LOC110534689 (LOC106605368)


Basic Information

Item Value
gene id LOC110534689
gene name LOC106605368
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30873733 ~ 30891386 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945585.1
AGTTCTGACATATAGCACACTGCTTGACTCATGATAAGATCAGTAACGTGCATTATTTTTCATTTGATTGTTATTAATATTAAAAGAACAAAGTTGTTTCTGTTGAGGAGTATGCTCAAAGGACCCCGGCCTGACTGTTTTCTGTGAGATGGAATTGTTCAGGACGACAATACTTCTGCCAGTTCTGGTCCTCTCTCAAGCCTTTCTAAATGAAGACCACTCTGTTCCGGGGAACTTCTCTGGGTCGAGAGAGACTGATGAGCAGCAGACATCCAATCTAAccaTATCTCACCCCCCCAGGCTATCTCAGCACTGCTCTGGGGTTGTCGAGGTGCTCCATCGAGGGCTGTGGAGGCCAGTGACCTTTGACCTTGGGTCTGCAGAGTGGGCCAAAGTGGTGGAGGACATATGCACCAACCTGAGCTGCGGGGCAGTGTACGAGCGCCGACAGAATGGCACAGCTACATTAAACTACTCCAGCTCAACGTGTCTGAGCCAGTGTGTCTACAGAGACCTACTGGTGGAGAACTGTACAGAGCTCTCATACACAGACTGCTCTAACCTGACTGAGATAACCTGTGGGCACCAGGCCGTGCGATTGGTTGGAGGCTCACACCACTGTGAAGGACGGGTGGAGTTGTGGAGAGAGGAAAAATGGGGAACGGTGTGTGACGATAGTTGGGACCTGAGAGATGGGGGCGTGGTCTGTGCCCAATTGGGCTGTGGCTCTGCCCTGAATGTGAGCGGGCAGGACGGGTCCTTTGAAGCGGGTGTTGGTCTGGTTCTCTTAGATGAGGTGAACTGTGGGGGGAGCGAGAGGAACCTATGGGAGTGTCCCTCCATGGGGACAGTCAACGACTGTGGACACAAAGAGGACGCTGCAGTGGTTTGTTCAGGAATTCCATCTCAACCAGGCAACGAGACGGCAGAACAGAACACCCAGACTTCAACCACAGCAGACTCAGTTCTACTAGTCACCAGTGCAGAGAGCCggtcctctcctccagcagctgCTGTCTGGGGCTGCATCGCATTGTCTATAGCCCTCCTCCTCACACTCCTCTCCAATGCTTCACTCTTCCTGTCTTACAGGAGGAGAGCTGCACTTCTGGTTCACCAAAGACAAGATGGCCGCCTGCTGTCCATCCAGTCTCAACACACTGACCGAGGGGAGAGAGTCAACCTCCTCACAGTCACCACAGACACAGCTGATTACACTCCACAGTACCTTTCCCAACAACCCACTCAGAATGACACCGATGCCTCATGTGACTCTGACTATGAAAACTATGACTTCAATGACCAACCCTCTGTTGCCATGGCTACTGCACTTGTCAGGGTCCTTGACAATGGAGTAGGCACAAGCAGAGAGCCATGGGAAACCACGCAGACAGCAGAGACTTCTGACGCTCCTGAGAAATATAATATTGTTGCTGAGACAATCAACGGCATTGAGAGAAAAAACCCTGCCACCCAAAGTCTGCATTCGCTGGTGTCATCCAGCACGTCTTCTGGGGAATGCTATGAGAACATTGAGACACTGGAGAAGGAGCTGCTGGACTCAGGTCCAGATTTGAGAGAAACTGCCCTCACAGACTTGATATGTGGAAGAGAGCCATCCTTGGGATCGAGTAGTAGTACAACATCAGGGGAATCCTACTACAACGTGGGGATGGCAGTGGAACAGCATCTACAGTCAGAGAACACCTATACACATTCCCCTGTGCAATCAACCAGTGCACACCAGGATCAGCAACAGCCTGTGAACAGCAACTGCCACCTACTGAGCAGTCAAAATCAAGAAGATTCAAGCAGCTCATCTTCCTCTGAGCTTTATGAGAACATAGAAGTCCAAGATGAAGAGGGGATTGGTGATGCTACTGTGAAAGAAGACCCGGACCAGTCTCTTTCTGACAGTGACTACGATGACATAACAAATTACTAGCATTTCATCAAACATAGCAGTGAAGTGAGAACTATAAAACAGAGTCATTTACATATTAGCAGTTGTTATTATCCAGAAAGACAAACAGGAGCAAT
>XM_036945587.1
AGTTCTGACATATAGCACACTGCTTGACTCATGATAAGATCAGTAACGTGCATTATTTTTCATTTGATTGTTATTAATATTAAAAGAACAAAGTTGTTTCTGTTGAGGAGTATGCTCAAAGGACCCCGGCCTGACTGTTTTCTGTGAGATGGAATTGTTCAGGACGACAATACTTCTGCCAGTTCTGGTCCTCTCTCAAGCCTTTCTAAATGAAGACCACTCTGTTCCGGGGAACTTCTCTGGGTCGAGAGAGACTGATGAGCAGCAGACATCCAATCTAAccaTATCTCACCCCCCCAGGCTATCTCAGCACTGCTCTGGGGTTGTCGAGGTGCTCCATCGAGGGCTGTGGAGGCCAGTGACCTTTGACCTTGGGTCTGCAGAGTGGGCCAAAGTGGTGGAGGACATATGCACCAACCTGAGCTGCGGGGCAGTGTACGAGCGCCGACAGAATGGCACAGCTACATTAAACTACTCCAGCTCAACGTGTCTGAGCCAGTGTGTCTACAGAGACCTACTGGTGGAGAACTGTACAGAGCTCTCATACACAGACTGCTCTAACCTGACTGAGATAACCTGTGGGCACCAGGCCGTGCGATTGGTTGGAGGCTCACACCACTGTGAAGGACGGGTGGAGTTGTGGAGAGAGGAAAAATGGGGAACGGTGTGTGACGATAGTTGGGACCTGAGAGATGGGGGCGTGGTCTGTGCCCAATTGGGCTGTGGCTCTGCCCTGAATGTGAGCGGGCAGGACGGGTCCTTTGAAGCGGGTGTTGGTCTGGTTCTCTTAGATGAGGTGAACTGTGGGGGGAGCGAGAGGAACCTATGGGAGTGTCCCTCCATGGGGACAGTCAACGACTGTGGACACAAAGAGGACGCTGCAGTGGTTTGTTCAGGAATTCCATCTCAACCAGGCAACGAGACGGCAGAACAGAACACCCAGACTTCAACCACAGACTCAGTTCTACTAGTCACCAGTGCAGAGAGCCggtcctctcctccagcagctgCTGTCTGGGGCTGCATCGCATTGTCTATAGCCCTCCTCCTCACACTCCTCTCCAATGCTTCACTCTTCCTGTCTTACAGGAGGAGAGCTGCACTTCTGGTTCACCAAAGACAAGATGGCCGCCTGCTGTCCATCCAGTCTCAACACACTGACCGAGGGGAGAGAGTCAACCTCCTCACAGTCACCACAGACACAGCTGATTACACTCCACAGTACCTTTCCCAACAACCCACTCAGAATGACACCGATGCCTCATGTGACTCTGACTATGAAAACTATGACTTCAATGACCAACCCTCTGTTGCCATGGCTACTGCACTTGTCAGGGTCCTTGACAATGGAGTAGGCACAAGCAGAGAGCCATGGGAAACCACGCAGACAGCAGAGACTTCTGACGCTCCTGAGAAATATAATATTGTTGCTGAGACAATCAACGGCATTGAGAGAAAAAACCCTGCCACCCAAAGTCTGCATTCGCTGGTGTCATCCAGCACGTCTTCTGGGGAATGCTATGAGAACATTGAGACACTGGAGAAGGAGCTGCTGGACTCAGGTCCAGATTTGAGAGAAACTGCCCTCACAGACTTGATATGTGGAAGAGAGCCATCCTTGGGATCGAGTAGTAGTACAACATCAGGGGAATCCTACTACAACGTGGGGATGGCAGTGGAACAGCATCTACAGTCAGAGAACACCTATACACATTCCCCTGTGCAATCAACCAGTGCACACCAGGATCAGCAACAGCCTGTGAACAGCAACTGCCACCTACTGAGCAGTCAAAATCAAGAAGATTCAAGCAGCTCATCTTCCTCTGAGCTTTATGAGAACATAGAAGTCCAAGATGAAGAGGGGATTGGTGATGCTACTGTGAAAGAAGACCCGGACCAGTCTCTTTCTGACAGTGACTACGATGACATAACAAATTACTAGCATTTCATCAAACATAGCAGTGAAGTGAGAACTATAAAACAGAGTCATTTACATATTAGCAGTTGTTATTATCCAGAAAGACAAACAGGAGCAAT

Function

NR:

description
T-cell differentiation antigen CD6-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945585.1 False 2040 mRNA 0.50 13 30873733 30891386
XM_036945587.1 True 2037 mRNA 0.50 13 30873733 30891386

Neighbor

gene id symbol gene type direction distance location
LOC110534679 LOC106605381 coding upstream 17687 30851297 ~ 30856046 (+)
plekhf2 plekhf2 coding upstream 29434 30821776 ~ 30844299 (+)
LOC110486724 LOC106581338 coding upstream 65767 30798780 ~ 30807966 (+)
si:dkey-22o22.2 LOC106605377 coding upstream 127582 30618003 ~ 30746151 (+)
LOC110486681 LOC106580557 coding upstream 331160 30532828 ~ 30542573 (+)
LOC110486784 NA coding downstream 245422 31136808 ~ 31146454 (+)
sri sorcn coding downstream 307949 31199335 ~ 31202392 (+)
LOC110486889 NA coding downstream 317599 31208985 ~ 31222079 (+)
mxtx2 NA coding downstream 365131 31255824 ~ 31261130 (+)
LOC110534710 LOC106605356 coding downstream 370668 31262054 ~ 31294577 (+)
G131540 NA non-coding upstream 12639 30860556 ~ 30861094 (+)
G131527 NA non-coding upstream 58400 30814506 ~ 30815333 (+)
G131502 NA non-coding upstream 111819 30747628 ~ 30761914 (+)
G131494 NA non-coding upstream 164012 30709496 ~ 30709721 (+)
G131493 NA non-coding upstream 164249 30708874 ~ 30709484 (+)
G131556 NA non-coding downstream 11418 30902804 ~ 30908231 (+)
G131719 NA non-coding downstream 164674 31056060 ~ 31056286 (+)
G131720 NA non-coding downstream 207814 31099200 ~ 31099445 (+)
G131721 NA non-coding downstream 209362 31100748 ~ 31100965 (+)
G131731 LOC100136479 non-coding downstream 215455 31106841 ~ 31175978 (+)
G131517 ccne2 other upstream 123779 30748055 ~ 30749954 (+)
G131491 NA other upstream 173110 30700182 ~ 30700623 (+)
G130414 NA other upstream 1083902 29789576 ~ 29789831 (+)
LOC110486279 LOC106605442 other upstream 1179882 29685855 ~ 29697686 (+)
G130308 NA other upstream 1232637 29600026 ~ 29641096 (+)
eaf1 LOC106581241 other downstream 469050 31360408 ~ 31366322 (+)
G132342 LOC100136303 other downstream 966262 31834170 ~ 31887572 (+)
G133473 LOC106605294 other downstream 2276052 33167438 ~ 33169378 (+)
G133663 LOC106605282 other downstream 2605068 33496454 ~ 33497285 (+)

Expression


Co-expression Network