046 (+)
LOC110534689 LOC106605368 coding downstream 65767 30873733 ~ 30891386 (+)
LOC110486784 NA coding downstream 328842 31136808 ~ 31146454 (+)
sri sorcn coding downstream 391369 31199335 ~ 31202392 (+)
G131502 NA non-coding upstream 36866 30747628 ~ 30761914 (+)
G131494 NA non-coding upstream 89059 30709496 ~ 30709721 (+)
G131493 NA non-coding upstream 89296 30708874 ~ 30709484 (+)
G131448 NA non-coding upstream 187860 30610691 ~ 30610920 (+)
G131424 NA non-coding upstream 203343 30595237 ~ 30595437 (+)
G131527 NA non-coding downstream 6540 30814506 ~ 30815333 (+)
G131540 NA non-coding downstream 52590 30860556 ~ 30861094 (+)
G131556 NA non-coding downstream 94838 30902804 ~ 30908231 (+)
G131719 NA non-coding downstream 248094 31056060 ~ 31056286 (+)
G131720 NA non-coding downstream 291234 31099200 ~ 31099445 (+)
G131517 ccne2 other upstream 48826 30748055 ~ 30749954 (+)
G131491 NA other upstream 98157 30700182 ~ 30700623 (+)
G130414 NA other upstream 1008949 29789576 ~ 29789831 (+)
LOC110486279 LOC106605442 other upstream 1104929 29685855 ~ 29697686 (+)
G130308 NA other upstream 1157684 29600026 ~ 29641096 (+)
LOC110534710 LOC106605356 other downstream 483504 31262054 ~ 31294577 (+)
eaf1 LOC106581241 other downstream 552470 31360408 ~ 31366322 (+)
G132342 LOC100136303 other downstream 1049682 31834170 ~ 31887572 (+)
G133473 LOC106605294 other downstream 2359472 33167438 ~ 33169378 (+)
G133663 LOC106605282 other downstream 2688488 33496454 ~ 33497285 (+)

Expression


Co-expression Network